Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS04975

Experiment: Acanthamoeba sp., muxed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Acanthamoeba sp., muxed culture-1
1,043,753	+		ABZR87_RS04970	0.58	+0.4
1,043,753	+		ABZR87_RS04970	0.58	-0.7
1,043,753	+		ABZR87_RS04970	0.58	-0.8
1,043,753	+		ABZR87_RS04970	0.58	-0.3
1,043,754	-		ABZR87_RS04970	0.58	+0.1
1,043,754	-		ABZR87_RS04970	0.58	-0.8
1,043,754	-		ABZR87_RS04970	0.58	-0.8
1,043,754	-		ABZR87_RS04970	0.58	-0.9
1,043,754	-		ABZR87_RS04970	0.58	-0.5
1,043,754	-		ABZR87_RS04970	0.58	+0.1
1,043,754	-		ABZR87_RS04970	0.58	-0.1
1,043,754	-		ABZR87_RS04970	0.58	-0.6
1,043,957	+		ABZR87_RS04970	0.68	-1.2
1,043,958	-		ABZR87_RS04970	0.68	-0.6
1,043,958	-		ABZR87_RS04970	0.68	-1.0
1,044,065	+		ABZR87_RS04970	0.73	+0.1
1,044,066	-		ABZR87_RS04970	0.73	-0.8
1,044,066	-		ABZR87_RS04970	0.73	+0.8
1,044,066	-		ABZR87_RS04970	0.73	+0.4
1,044,066	-		ABZR87_RS04970	0.73	+0.4
1,044,067	-		ABZR87_RS04970	0.73	-0.1
1,044,256	+		ABZR87_RS04970	0.83	-0.5
1,044,257	-		ABZR87_RS04970	0.83	-0.2
1,044,258	-		ABZR87_RS04970	0.83	-1.5
1,044,314	+		ABZR87_RS04970	0.85	+0.1
1,044,314	+		ABZR87_RS04970	0.85	-3.1
1,044,314	+		ABZR87_RS04970	0.85	-1.8
1,044,314	+		ABZR87_RS04970	0.85	-0.8
1,044,314	+		ABZR87_RS04970	0.85	+0.7
1,044,315	-		ABZR87_RS04970	0.85	-1.9
1,044,315	-		ABZR87_RS04970	0.85	-0.2
1,044,315	-		ABZR87_RS04970	0.85	-1.2
1,044,408	-				-0.1
1,044,410	+				-0.5
1,044,410	+				-0.1
1,044,410	+				-0.2
1,044,410	+				-2.2
1,044,410	+				+1.1
1,044,410	+				-0.2
1,044,411	-				+2.2
1,044,411	-				+0.2
1,044,461	+				-1.7
1,044,461	+				-0.0
1,044,461	+				+0.7
1,044,462	-				-0.7
1,044,462	-				+0.6
1,044,532	+				-0.1
1,044,532	+				-0.9
1,044,532	+				-0.0
1,044,533	-				-0.7
1,044,533	-				+0.4
1,044,533	-				-0.7
1,044,533	-				-0.2
1,044,533	-				+0.6
1,044,533	-				+0.1
1,044,696	+		ABZR87_RS04975	0.15	-1.4
1,044,696	+		ABZR87_RS04975	0.15	-0.2
1,044,696	+		ABZR87_RS04975	0.15	+0.1
1,044,697	-		ABZR87_RS04975	0.15	-3.3
1,044,697	-		ABZR87_RS04975	0.15	+0.4
1,044,697	-		ABZR87_RS04975	0.15	-3.4
1,044,697	-		ABZR87_RS04975	0.15	-1.4
1,045,245	-				+1.6
1,045,245	-				+1.9
1,045,275	+				-0.1
1,045,304	+				-0.9
1,045,304	+				-0.0
1,045,304	+				-0.9
1,045,304	+				-1.7
1,045,304	+				-0.2
1,045,305	-				-1.2
1,045,305	-				-0.8
1,045,360	+				-1.5
1,045,360	+				-0.4
1,045,360	+				-2.1
1,045,361	-				-0.8
1,045,361	-				+0.8
1,045,361	-				+0.2
1,045,365	+				+0.1
1,045,365	+				-0.9
1,045,365	+				+0.9
1,045,365	+				+1.2
1,045,365	+				-1.1
1,045,365	+				-1.4
1,045,366	-				-0.5
1,045,366	-				-0.2
1,045,366	-				+0.3
1,045,366	-				-0.6
1,045,366	-				-0.3
1,045,378	+				-1.6
1,045,379	-				+0.8
1,045,379	-				-0.5
1,045,436	+				+0.7
1,045,437	-				-0.6
1,045,598	+		ABZR87_RS04980	0.18	+0.6
1,045,598	+		ABZR87_RS04980	0.18	-1.2
1,045,598	+		ABZR87_RS04980	0.18	-0.3
1,045,598	+		ABZR87_RS04980	0.18	-0.2
1,045,598	+		ABZR87_RS04980	0.18	+0.0
1,045,598	+		ABZR87_RS04980	0.18	-0.6
1,045,598	+		ABZR87_RS04980	0.18	+0.2
1,045,598	+		ABZR87_RS04980	0.18	+0.3
1,045,643	+		ABZR87_RS04980	0.21	+0.9
1,045,643	+		ABZR87_RS04980	0.21	+0.1
1,045,643	+		ABZR87_RS04980	0.21	+0.2
1,045,643	+		ABZR87_RS04980	0.21	+0.4
1,045,643	+		ABZR87_RS04980	0.21	-0.3
1,045,643	+		ABZR87_RS04980	0.21	-0.7
1,045,644	-		ABZR87_RS04980	0.22	-0.6
1,045,644	-		ABZR87_RS04980	0.22	+0.2
1,045,644	-		ABZR87_RS04980	0.22	-0.9
1,045,658	+		ABZR87_RS04980	0.23	-1.7
1,045,718	+		ABZR87_RS04980	0.28	-0.6
1,045,718	+		ABZR87_RS04980	0.28	+0.6
1,045,718	+		ABZR87_RS04980	0.28	+0.3
1,045,718	+		ABZR87_RS04980	0.28	+0.6
1,045,719	-		ABZR87_RS04980	0.28	-1.2
1,045,721	-		ABZR87_RS04980	0.28	+1.8
1,045,736	+		ABZR87_RS04980	0.29	+0.3
1,045,736	+		ABZR87_RS04980	0.29	-0.2
1,045,737	-		ABZR87_RS04980	0.29	-0.2
1,045,820	-		ABZR87_RS04980	0.36	+0.4
1,045,965	-		ABZR87_RS04980	0.49	-0.7
1,045,965	-		ABZR87_RS04980	0.49	+0.0
1,045,965	-		ABZR87_RS04980	0.49	+1.3
1,045,988	+		ABZR87_RS04980	0.51	+1.0
1,045,988	+		ABZR87_RS04980	0.51	-0.3
1,046,045	+		ABZR87_RS04980	0.55	+1.0
1,046,046	-		ABZR87_RS04980	0.55	-0.8
1,046,046	-		ABZR87_RS04980	0.55	-0.7