Experiment: Dictyostellum sp.mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS19365 and ABZR87_RS19370 overlap by 4 nucleotides ABZR87_RS19370 and ABZR87_RS19375 are separated by 10 nucleotides ABZR87_RS19375 and ABZR87_RS19380 overlap by 4 nucleotides
ABZR87_RS19365: ABZR87_RS19365 - glycosyltransferase, at 711,084 to 712,409
_RS19365
ABZR87_RS19370: ABZR87_RS19370 - hypothetical protein, at 712,406 to 713,449
_RS19370
ABZR87_RS19375: ABZR87_RS19375 - hypothetical protein, at 713,460 to 714,446
_RS19375
ABZR87_RS19380: ABZR87_RS19380 - polysaccharide deacetylase family protein, at 714,443 to 716,293
_RS19380
Position (kb) 712
713
714 Strain fitness (log2 ratio) -1
0
1
2
3 at 711.522 kb on + strand, within ABZR87_RS19365 at 711.523 kb on - strand, within ABZR87_RS19365 at 711.523 kb on - strand, within ABZR87_RS19365 at 711.523 kb on - strand, within ABZR87_RS19365 at 711.666 kb on + strand, within ABZR87_RS19365 at 711.714 kb on + strand, within ABZR87_RS19365 at 711.714 kb on + strand, within ABZR87_RS19365 at 711.840 kb on + strand, within ABZR87_RS19365 at 711.861 kb on + strand, within ABZR87_RS19365 at 712.074 kb on + strand, within ABZR87_RS19365 at 712.075 kb on - strand, within ABZR87_RS19365 at 712.075 kb on - strand, within ABZR87_RS19365 at 712.075 kb on - strand, within ABZR87_RS19365 at 712.075 kb on - strand, within ABZR87_RS19365 at 712.132 kb on - strand, within ABZR87_RS19365 at 712.132 kb on - strand, within ABZR87_RS19365 at 712.183 kb on - strand, within ABZR87_RS19365 at 712.183 kb on - strand, within ABZR87_RS19365 at 712.629 kb on - strand, within ABZR87_RS19370 at 712.794 kb on - strand, within ABZR87_RS19370 at 713.132 kb on + strand, within ABZR87_RS19370 at 713.133 kb on - strand, within ABZR87_RS19370 at 713.133 kb on - strand, within ABZR87_RS19370 at 713.416 kb on + strand at 713.619 kb on + strand, within ABZR87_RS19375 at 713.619 kb on + strand, within ABZR87_RS19375 at 713.620 kb on - strand, within ABZR87_RS19375 at 713.949 kb on + strand, within ABZR87_RS19375 at 713.949 kb on + strand, within ABZR87_RS19375 at 713.949 kb on + strand, within ABZR87_RS19375 at 713.950 kb on - strand, within ABZR87_RS19375 at 713.950 kb on - strand, within ABZR87_RS19375 at 714.021 kb on + strand, within ABZR87_RS19375 at 714.021 kb on + strand, within ABZR87_RS19375 at 714.085 kb on - strand, within ABZR87_RS19375 at 714.091 kb on - strand, within ABZR87_RS19375 at 714.177 kb on + strand, within ABZR87_RS19375 at 714.178 kb on - strand, within ABZR87_RS19375
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-1 remove 711,522 + ABZR87_RS19365 0.33 +1.0 711,523 - ABZR87_RS19365 0.33 -0.2 711,523 - ABZR87_RS19365 0.33 -0.6 711,523 - ABZR87_RS19365 0.33 -0.8 711,666 + ABZR87_RS19365 0.44 +0.1 711,714 + ABZR87_RS19365 0.48 -1.2 711,714 + ABZR87_RS19365 0.48 -1.2 711,840 + ABZR87_RS19365 0.57 +1.1 711,861 + ABZR87_RS19365 0.59 -1.2 712,074 + ABZR87_RS19365 0.75 +1.4 712,075 - ABZR87_RS19365 0.75 +0.3 712,075 - ABZR87_RS19365 0.75 -0.2 712,075 - ABZR87_RS19365 0.75 +1.1 712,075 - ABZR87_RS19365 0.75 +1.4 712,132 - ABZR87_RS19365 0.79 -0.6 712,132 - ABZR87_RS19365 0.79 +0.8 712,183 - ABZR87_RS19365 0.83 +0.0 712,183 - ABZR87_RS19365 0.83 +1.3 712,629 - ABZR87_RS19370 0.21 -0.4 712,794 - ABZR87_RS19370 0.37 +2.9 713,132 + ABZR87_RS19370 0.70 +0.8 713,133 - ABZR87_RS19370 0.70 +0.2 713,133 - ABZR87_RS19370 0.70 +0.8 713,416 + +0.1 713,619 + ABZR87_RS19375 0.16 +1.4 713,619 + ABZR87_RS19375 0.16 -0.1 713,620 - ABZR87_RS19375 0.16 +0.6 713,949 + ABZR87_RS19375 0.50 +1.4 713,949 + ABZR87_RS19375 0.50 -0.3 713,949 + ABZR87_RS19375 0.50 -0.5 713,950 - ABZR87_RS19375 0.50 -0.2 713,950 - ABZR87_RS19375 0.50 -0.7 714,021 + ABZR87_RS19375 0.57 -0.7 714,021 + ABZR87_RS19375 0.57 +3.0 714,085 - ABZR87_RS19375 0.63 +1.8 714,091 - ABZR87_RS19375 0.64 -0.8 714,177 + ABZR87_RS19375 0.73 -0.6 714,178 - ABZR87_RS19375 0.73 -0.4
Or see this region's nucleotide sequence