Experiment: Dictyostellum sp.mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS03250 and ABZR87_RS03255 are separated by 381 nucleotides ABZR87_RS03255 and ABZR87_RS03260 are separated by 165 nucleotides ABZR87_RS03260 and ABZR87_RS03265 are separated by 325 nucleotides ABZR87_RS03265 and ABZR87_RS03270 are separated by 71 nucleotides
ABZR87_RS03250: ABZR87_RS03250 - c-type cytochrome, at 685,379 to 686,272
_RS03250
ABZR87_RS03255: ABZR87_RS03255 - tRNA-Arg, at 686,654 to 686,729
_RS03255
ABZR87_RS03260: ABZR87_RS03260 - histidinol-phosphate transaminase, at 686,895 to 687,962
_RS03260
ABZR87_RS03265: ABZR87_RS03265 - high-potential iron-sulfur protein, at 688,288 to 688,599
_RS03265
ABZR87_RS03270: ABZR87_RS03270 - two-component system response regulator KdpE, at 688,671 to 689,375
_RS03270
Position (kb) 686
687
688 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 686.011 kb on + strand, within ABZR87_RS03250 at 686.011 kb on + strand, within ABZR87_RS03250 at 686.012 kb on - strand, within ABZR87_RS03250 at 686.012 kb on - strand, within ABZR87_RS03250 at 686.012 kb on - strand, within ABZR87_RS03250 at 686.013 kb on + strand, within ABZR87_RS03250 at 686.013 kb on + strand, within ABZR87_RS03250 at 686.013 kb on + strand, within ABZR87_RS03250 at 686.013 kb on + strand, within ABZR87_RS03250 at 686.013 kb on + strand, within ABZR87_RS03250 at 686.013 kb on + strand, within ABZR87_RS03250 at 686.013 kb on + strand, within ABZR87_RS03250 at 686.013 kb on + strand, within ABZR87_RS03250 at 686.013 kb on + strand, within ABZR87_RS03250 at 686.014 kb on - strand, within ABZR87_RS03250 at 686.014 kb on - strand, within ABZR87_RS03250 at 686.014 kb on - strand, within ABZR87_RS03250 at 686.014 kb on - strand, within ABZR87_RS03250 at 686.014 kb on - strand, within ABZR87_RS03250 at 686.014 kb on - strand, within ABZR87_RS03250 at 686.014 kb on - strand, within ABZR87_RS03250 at 686.014 kb on - strand, within ABZR87_RS03250 at 686.034 kb on + strand, within ABZR87_RS03250 at 686.034 kb on + strand, within ABZR87_RS03250 at 686.034 kb on + strand, within ABZR87_RS03250 at 686.034 kb on + strand, within ABZR87_RS03250 at 686.035 kb on - strand, within ABZR87_RS03250 at 686.035 kb on - strand, within ABZR87_RS03250 at 686.035 kb on - strand, within ABZR87_RS03250 at 686.035 kb on - strand, within ABZR87_RS03250 at 686.154 kb on + strand, within ABZR87_RS03250 at 686.154 kb on + strand, within ABZR87_RS03250 at 686.154 kb on + strand, within ABZR87_RS03250 at 686.154 kb on + strand, within ABZR87_RS03250 at 686.154 kb on + strand, within ABZR87_RS03250 at 686.154 kb on + strand, within ABZR87_RS03250 at 686.154 kb on + strand, within ABZR87_RS03250 at 686.154 kb on + strand, within ABZR87_RS03250 at 686.154 kb on + strand, within ABZR87_RS03250 at 686.154 kb on + strand, within ABZR87_RS03250 at 686.154 kb on + strand, within ABZR87_RS03250 at 686.155 kb on - strand, within ABZR87_RS03250 at 686.155 kb on - strand, within ABZR87_RS03250 at 686.155 kb on - strand, within ABZR87_RS03250 at 686.155 kb on - strand, within ABZR87_RS03250 at 686.155 kb on - strand, within ABZR87_RS03250 at 686.155 kb on - strand, within ABZR87_RS03250 at 686.155 kb on - strand, within ABZR87_RS03250 at 686.452 kb on + strand at 686.453 kb on - strand at 686.463 kb on + strand at 686.463 kb on + strand at 686.463 kb on + strand at 686.463 kb on + strand at 686.463 kb on + strand at 686.463 kb on + strand at 686.464 kb on - strand at 686.464 kb on - strand at 686.464 kb on - strand at 686.464 kb on - strand at 686.464 kb on - strand at 686.466 kb on - strand at 686.466 kb on - strand at 686.505 kb on - strand at 686.505 kb on - strand at 686.755 kb on + strand at 686.756 kb on - strand at 686.904 kb on + strand at 686.905 kb on - strand at 686.917 kb on + strand at 686.937 kb on + strand at 686.937 kb on + strand at 686.937 kb on + strand at 686.937 kb on + strand at 686.937 kb on + strand at 686.937 kb on + strand at 686.937 kb on + strand at 686.937 kb on + strand at 686.937 kb on + strand at 686.937 kb on + strand at 686.937 kb on + strand at 686.937 kb on + strand at 686.937 kb on + strand at 686.938 kb on - strand at 686.938 kb on - strand at 686.938 kb on - strand at 686.938 kb on - strand at 686.938 kb on - strand at 686.938 kb on - strand at 686.984 kb on + strand at 686.984 kb on + strand at 686.985 kb on - strand at 687.022 kb on + strand, within ABZR87_RS03260 at 687.023 kb on - strand, within ABZR87_RS03260 at 687.234 kb on + strand, within ABZR87_RS03260 at 687.235 kb on - strand, within ABZR87_RS03260 at 687.243 kb on + strand, within ABZR87_RS03260 at 687.243 kb on + strand, within ABZR87_RS03260 at 687.244 kb on - strand, within ABZR87_RS03260 at 687.252 kb on + strand, within ABZR87_RS03260 at 687.252 kb on + strand, within ABZR87_RS03260 at 687.252 kb on + strand, within ABZR87_RS03260 at 687.253 kb on - strand, within ABZR87_RS03260 at 687.253 kb on - strand, within ABZR87_RS03260 at 687.253 kb on - strand, within ABZR87_RS03260 at 687.265 kb on - strand, within ABZR87_RS03260 at 687.324 kb on + strand, within ABZR87_RS03260 at 687.324 kb on + strand, within ABZR87_RS03260 at 687.324 kb on + strand, within ABZR87_RS03260 at 687.324 kb on + strand, within ABZR87_RS03260 at 687.324 kb on + strand, within ABZR87_RS03260 at 687.325 kb on - strand, within ABZR87_RS03260 at 687.325 kb on - strand, within ABZR87_RS03260 at 687.325 kb on - strand, within ABZR87_RS03260 at 687.325 kb on - strand, within ABZR87_RS03260 at 687.325 kb on - strand, within ABZR87_RS03260 at 687.325 kb on - strand, within ABZR87_RS03260 at 687.453 kb on + strand, within ABZR87_RS03260 at 687.453 kb on + strand, within ABZR87_RS03260 at 687.453 kb on + strand, within