Experiment: Acanthamoeba sp., muxed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS02840 and ABZR87_RS02845 are separated by 284 nucleotides ABZR87_RS02845 and ABZR87_RS02850 are separated by 107 nucleotides ABZR87_RS02850 and ABZR87_RS02855 are separated by 83 nucleotides
ABZR87_RS02840: ABZR87_RS02840 - 50S ribosomal protein L3, at 588,781 to 589,434
_RS02840
ABZR87_RS02845: ABZR87_RS02845 - 30S ribosomal protein S10, at 589,719 to 590,030
_RS02845
ABZR87_RS02850: ABZR87_RS02850 - elongation factor Tu, at 590,138 to 591,346
_RS02850
ABZR87_RS02855: ABZR87_RS02855 - elongation factor G, at 591,430 to 593,556
_RS02855
Position (kb) 590
591
592 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 589.648 kb on + strand at 589.648 kb on + strand at 589.649 kb on - strand at 589.720 kb on + strand at 589.721 kb on - strand at 589.744 kb on - strand at 590.088 kb on - strand at 590.140 kb on - strand at 590.344 kb on - strand, within ABZR87_RS02850 at 590.344 kb on - strand, within ABZR87_RS02850 at 590.344 kb on - strand, within ABZR87_RS02850 at 590.495 kb on - strand, within ABZR87_RS02850 at 590.959 kb on - strand, within ABZR87_RS02850 at 590.959 kb on - strand, within ABZR87_RS02850 at 590.959 kb on - strand, within ABZR87_RS02850 at 590.959 kb on - strand, within ABZR87_RS02850 at 590.959 kb on - strand, within ABZR87_RS02850 at 591.373 kb on - strand at 591.380 kb on - strand at 591.432 kb on - strand at 591.432 kb on - strand at 591.432 kb on - strand at 591.439 kb on - strand at 591.439 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Acanthamoeba sp., muxed culture-1 remove 589,648 + -0.8 589,648 + -1.3 589,649 - +0.2 589,720 + -0.5 589,721 - -2.7 589,744 - +0.1 590,088 - -0.5 590,140 - -3.6 590,344 - ABZR87_RS02850 0.17 -0.8 590,344 - ABZR87_RS02850 0.17 -0.5 590,344 - ABZR87_RS02850 0.17 +0.1 590,495 - ABZR87_RS02850 0.30 +0.7 590,959 - ABZR87_RS02850 0.68 -0.1 590,959 - ABZR87_RS02850 0.68 -1.5 590,959 - ABZR87_RS02850 0.68 +1.7 590,959 - ABZR87_RS02850 0.68 -2.1 590,959 - ABZR87_RS02850 0.68 -1.3 591,373 - -0.6 591,380 - -1.5 591,432 - -1.0 591,432 - +0.5 591,432 - -0.9 591,439 - +0.2 591,439 - +0.6
Or see this region's nucleotide sequence