Experiment: Dictyostellum sp.mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS17375 and ABZR87_RS17380 are separated by 289 nucleotides ABZR87_RS17380 and ABZR87_RS17385 are separated by 53 nucleotides
ABZR87_RS17375: ABZR87_RS17375 - ABC transporter ATP-binding protein, at 252,490 to 254,796
_RS17375
ABZR87_RS17380: ABZR87_RS17380 - cyanophycin synthetase, at 255,086 to 257,746
_RS17380
ABZR87_RS17385: ABZR87_RS17385 - cyanophycin synthetase, at 257,800 to 260,367
_RS17385
Position (kb) 255
256
257
258 Strain fitness (log2 ratio) -2
-1
0
1
2 at 254.105 kb on + strand, within ABZR87_RS17375 at 254.105 kb on + strand, within ABZR87_RS17375 at 254.123 kb on + strand, within ABZR87_RS17375 at 254.124 kb on - strand, within ABZR87_RS17375 at 254.187 kb on - strand, within ABZR87_RS17375 at 254.534 kb on - strand, within ABZR87_RS17375 at 254.534 kb on - strand, within ABZR87_RS17375 at 254.634 kb on + strand at 254.635 kb on - strand at 254.656 kb on - strand at 254.869 kb on + strand at 254.869 kb on + strand at 254.869 kb on + strand at 254.869 kb on + strand at 254.870 kb on - strand at 254.870 kb on - strand at 254.870 kb on - strand at 254.870 kb on - strand at 254.870 kb on - strand at 254.928 kb on + strand at 254.928 kb on + strand at 254.928 kb on + strand at 254.928 kb on + strand at 254.928 kb on + strand at 254.929 kb on - strand at 254.929 kb on - strand at 254.929 kb on - strand at 254.930 kb on + strand at 254.930 kb on + strand at 254.930 kb on + strand at 254.930 kb on + strand at 254.930 kb on + strand at 254.930 kb on + strand at 254.931 kb on - strand at 254.931 kb on - strand at 254.931 kb on - strand at 254.931 kb on - strand at 254.931 kb on - strand at 254.931 kb on - strand at 254.931 kb on - strand at 254.931 kb on - strand at 254.931 kb on - strand at 254.934 kb on + strand at 254.934 kb on + strand at 254.934 kb on + strand at 254.935 kb on - strand at 254.935 kb on - strand at 254.935 kb on - strand at 254.935 kb on - strand at 255.008 kb on + strand at 255.008 kb on + strand at 255.008 kb on + strand at 255.008 kb on + strand at 255.009 kb on - strand at 255.009 kb on - strand at 255.014 kb on + strand at 255.014 kb on + strand at 255.056 kb on + strand at 255.057 kb on - strand at 255.057 kb on - strand at 255.084 kb on - strand at 255.139 kb on + strand at 255.139 kb on + strand at 255.140 kb on - strand at 255.140 kb on - strand at 255.149 kb on + strand at 255.149 kb on + strand at 255.149 kb on + strand at 255.149 kb on + strand at 255.150 kb on - strand at 255.150 kb on - strand at 255.150 kb on - strand at 255.224 kb on + strand at 255.224 kb on + strand at 255.224 kb on + strand at 255.224 kb on + strand at 255.225 kb on - strand at 255.225 kb on - strand at 255.225 kb on - strand at 255.225 kb on - strand at 255.225 kb on - strand at 255.225 kb on - strand at 255.225 kb on - strand at 255.422 kb on + strand, within ABZR87_RS17380 at 255.422 kb on + strand, within ABZR87_RS17380 at 255.422 kb on + strand, within ABZR87_RS17380 at 255.422 kb on + strand, within ABZR87_RS17380 at 255.423 kb on - strand, within ABZR87_RS17380 at 255.423 kb on - strand, within ABZR87_RS17380 at 