ABZR87_RS03260 at 687.453 kb on + strand, within ABZR87_RS03260 at 687.453 kb on + strand, within ABZR87_RS03260 at 687.453 kb on + strand, within ABZR87_RS03260 at 687.453 kb on + strand, within ABZR87_RS03260 at 687.453 kb on + strand, within ABZR87_RS03260 at 687.453 kb on + strand, within ABZR87_RS03260 at 687.454 kb on - strand, within ABZR87_RS03260 at 687.454 kb on - strand, within ABZR87_RS03260 at 687.454 kb on - strand, within ABZR87_RS03260 at 687.454 kb on - strand, within ABZR87_RS03260 at 687.454 kb on - strand, within ABZR87_RS03260 at 687.454 kb on - strand, within ABZR87_RS03260 at 687.454 kb on - strand, within ABZR87_RS03260 at 687.454 kb on - strand, within ABZR87_RS03260 at 687.454 kb on - strand, within ABZR87_RS03260 at 687.454 kb on - strand, within ABZR87_RS03260 at 687.454 kb on - strand, within ABZR87_RS03260 at 687.454 kb on - strand, within ABZR87_RS03260 at 687.669 kb on + strand, within ABZR87_RS03260 at 687.669 kb on + strand, within ABZR87_RS03260 at 687.670 kb on - strand, within ABZR87_RS03260 at 687.670 kb on - strand, within ABZR87_RS03260 at 687.684 kb on + strand, within ABZR87_RS03260 at 687.684 kb on + strand, within ABZR87_RS03260 at 687.684 kb on + strand, within ABZR87_RS03260 at 687.685 kb on - strand, within ABZR87_RS03260 at 687.685 kb on - strand, within ABZR87_RS03260 at 687.685 kb on - strand, within ABZR87_RS03260 at 687.685 kb on - strand, within ABZR87_RS03260 at 687.685 kb on - strand, within ABZR87_RS03260 at 687.685 kb on - strand, within ABZR87_RS03260 at 687.685 kb on - strand, within ABZR87_RS03260 at 687.685 kb on - strand, within ABZR87_RS03260 at 687.685 kb on - strand, within ABZR87_RS03260 at 687.934 kb on + strand at 687.935 kb on - strand at 687.935 kb on - strand at 687.935 kb on - strand at 687.960 kb on + strand at 687.961 kb on - strand at 687.961 kb on - strand at 687.961 kb on - strand at 687.964 kb on + strand at 687.964 kb on + strand at 687.964 kb on + strand at 687.964 kb on + strand at 687.964 kb on + strand at 687.965 kb on - strand at 687.965 kb on - strand at 687.965 kb on - strand at 688.108 kb on + strand at 688.108 kb on + strand at 688.109 kb on - strand at 688.109 kb on - strand at 688.122 kb on - strand at 688.122 kb on - strand at 688.139 kb on + strand at 688.139 kb on + strand at 688.139 kb on + strand at 688.139 kb on + strand at 688.219 kb on - strand at 688.420 kb on + strand, within ABZR87_RS03265 at 688.421 kb on - strand, within ABZR87_RS03265 at 688.501 kb on + strand, within ABZR87_RS03265 at 688.501 kb on + strand, within ABZR87_RS03265 at 688.502 kb on - strand, within ABZR87_RS03265 at 688.502 kb on - strand, within ABZR87_RS03265 at 688.502 kb on - strand, within ABZR87_RS03265 at 688.502 kb on - strand, within ABZR87_RS03265 at 688.667 kb on + strand at 688.667 kb on + strand at 688.667 kb on + strand at 