Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS05585

Experiment: Dictyostellum sp.mixed culture-2

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABZR87_RS05580 and ABZR87_RS05585 are separated by 46 nucleotidesABZR87_RS05585 and ABZR87_RS05590 are separated by 600 nucleotides ABZR87_RS05580: ABZR87_RS05580 - diaminopimelate epimerase, at 1,186,158 to 1,187,039 _RS05580 ABZR87_RS05585: ABZR87_RS05585 - polyphosphate kinase 2 family protein, at 1,187,086 to 1,187,913 _RS05585 ABZR87_RS05590: ABZR87_RS05590 - orotate phosphoribosyltransferase, at 1,188,514 to 1,189,191 _RS05590 Position (kb) 1187 1188Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1186.109 kb on + strandat 1186.109 kb on + strandat 1186.109 kb on + strandat 1186.109 kb on + strandat 1186.109 kb on + strandat 1186.109 kb on + strandat 1186.110 kb on - strandat 1186.332 kb on + strand, within ABZR87_RS05580at 1186.683 kb on - strand, within ABZR87_RS05580at 1186.803 kb on + strand, within ABZR87_RS05580at 1186.804 kb on - strand, within ABZR87_RS05580at 1187.082 kb on + strandat 1187.083 kb on - strandat 1187.083 kb on - strandat 1187.083 kb on - strandat 1187.083 kb on - strandat 1187.083 kb on - strandat 1187.119 kb on + strandat 1187.120 kb on - strandat 1187.120 kb on - strandat 1187.120 kb on - strandat 1187.169 kb on + strand, within ABZR87_RS05585at 1187.169 kb on + strand, within ABZR87_RS05585at 1187.169 kb on + strand, within ABZR87_RS05585at 1187.169 kb on + strand, within ABZR87_RS05585at 1187.170 kb on - strand, within ABZR87_RS05585at 1187.170 kb on - strand, within ABZR87_RS05585at 1187.170 kb on - strand, within ABZR87_RS05585at 1187.170 kb on - strand, within ABZR87_RS05585at 1187.260 kb on + strand, within ABZR87_RS05585at 1187.261 kb on - strand, within ABZR87_RS05585at 1187.261 kb on - strand, within ABZR87_RS05585at 1187.307 kb on + strand, within ABZR87_RS05585at 1187.307 kb on + strand, within ABZR87_RS05585at 1187.308 kb on - strand, within ABZR87_RS05585at 1187.308 kb on - strand, within ABZR87_RS05585at 1187.308 kb on - strand, within ABZR87_RS05585at 1187.308 kb on - strand, within ABZR87_RS05585at 1187.308 kb on - strand, within ABZR87_RS05585at 1187.308 kb on - strand, within ABZR87_RS05585at 1187.416 kb on + strand, within ABZR87_RS05585at 1187.416 kb on + strand, within ABZR87_RS05585at 1187.417 kb on - strand, within ABZR87_RS05585at 1187.417 kb on - strand, within ABZR87_RS05585at 1187.482 kb on + strand, within ABZR87_RS05585at 1187.482 kb on + strand, within ABZR87_RS05585at 1187.483 kb on - strand, within ABZR87_RS05585at 1187.483 kb on - strand, within ABZR87_RS05585at 1187.483 kb on - strand, within ABZR87_RS05585at 1187.546 kb on - strand, within ABZR87_RS05585at 1187.616 kb on + strand, within ABZR87_RS05585at 1187.616 kb on + strand, within ABZR87_RS05585at 1187.616 kb on + strand, within ABZR87_RS05585at 1187.617 kb on - strand, within ABZR87_RS05585at 1187.617 kb on - strand, within ABZR87_RS05585at 1187.617 kb on - strand, within ABZR87_RS05585at 1187.617 kb on - strand, within ABZR87_RS05585at 1187.617 kb on - strand, within ABZR87_RS05585at 1187.617 kb on - strand, within ABZR87_RS05585at 1187.697 kb on + strand, within ABZR87_RS05585at 1187.697 kb on + strand, within ABZR87_RS05585at 1187.698 kb on - strand, within ABZR87_RS05585at 1187.725 kb on + strand, within ABZR87_RS05585at 1187.725 kb on + strand, within ABZR87_RS05585at 1187.725 kb on + strand, within ABZR87_RS05585at 1187.725 kb on + strand, within ABZR87_RS05585at 1187.725 kb on + strand, within ABZR87_RS05585at 1187.725 kb on + strand, within ABZR87_RS05585at 1187.725 kb on + strand, within ABZR87_RS05585at 1187.725 kb on + strand, within ABZR87_RS05585at 1187.725 kb on + strand, within ABZR87_RS05585at 1187.725 kb on + strand, within ABZR87_RS05585at 1187.725 kb on + strand, within ABZR87_RS05585at 1187.725 kb on + strand, within ABZR87_RS05585at 1187.725 kb on + strand, within ABZR87_RS05585at 1187.726 kb on - strand, within ABZR87_RS05585at 1187.726 kb on - strand, within ABZR87_RS05585at 1187.726 kb on - strand, within ABZR87_RS05585at 1187.726 kb on - strand, within ABZR87_RS05585at 1187.726 kb on - strand, within ABZR87_RS05585at 1187.726 kb on - strand, within ABZR87_RS05585at 1187.726 kb on - strand, within ABZR87_RS05585at 1187.726 kb on - strand, within ABZR87_RS05585at 1187.726 kb on - strand, within ABZR87_RS05585at 1187.726 kb on - strand, within ABZR87_RS05585at 1187.726 kb on - strand, within ABZR87_RS05585at 1187.726 kb on - strand, within ABZR87_RS05585at 1187.726 kb on - strand, within ABZR87_RS05585at 1187.727 kb on + strand, within ABZR87_RS05585at 1187.727 kb on + strand, within ABZR87_RS05585at 1187.727 kb on + strand, within ABZR87_RS05585at 1187.727 kb on + strand, within ABZR87_RS05585at 1187.727 kb on + strand, within ABZR87_RS05585at 1187.727 kb on + strand, within ABZR87_RS05585at 1187.727 kb on + strand, within ABZR87_RS05585at 1187.727 kb on + strand, within ABZR87_RS05585at 1187.728 kb on - strand, within ABZR87_RS05585at 1187.728 kb on - strand, within ABZR87_RS05585at 1187.728 kb on - strand, within ABZR87_RS05585at 1187.737 kb on + strand, within ABZR87_RS05585at 1187.737 kb on + strand, within ABZR87_RS05585at 1187.737 kb on + strand, within ABZR87_RS05585at 1187.737 kb on + strand, within ABZR87_RS05585at 1187.738 kb on - strand, within ABZR87_RS05585at 1187.738 kb on - strand, within ABZR87_RS05585at 1187.738 kb on - strand, within ABZR87_RS05585at 1187.782 kb on + strand, within ABZR87_RS05585at 1187.782 kb on + strand, within ABZR87_RS05585at 1187.782 kb on + strand, within ABZR87_RS05585at 1187.782 kb on + strand, within ABZR87_RS05585at 1187.782 kb on + strand, within ABZR87_RS05585at 1187.782 kb on + strand, within ABZR87_RS05585at 1187.782 kb on + strand, within ABZR87_RS05585at 1187.782 kb on + strand, within ABZR87_RS05585at 1187.782 kb on + strand, within ABZR87_RS05585at 1187.782 kb on + strand, within ABZR87_RS05585at 1187.782 kb on + strand, within ABZR87_RS05585at 1187.783 kb on - strand, within ABZR87_RS05585at 1187.783 kb on - strand, within ABZR87_RS05585at 1187.783 kb on - strand, within ABZR87_RS05585at 1187.783 kb on - strand, within ABZR87_RS05585at 1187.783 kb on - strand, within ABZR87_RS05585at 1187.783 kb on - strand, within ABZR87_RS05585at 1187.783 kb on - strand, within ABZR87_RS05585at 1187.783 kb on - strand, within ABZR87_RS05585at 1187.783 kb on - strand, within ABZR87_RS05585at 1187.783 kb on - strand, within ABZR87_RS05585at 1187.869 kb on + strandat 1187.869 kb on + strandat 1188.256 kb on - strandat 1188.256 kb on - strandat 1188.533 kb on + strandat 1188.533 kb on + strandat 1188.534 kb on - strandat 1188.534 kb on - strandat 1188.534 kb on - strandat 1188.537 kb on + strandat 1188.537 kb on + strandat 1188.537 kb on + strandat 1188.537 kb on + strandat 1188.537 kb on + strandat 1188.538 kb on - strandat 1188.567 kb on - strandat 1188.602 kb on + strand, within ABZR87_RS05590at 1188.603 kb on - strand, within ABZR87_RS05590at 1188.624 kb on + strand, within ABZR87_RS05590at 1188.690 kb on + strand, within ABZR87_RS05590at 1188.690 kb on + strand, within ABZR87_RS05590at 1188.896 kb on + strand, within ABZR87_RS05590

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-2
remove
1,186,109 + +1.1
1,186,109 + +0.9
1,186,109 + +0.1
1,186,109 + +0.8
1,186,109 + +0.5
1,186,109 + +0.2
1,186,110 - -0.5
1,186,332 + ABZR87_RS05580 0.20 -0.6
1,186,683 - ABZR87_RS05580 0.60 -1.2
1,186,803 + ABZR87_RS05580 0.73 -0.1
1,186,804 - ABZR87_RS05580 0.73 -0.2
1,187,082 + -1.1
1,187,083 - -0.5
1,187,083 - +1.5
1,187,083 - -1.4
1,187,083 - -0.1
1,187,083 - -0.1
1,187,119 + +0.4
1,187,120 - +0.9
1,187,120 - -0.0
1,187,120 - -0.1
1,187,169 + ABZR87_RS05585 0.10 +0.2
1,187,169 + ABZR87_RS05585 0.10 -1.3
1,187,169 + ABZR87_RS05585 0.10 +0.6
1,187,169 + ABZR87_RS05585 0.10 +0.1
1,187,170 - ABZR87_RS05585 0.10 +0.4
1,187,170 - ABZR87_RS05585 0.10 +2.5
1,187,170 - ABZR87_RS05585 0.10 +0.2
1,187,170 - ABZR87_RS05585 0.10 +0.6
1,187,260 + ABZR87_RS05585 0.21 -0.0
1,187,261 - ABZR87_RS05585 0.21 +1.0
1,187,261 - ABZR87_RS05585 0.21 +1.3
1,187,307 + ABZR87_RS05585 0.27 +0.4
1,187,307 + ABZR87_RS05585 0.27 +0.5
1,187,308 - ABZR87_RS05585 0.27 +0.6
1,187,308 - ABZR87_RS05585 0.27 -0.4
1,187,308 - ABZR87_RS05585 0.27 -0.3
1,187,308 - ABZR87_RS05585 0.27 +0.7
1,187,308 - ABZR87_RS05585 0.27 +1.5
1,187,308 - ABZR87_RS05585 0.27 -0.8
1,187,416 + ABZR87_RS05585 0.40 -1.0
1,187,416 + ABZR87_RS05585 0.40 -1.9
1,187,417 - ABZR87_RS05585 0.40 +0.8
1,187,417 - ABZR87_RS05585 0.40 +0.2
1,187,482 + ABZR87_RS05585 0.48 -0.1
1,187,482 + ABZR87_RS05585 0.48 -0.9
1,187,483 - ABZR87_RS05585 0.48 +0.2
1,187,483 - ABZR87_RS05585 0.48 +0.1
1,187,483 - ABZR87_RS05585 0.48 +0.3
1,187,546 - ABZR87_RS05585 0.56 -0.1
1,187,616 + ABZR87_RS05585 0.64 +0.9
1,187,616 + ABZR87_RS05585 0.64 -1.3
1,187,616 + ABZR87_RS05585 0.64 -0.3
1,187,617 - ABZR87_RS05585 0.64 +0.0
1,187,617 - ABZR87_RS05585 0.64 -0.3
1,187,617 - ABZR87_RS05585 0.64 -3.1
1,187,617 - ABZR87_RS05585 0.64 -1.2
1,187,617 - ABZR87_RS05585 0.64 -0.3
1,187,617 - ABZR87_RS05585 0.64 +1.9
