Experiment: C.elegans, mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS17400 and ABZR87_RS17405 are separated by 19 nucleotides ABZR87_RS17405 and ABZR87_RS17410 are separated by 78 nucleotides
ABZR87_RS17400: ABZR87_RS17400 - amidohydrolase family protein, at 262,109 to 263,497
_RS17400
ABZR87_RS17405: ABZR87_RS17405 - nucleobase:cation symporter-2 family protein, at 263,517 to 264,860
_RS17405
ABZR87_RS17410: ABZR87_RS17410 - GTP-binding protein, at 264,939 to 266,069
_RS17410
Position (kb) 263
264
265 Strain fitness (log2 ratio) -2
-1
0
1 at 262.726 kb on - strand, within ABZR87_RS17400 at 262.726 kb on - strand, within ABZR87_RS17400 at 262.749 kb on + strand, within ABZR87_RS17400 at 262.749 kb on + strand, within ABZR87_RS17400 at 262.749 kb on + strand, within ABZR87_RS17400 at 262.749 kb on + strand, within ABZR87_RS17400 at 262.749 kb on + strand, within ABZR87_RS17400 at 262.749 kb on + strand, within ABZR87_RS17400 at 262.750 kb on - strand, within ABZR87_RS17400 at 262.750 kb on - strand, within ABZR87_RS17400 at 262.750 kb on - strand, within ABZR87_RS17400 at 262.774 kb on + strand, within ABZR87_RS17400 at 262.775 kb on - strand, within ABZR87_RS17400 at 262.775 kb on - strand, within ABZR87_RS17400 at 262.903 kb on - strand, within ABZR87_RS17400 at 263.094 kb on + strand, within ABZR87_RS17400 at 263.095 kb on - strand, within ABZR87_RS17400 at 263.101 kb on - strand, within ABZR87_RS17400 at 263.534 kb on + strand at 263.731 kb on + strand, within ABZR87_RS17405 at 263.732 kb on - strand, within ABZR87_RS17405 at 263.747 kb on - strand, within ABZR87_RS17405 at 263.747 kb on - strand, within ABZR87_RS17405 at 264.555 kb on + strand, within ABZR87_RS17405 at 264.775 kb on + strand at 264.775 kb on + strand at 264.788 kb on + strand at 264.788 kb on + strand at 264.788 kb on + strand at 264.788 kb on + strand at 264.846 kb on + strand at 264.847 kb on - strand at 264.871 kb on + strand at 264.871 kb on + strand at 264.872 kb on - strand at 265.447 kb on + strand, within ABZR87_RS17410 at 265.448 kb on - strand, within ABZR87_RS17410 at 265.550 kb on + strand, within ABZR87_RS17410 at 265.852 kb on + strand, within ABZR87_RS17410 at 265.852 kb on + strand, within ABZR87_RS17410 at 265.853 kb on - strand, within ABZR87_RS17410
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-2 remove 262,726 - ABZR87_RS17400 0.44 -0.1 262,726 - ABZR87_RS17400 0.44 +0.0 262,749 + ABZR87_RS17400 0.46 -0.7 262,749 + ABZR87_RS17400 0.46 +0.7 262,749 + ABZR87_RS17400 0.46 +0.0 262,749 + ABZR87_RS17400 0.46 +0.3 262,749 + ABZR87_RS17400 0.46 +1.0 262,749 + ABZR87_RS17400 0.46 +0.1 262,750 - ABZR87_RS17400 0.46 +0.9 262,750 - ABZR87_RS17400 0.46 -0.4 262,750 - ABZR87_RS17400 0.46 +0.3 262,774 + ABZR87_RS17400 0.48 +0.2 262,775 - ABZR87_RS17400 0.48 +0.8 262,775 - ABZR87_RS17400 0.48 -0.8 262,903 - ABZR87_RS17400 0.57 -0.6 263,094 + ABZR87_RS17400 0.71 -0.9 263,095 - ABZR87_RS17400 0.71 -0.1 263,101 - ABZR87_RS17400 0.71 -0.0 263,534 + -0.2 263,731 + ABZR87_RS17405 0.16 -2.2 263,732 - ABZR87_RS17405 0.16 -0.4 263,747 - ABZR87_RS17405 0.17 +0.0 263,747 - ABZR87_RS17405 0.17 -0.3 264,555 + ABZR87_RS17405 0.77 -0.9 264,775 + -0.6 264,775 + -0.0 264,788 + -0.6 264,788 + +0.1 264,788 + +1.6 264,788 + +0.2 264,846 + -1.0 264,847 - +1.0 264,871 + +0.3 264,871 + +0.4 264,872 - +0.5 265,447 + ABZR87_RS17410 0.45 -1.3 265,448 - ABZR87_RS17410 0.45 -0.3 265,550 + ABZR87_RS17410 0.54 -0.1 265,852 + ABZR87_RS17410 0.81 -0.1 265,852 + ABZR87_RS17410 0.81 -0.0 265,853 - ABZR87_RS17410 0.81 +0.1
Or see this region's nucleotide sequence