688.667 kb on + strand at 688.667 kb on + strand at 688.667 kb on + strand at 688.668 kb on - strand at 688.668 kb on - strand at 688.668 kb on - strand at 688.668 kb on - strand at 688.668 kb on - strand at 688.668 kb on - strand at 688.668 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-1 remove 686,011 + ABZR87_RS03250 0.71 +1.2 686,011 + ABZR87_RS03250 0.71 -1.8 686,012 - ABZR87_RS03250 0.71 +0.9 686,012 - ABZR87_RS03250 0.71 +0.1 686,012 - ABZR87_RS03250 0.71 -1.2 686,013 + ABZR87_RS03250 0.71 -0.0 686,013 + ABZR87_RS03250 0.71 +0.3 686,013 + ABZR87_RS03250 0.71 -0.7 686,013 + ABZR87_RS03250 0.71 +0.2 686,013 + ABZR87_RS03250 0.71 -0.4 686,013 + ABZR87_RS03250 0.71 -1.3 686,013 + ABZR87_RS03250 0.71 -0.6 686,013 + ABZR87_RS03250 0.71 -0.2 686,013 + ABZR87_RS03250 0.71 -0.4 686,014 - ABZR87_RS03250 0.71 +0.4 686,014 - ABZR87_RS03250 0.71 -0.5 686,014 - ABZR87_RS03250 0.71 -0.4 686,014 - ABZR87_RS03250 0.71 +0.4 686,014 - ABZR87_RS03250 0.71 +0.4 686,014 - ABZR87_RS03250 0.71 -0.1 686,014 - ABZR87_RS03250 0.71 -0.4 686,014 - ABZR87_RS03250 0.71 -0.5 686,034 + ABZR87_RS03250 0.73 +0.4 686,034 + ABZR87_RS03250 0.73 +3.2 686,034 + ABZR87_RS03250 0.73 -1.9 686,034 + ABZR87_RS03250 0.73 +0.7 686,035 - ABZR87_RS03250 0.73 -0.1 686,035 - ABZR87_RS03250 0.73 -0.1 686,035 - ABZR87_RS03250 0.73 +0.7 686,035 - ABZR87_RS03250 0.73 +1.3 686,154 + ABZR87_RS03250 0.87 +0.6 686,154 + ABZR87_RS03250 0.87 +0.9 686,154 + ABZR87_RS03250 0.87 +0.5 686,154 + ABZR87_RS03250 0.87 +0.3 686,154 + ABZR87_RS03250 0.87 +0.1 686,154 + ABZR87_RS03250 0.87 -0.7 686,154 + ABZR87_RS03250 0.87 -0.5 686,154 + ABZR87_RS03250 0.87 -1.3 686,154 + ABZR87_RS03250 0.87 -0.6 686,154 + ABZR87_RS03250 0.87 +2.2 686,154 + ABZR87_RS03250 0.87 -1.4 686,155 - ABZR87_RS03250 0.87 -1.3 686,155 - ABZR87_RS03250 0.87 +0.8 686,155 - ABZR87_RS03250 0.87 -0.4 686,155 - ABZR87_RS03250 0.87 +0.4 686,155 - ABZR87_RS03250 0.87 +0.3 686,155 - ABZR87_RS03250 0.87 -0.2 686,155 - ABZR87_RS03250 0.87 +0.6 686,452 + +0.5 686,453 - +0.1 686,463 + +0.7 686,463 + -0.4 686,463 + -0.8 686,463 + +1.1 686,463 + +0.0 686,463 + +0.4 686,464 - -0.1 686,464 - -0.3 686,464 - -0.7 686,464 - +0.5 686,464 - -0.3 686,466 - +0.6 686,466 - -0.9 686,505 - +0.4 686,505 - +0.3 686,755 + -0.4 686,756 - +0.1 686,904 + +0.1 686,905 - +0.2 686,917 + -2.2 686,937 + -0.6 686,937 + +0.9 686,937 + +0.7 686,937 + -0.2 686,937 + -0.4 686,937 + +0.4 686,937 + -1.0 686,937 + -0.9 686,937 + +0.6 686,937 + +0.7 686,937 + +0.5 686,937 + +0.5 686,937 + +0.2 686,938 - +0.2 686,938 - -0.6 686,938 - +0.5 686,938 - +0.1 686,938 - -0.2 686,938 - +0.8 686,984 + -0.1 686,984 + +0.7 686,985 - -0.7 687,022 + ABZR87_RS03260 0.12 -0.7 687,023 - ABZR87_RS03260 0.12 +1.0 687,234 + ABZR87_RS03260 0.32 +0.3 687,235 - ABZR87_RS03260 0.32 +0.1 687,243 + ABZR87_RS03260 0.33 -0.3 687,243 + ABZR87_RS03260 0.33 -1.8 687,244 - ABZR87_RS03260 0.33 -0.4 687,252 + ABZR87_RS03260 0.33 +1.3 687,252 + ABZR87_RS03260 0.33 -0.5 687,252 + ABZR87_RS03260 0.33 +0.1 687,253 - ABZR87_RS03260 0.34 -0.4 687,253 - ABZR87_RS03260 0.34 +0.5 687,253 - ABZR87_RS03260 0.34 +0.8 687,265 - ABZR87_RS03260 0.35 -1.0 687,324 + ABZR87_RS03260 0.40 -0.2 687,324 + ABZR87_RS03260 0.40 -0.9 687,324 + ABZR87_RS03260 0.40 +1.7 687,324 + ABZR87_RS03260 0.40 +0.3 687,324 + ABZR87_RS03260 0.40 -0.3 687,325 - ABZR87_RS03260 0.40 +0.8 687,325 - ABZR87_RS03260 0.40 +0.6 687,325 - ABZR87_RS03260 0.40 +0.7 687,325 - ABZR87_RS03260 0.40 +1.3 687,325 - ABZR87_RS03260 0.40 +0.0 687,325 - ABZR87_RS03260 0.40 +0.9 687,453 + ABZR87_RS03260 0.52 -0.0 687,453 + ABZR87_RS03260 0.52 -0.4 687,453 + ABZR87_RS03260 0.52 +0.5 687,453 + ABZR87_RS03260 0.52 +0.8 687,453 + ABZR87_RS03260 0.52 +1.1 687,453 + ABZR87_RS03260 0.52 -0.1 687,453 + ABZR87_RS03260 0.52 -0.3 687,453 + ABZR87_RS03260 0.52 +0.7 687,453 + ABZR87_RS03260 0.52 -1.2 687,454 - ABZR87_RS03260 0.52 +0.8 687,454 - ABZR87_RS03260 0.52 -1.0 687,454 - ABZR87_RS03260 0.52 +0.0 687,454 - ABZR87_RS03260 0.52 -0.8 687,454 - ABZR87_RS03260 0.52 -0.5 687,454 - ABZR87_RS03260 0.52 -0.4 687,454 - ABZR87_RS03260 0.52 +0.1 687,454 - ABZR87_RS03260 0.52 -0.1 687,454 - ABZR87_RS03260 0.52 -1.6 687,454 - ABZR87_RS03260 0.52 +0.1 687,454 - ABZR87_RS03260 0.52 +0.4 687,454 - ABZR87_RS03260 0.52 +0.6 687,669 + ABZR87_RS03260 0.72 +1.1 687,669 + ABZR87_RS03260 0.72 -0.1 687,670 - ABZR87_RS03260 0.73 +1.5 687,670 - ABZR87_RS03260 0.73 +1.4 687,684 + ABZR87_RS03260 0.74 +0.8 687,684 + ABZR87_RS03260 0.74 +0.2 687,684 + ABZR87_RS03260 0.74 +0.6 687,685 - ABZR87_RS03260 0.74 -0.4 687,685 - ABZR87_RS03260 0.74 -0.1 687,685 - ABZR87_RS03260 0.74 +0.2 687,685 - ABZR87_RS03260 0.74 +1.0 687,685 - ABZR87_RS03260 0.74 -0.4 687,685 - ABZR87_RS03260 0.74 -0.2 687,685 - ABZR87_RS03260 0.74 -0.8 687,685 - ABZR87_RS03260 0.74 +0.2 687,685 - ABZR87_RS03260 0.74 -0.0 687,934 + +0.2 687,935 - +0.0 687,935 - +0.6 687,935 - -0.3 687,960 + -0.3 687,961 - +0.7 687,961 - +0.7 687,961 - -0.2 687,964 + +0.0 687,964 + +0.2 687,964 + -0.5 687,964 + +0.5 687,964 + +0.1 687,965 - -1.8 687,965 - -1.2 687,965 - -0.2 688,108 + -0.2 688,108 + -0.9 688,109 - +0.0 688,109 - -0.7 688,122 - -0.6 688,122 - +0.3 688,139 + -0.9 688,139 + +0.4 688,139 + -0.5 688,139 + +1.1 688,219 - +0.5 688,420 + ABZR87_RS03265 0.42 +0.4 688,421 - ABZR87_RS03265 0.43 +2.7 688,501 + ABZR87_RS03265 0.68 -0.0 688,501 + ABZR87_RS03265 0.68 +0.6 688,502 - ABZR87_RS03265 0.69 -0.8 688,502 - ABZR87_RS03265 0.69 +0.9 688,502 - ABZR87_RS03265 0.69 +0.1 688,502 - ABZR87_RS03265 0.69 -0.2 688,667 + +0.5 688,667 + +0.1 688,667 + -0.3 688,667 + +0.6 688,667 + -1.9 688,667 + -0.4 688,668 - -1.0 688,668 - -0.1 688,668 - -0.5 688,668 - -0.4 688,668 - -0.9 688,668 - +0.3 688,668 - +0.6
Or see this region's nucleotide sequence