Experiment: Acanthamoeba sp., muxed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS01480 and ABZR87_RS01485 are separated by 132 nucleotides ABZR87_RS01485 and ABZR87_RS01490 are separated by 173 nucleotides
ABZR87_RS01480: ABZR87_RS01480 - arabinose ABC transporter substrate-binding protein, at 311,370 to 312,317
_RS01480
ABZR87_RS01485: ABZR87_RS01485 - 2-dehydro-3-deoxygalactonokinase, at 312,450 to 313,463
_RS01485
ABZR87_RS01490: ABZR87_RS01490 - porin, at 313,637 to 314,713
_RS01490
Position (kb) 312
313
314 Strain fitness (log2 ratio) -2
-1
0
1 at 311.476 kb on + strand, within ABZR87_RS01480 at 311.476 kb on + strand, within ABZR87_RS01480 at 311.476 kb on + strand, within ABZR87_RS01480 at 311.476 kb on + strand, within ABZR87_RS01480 at 311.476 kb on + strand, within ABZR87_RS01480 at 311.476 kb on + strand, within ABZR87_RS01480 at 311.476 kb on + strand, within ABZR87_RS01480 at 311.477 kb on - strand, within ABZR87_RS01480 at 311.477 kb on - strand, within ABZR87_RS01480 at 311.556 kb on - strand, within ABZR87_RS01480 at 311.857 kb on + strand, within ABZR87_RS01480 at 311.857 kb on + strand, within ABZR87_RS01480 at 311.858 kb on - strand, within ABZR87_RS01480 at 312.452 kb on - strand at 312.733 kb on + strand, within ABZR87_RS01485 at 312.733 kb on + strand, within ABZR87_RS01485 at 312.733 kb on + strand, within ABZR87_RS01485 at 312.734 kb on - strand, within ABZR87_RS01485 at 312.734 kb on - strand, within ABZR87_RS01485 at 312.734 kb on - strand, within ABZR87_RS01485 at 312.734 kb on - strand, within ABZR87_RS01485 at 313.437 kb on - strand at 313.505 kb on - strand at 313.639 kb on - strand at 313.661 kb on - strand at 313.663 kb on - strand at 313.663 kb on - strand at 313.663 kb on - strand at 313.663 kb on - strand at 313.762 kb on - strand, within ABZR87_RS01490 at 313.965 kb on - strand, within ABZR87_RS01490
Per-strain Table
Position Strand Gene LocusTag Fraction Acanthamoeba sp., muxed culture-1 remove 311,476 + ABZR87_RS01480 0.11 +0.9 311,476 + ABZR87_RS01480 0.11 -0.0 311,476 + ABZR87_RS01480 0.11 +0.3 311,476 + ABZR87_RS01480 0.11 -0.4 311,476 + ABZR87_RS01480 0.11 +0.2 311,476 + ABZR87_RS01480 0.11 -0.6 311,476 + ABZR87_RS01480 0.11 +0.3 311,477 - ABZR87_RS01480 0.11 -0.5 311,477 - ABZR87_RS01480 0.11 +0.2 311,556 - ABZR87_RS01480 0.20 +0.4 311,857 + ABZR87_RS01480 0.51 -0.0 311,857 + ABZR87_RS01480 0.51 +0.3 311,858 - ABZR87_RS01480 0.51 +0.3 312,452 - -0.1 312,733 + ABZR87_RS01485 0.28 -1.5 312,733 + ABZR87_RS01485 0.28 -0.3 312,733 + ABZR87_RS01485 0.28 -0.3 312,734 - ABZR87_RS01485 0.28 -0.7 312,734 - ABZR87_RS01485 0.28 -0.4 312,734 - ABZR87_RS01485 0.28 -0.8 312,734 - ABZR87_RS01485 0.28 -1.9 313,437 - -1.5 313,505 - +0.8 313,639 - -1.2 313,661 - +0.3 313,663 - -0.7 313,663 - +0.8 313,663 - +0.2 313,663 - +0.5 313,762 - ABZR87_RS01490 0.12 -1.0 313,965 - ABZR87_RS01490 0.30 -0.3
Or see this region's nucleotide sequence