255.518 kb on + strand, within ABZR87_RS17380 at 255.519 kb on - strand, within ABZR87_RS17380 at 255.869 kb on + strand, within ABZR87_RS17380 at 255.935 kb on + strand, within ABZR87_RS17380 at 256.203 kb on - strand, within ABZR87_RS17380 at 256.656 kb on - strand, within ABZR87_RS17380 at 256.800 kb on - strand, within ABZR87_RS17380 at 256.862 kb on + strand, within ABZR87_RS17380 at 256.863 kb on - strand, within ABZR87_RS17380 at 256.863 kb on - strand, within ABZR87_RS17380 at 256.886 kb on + strand, within ABZR87_RS17380 at 256.886 kb on + strand, within ABZR87_RS17380 at 256.886 kb on + strand, within ABZR87_RS17380 at 256.886 kb on + strand, within ABZR87_RS17380 at 256.886 kb on + strand, within ABZR87_RS17380 at 256.886 kb on + strand, within ABZR87_RS17380 at 256.886 kb on + strand, within ABZR87_RS17380 at 256.887 kb on - strand, within ABZR87_RS17380 at 256.887 kb on - strand, within ABZR87_RS17380 at 256.887 kb on - strand, within ABZR87_RS17380 at 256.887 kb on - strand, within ABZR87_RS17380 at 256.887 kb on - strand, within ABZR87_RS17380 at 256.887 kb on - strand, within ABZR87_RS17380 at 256.888 kb on + strand, within ABZR87_RS17380 at 256.889 kb on - strand, within ABZR87_RS17380 at 256.889 kb on - strand, within ABZR87_RS17380 at 257.032 kb on + strand, within ABZR87_RS17380 at 257.032 kb on + strand, within ABZR87_RS17380 at 257.147 kb on + strand, within ABZR87_RS17380 at 257.147 kb on + strand, within ABZR87_RS17380 at 257.147 kb on + strand, within ABZR87_RS17380 at 257.403 kb on + strand, within ABZR87_RS17380 at 257.403 kb on + strand, within ABZR87_RS17380 at 257.403 kb on + strand, within ABZR87_RS17380 at 257.404 kb on - strand, within ABZR87_RS17380 at 257.404 kb on - strand, within ABZR87_RS17380 at 257.487 kb on + strand at 257.710 kb on - strand at 257.710 kb on - strand at 257.795 kb on - strand at 257.854 kb on - strand at 258.091 kb on + strand, within ABZR87_RS17385 at 258.091 kb on + strand, within ABZR87_RS17385 at 258.092 kb on - strand, within ABZR87_RS17385 at 258.109 kb on + strand, within ABZR87_RS17385 at 258.109 kb on + strand, within ABZR87_RS17385 at 258.109 kb on + strand, within ABZR87_RS17385 at 258.110 kb on - strand, within ABZR87_RS17385 at 258.604 kb on + strand, within ABZR87_RS17385 at 258.605 kb on - strand, within ABZR87_RS17385 at 258.605 kb on - strand, within ABZR87_RS17385 at 258.605 kb on - strand, within ABZR87_RS17385 at 258.605 kb on - strand, within ABZR87_RS17385 at 258.605 kb on - strand, within ABZR87_RS17385 at 258.649 kb on + strand, within ABZR87_RS17385 at 258.649 kb on + strand, within ABZR87_RS17385 at 258.649 kb on + strand, within ABZR87_RS17385 at 258.650 kb on - strand, within ABZR87_RS17385