1,187,697 + ABZR87_RS05585 0.74 -0.9
1,187,697 + ABZR87_RS05585 0.74 +0.7
1,187,698 - ABZR87_RS05585 0.74 -0.8
1,187,725 + ABZR87_RS05585 0.77 +0.4
1,187,725 + ABZR87_RS05585 0.77 -0.4
1,187,725 + ABZR87_RS05585 0.77 +0.4
1,187,725 + ABZR87_RS05585 0.77 +0.4
1,187,725 + ABZR87_RS05585 0.77 +0.9
1,187,725 + ABZR87_RS05585 0.77 -0.2
1,187,725 + ABZR87_RS05585 0.77 -0.1
1,187,725 + ABZR87_RS05585 0.77 -0.5
1,187,725 + ABZR87_RS05585 0.77 -0.8
1,187,725 + ABZR87_RS05585 0.77 +0.9
1,187,725 + ABZR87_RS05585 0.77 +0.2
1,187,725 + ABZR87_RS05585 0.77 +3.5
1,187,725 + ABZR87_RS05585 0.77 -0.1
1,187,726 - ABZR87_RS05585 0.77 +1.1
1,187,726 - ABZR87_RS05585 0.77 -0.2
1,187,726 - ABZR87_RS05585 0.77 +1.8
1,187,726 - ABZR87_RS05585 0.77 -0.7
1,187,726 - ABZR87_RS05585 0.77 +1.0
1,187,726 - ABZR87_RS05585 0.77 -0.8
1,187,726 - ABZR87_RS05585 0.77 -0.5
1,187,726 - ABZR87_RS05585 0.77 -0.1
1,187,726 - ABZR87_RS05585 0.77 -0.2
1,187,726 - ABZR87_RS05585 0.77 +1.5
1,187,726 - ABZR87_RS05585 0.77 +0.4
1,187,726 - ABZR87_RS05585 0.77 -0.1
1,187,726 - ABZR87_RS05585 0.77 +0.2
1,187,727 + ABZR87_RS05585 0.77 -0.3
1,187,727 + ABZR87_RS05585 0.77 +0.2
1,187,727 + ABZR87_RS05585 0.77 +0.9
1,187,727 + ABZR87_RS05585 0.77 +0.0
1,187,727 + ABZR87_RS05585 0.77 -0.2
1,187,727 + ABZR87_RS05585 0.77 -0.4
1,187,727 + ABZR87_RS05585 0.77 +0.1
1,187,727 + ABZR87_RS05585 0.77 +1.3
1,187,728 - ABZR87_RS05585 0.78 -1.3
1,187,728 - ABZR87_RS05585 0.78 -1.1
1,187,728 - ABZR87_RS05585 0.78 -0.4
1,187,737 + ABZR87_RS05585 0.79 +0.1
1,187,737 + ABZR87_RS05585 0.79 -0.7
1,187,737 + ABZR87_RS05585 0.79 +0.6
1,187,737 + ABZR87_RS05585 0.79 -0.1
1,187,738 - ABZR87_RS05585 0.79 +0.4
1,187,738 - ABZR87_RS05585 0.79 +0.2
1,187,738 - ABZR87_RS05585 0.79 -0.9
1,187,782 + ABZR87_RS05585 0.84 -0.1
1,187,782 + ABZR87_RS05585 0.84 +0.6
1,187,782 + ABZR87_RS05585 0.84 +0.1
1,187,782 + ABZR87_RS05585 0.84 -1.3
1,187,782 + ABZR87_RS05585 0.84 -0.8
1,187,782 + ABZR87_RS05585 0.84 -0.2
1,187,782 + ABZR87_RS05585 0.84 -0.2
1,187,782 + ABZR87_RS05585 0.84 +0.2
1,187,782 + ABZR87_RS05585 0.84 +0.7
1,187,782 + ABZR87_RS05585 0.84 +0.9
1,187,782 + ABZR87_RS05585 0.84 +0.9
1,187,783 - ABZR87_RS05585 0.84 +0.7
1,187,783 - ABZR87_RS05585 0.84 -0.1
1,187,783 - ABZR87_RS05585 0.84 -0.1
1,187,783 - ABZR87_RS05585 0.84 +0.2
1,187,783 - ABZR87_RS05585 0.84 -0.2
1,187,783 - ABZR87_RS05585 0.84 -0.0
1,187,783 - ABZR87_RS05585 0.84 -0.3
1,187,783 - ABZR87_RS05585 0.84 -0.2
1,187,783 - ABZR87_RS05585 0.84 +0.5
1,187,783 - ABZR87_RS05585 0.84 +0.1
1,187,869 + +1.0
1,187,869 + -0.3
1,188,256 - +0.5
1,188,256 - -0.3
1,188,533 + -1.5
1,188,533 + -1.7
1,188,534 - -0.8
1,188,534 - -2.0
1,188,534 - -0.8
1,188,537 + -1.5
1,188,537 + -0.8
1,188,537 + -1.6
1,188,537 + -0.6
1,188,537 + -0.9
1,188,538 - -0.5
1,188,567 - -1.2
1,188,602 + ABZR87_RS05590 0.13 +1.9
1,188,603 - ABZR87_RS05590 0.13 -0.6
1,188,624 + ABZR87_RS05590 0.16 +1.9
1,188,690 + ABZR87_RS05590 0.26 +0.9
1,188,690 + ABZR87_RS05590 0.26 -0.1
1,188,896 + ABZR87_RS05590 0.56 +0.9

Or see this region's nucleotide sequence