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-2 remove 254,105 + ABZR87_RS17375 0.70 -0.6 254,105 + ABZR87_RS17375 0.70 +1.0 254,123 + ABZR87_RS17375 0.71 -1.0 254,124 - ABZR87_RS17375 0.71 -0.6 254,187 - ABZR87_RS17375 0.74 -2.1 254,534 - ABZR87_RS17375 0.89 -0.3 254,534 - ABZR87_RS17375 0.89 -1.0 254,634 + -0.5 254,635 - -1.5 254,656 - -0.1 254,869 + -1.2 254,869 + -0.3 254,869 + +0.1 254,869 + -0.7 254,870 - -1.3 254,870 - -1.4 254,870 - -1.0 254,870 - -1.4 254,870 - -1.5 254,928 + +0.0 254,928 + +0.1 254,928 + -0.1 254,928 + +0.3 254,928 + -0.3 254,929 - -0.7 254,929 - -0.1 254,929 - +0.5 254,930 + -0.2 254,930 + +0.8 254,930 + +1.0 254,930 + +0.7 254,930 + +0.3 254,930 + -0.1 254,931 - +1.2 254,931 - -0.8 254,931 - -1.7 254,931 - -0.2 254,931 - -0.3 254,931 - +0.0 254,931 - +0.2 254,931 - +0.5 254,931 - -0.8 254,934 + +0.6 254,934 + -0.2 254,934 + -2.1 254,935 - -0.4 254,935 - -0.5 254,935 - +0.3 254,935 - -0.0 255,008 + +1.7 255,008 + +0.7 255,008 + -2.1 255,008 + -0.1 255,009 - -1.4 255,009 - -2.0 255,014 + +0.8 255,014 + +0.7 255,056 + +0.0 255,057 - -0.4 255,057 - -0.6 255,084 - -0.6 255,139 + +0.1 255,139 + -0.2 255,140 - -1.0 255,140 - -1.1 255,149 + +0.4 255,149 + -1.1 255,149 + +0.8 255,149 + +0.7 255,150 - +2.7 255,150 - -1.0 255,150 - -1.7 255,224 + +0.3 255,224 + -1.0 255,224 + -1.4 255,224 + -0.6 255,225 - -0.3 255,225 - +1.2 255,225 - -0.4 255,225 - -0.6 255,225 - +0.3 255,225 - -1.8 255,225 - +0.5 255,422 + ABZR87_RS17380 0.13 +0.8 255,422 + ABZR87_RS17380 0.13 -0.4 255,422 + ABZR87_RS17380 0.13 +0.3 255,422 + ABZR87_RS17380 0.13 -0.8 255,423 - ABZR87_RS17380 0.13 -1.6 255,423 - ABZR87_RS17380 0.13 -2.2 255,518 + ABZR87_RS17380 0.16 -1.4 255,519 - ABZR87_RS17380 0.16 -0.8 255,869 + ABZR87_RS17380 0.29 -1.9 255,935 + ABZR87_RS17380 0.32 -0.2 256,203 - ABZR87_RS17380 0.42 -0.1 256,656 - ABZR87_RS17380 0.59 -1.2 256,800 - ABZR87_RS17380 0.64 -0.9 256,862 + ABZR87_RS17380 0.67 -0.7 256,863 - ABZR87_RS17380 0.67 -0.1 256,863 - ABZR87_RS17380 0.67 -0.4 256,886 + ABZR87_RS17380 0.68 +0.7 256,886 + ABZR87_RS17380 0.68 -1.2 256,886 + ABZR87_RS17380 0.68 -0.6 256,886 + ABZR87_RS17380 0.68 +0.8 256,886 + ABZR87_RS17380 0.68 +0.3 256,886 + ABZR87_RS17380 0.68 -0.9 256,886 + ABZR87_RS17380 0.68 -1.9 256,887 - ABZR87_RS17380 0.68 +0.9 256,887 - ABZR87_RS17380 0.68 -1.6 256,887 - ABZR87_RS17380 0.68 -0.5 256,887 - ABZR87_RS17380 0.68 -0.8 256,887 - ABZR87_RS17380 0.68 -2.1 256,887 - ABZR87_RS17380 0.68 -0.2 256,888 + ABZR87_RS17380 0.68 +0.2 256,889 - ABZR87_RS17380 0.68 +0.1 256,889 - ABZR87_RS17380 0.68 +0.3 257,032 + ABZR87_RS17380 0.73 -0.6 257,032 + ABZR87_RS17380 0.73 +0.1 257,147 + ABZR87_RS17380 0.77 -0.9 257,147 + ABZR87_RS17380 0.77 -0.5 257,147 + ABZR87_RS17380 0.77 -0.5 257,403 + ABZR87_RS17380 0.87 -0.2 257,403 + ABZR87_RS17380 0.87 -1.0 257,403 + ABZR87_RS17380 0.87 +0.0 257,404 - ABZR87_RS17380 0.87 +0.2 257,404 - ABZR87_RS17380 0.87 -0.1 257,487 + +0.9 257,710 - +0.5 257,710 - -0.2 257,795 - -1.0 257,854 - -1.0 258,091 + ABZR87_RS17385 0.11 -1.8 258,091 + ABZR87_RS17385 0.11 +0.2 258,092 - ABZR87_RS17385 0.11 +0.1 258,109 + ABZR87_RS17385 0.12 -1.5 258,109 + ABZR87_RS17385 0.12 -0.8 258,109 + ABZR87_RS17385 0.12 -0.1 258,110 - ABZR87_RS17385 0.12 -0.8 258,604 + ABZR87_RS17385 0.31 -1.5 258,605 - ABZR87_RS17385 0.31 -1.5 258,605 - ABZR87_RS17385 0.31 +0.4 258,605 - ABZR87_RS17385 0.31 +1.5 258,605 - ABZR87_RS17385 0.31 -0.8 258,605 - ABZR87_RS17385 0.31 -0.4 258,649 + ABZR87_RS17385 0.33 -0.6 258,649 + ABZR87_RS17385 0.33 -0.1 258,649 + ABZR87_RS17385 0.33 -1.0 258,650 - ABZR87_RS17385 0.33 -1.2
Or see this region's nucleotide sequence