Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_4070

Experiment: nitrate (N)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	nitrate (N)
4,239,540	+				-4.2
4,239,540	+				-3.2
4,239,540	+				-1.2
4,239,540	+				-3.4
4,239,541	+				-2.3
4,239,541	-				-0.0
4,239,541	-				+0.2
4,239,541	-				+1.4
4,239,541	-				-1.1
4,239,542	+				-0.1
4,239,542	+				-0.3
4,240,185	-				-0.7
4,240,185	-				-1.7
4,240,185	-				+1.7
4,240,187	-				-0.6
4,240,523	+		Psest_4070	0.12	-1.0
4,240,523	+		Psest_4070	0.12	-1.1
4,240,523	+		Psest_4070	0.12	-0.1
4,240,524	-		Psest_4070	0.12	-0.3
4,240,524	-		Psest_4070	0.12	-0.7
4,240,800	-		Psest_4070	0.23	-0.5
4,241,078	+		Psest_4070	0.34	-0.8
4,241,079	-		Psest_4070	0.34	-1.0
4,241,105	+		Psest_4070	0.35	-0.8
4,241,170	+		Psest_4070	0.38	-1.6
4,241,281	-		Psest_4070	0.42	-1.7
4,241,285	+		Psest_4070	0.42	-1.7
4,241,558	+		Psest_4070	0.53	-1.7
4,241,558	+		Psest_4070	0.53	-1.2
4,241,558	+		Psest_4070	0.53	+0.2
4,241,558	+		Psest_4070	0.53	-0.4
4,241,558	+		Psest_4070	0.53	-1.4
4,241,559	-		Psest_4070	0.53	-0.5
4,241,559	-		Psest_4070	0.53	+0.2
4,241,559	-		Psest_4070	0.53	+0.6
4,241,559	-		Psest_4070	0.53	+0.0
4,241,559	-		Psest_4070	0.53	-0.4
4,241,559	-		Psest_4070	0.53	-0.6
4,241,559	-		Psest_4070	0.53	-0.2
4,241,936	+		Psest_4070	0.69	-0.7
4,242,083	+		Psest_4070	0.74	-1.6
4,242,084	-		Psest_4070	0.74	-0.7
4,242,084	-		Psest_4070	0.74	-0.3
4,242,084	-		Psest_4070	0.74	-1.3
4,242,084	-		Psest_4070	0.74	-1.6
4,242,137	+		Psest_4070	0.77	+0.6
4,242,137	+		Psest_4070	0.77	-0.2
4,242,137	+		Psest_4070	0.77	-0.7
4,242,138	-		Psest_4070	0.77	-1.2
4,242,140	+		Psest_4070	0.77	-3.0
4,242,140	+		Psest_4070	0.77	+1.0
4,242,140	+		Psest_4070	0.77	-2.8
4,242,140	+		Psest_4070	0.77	-0.5
4,242,140	+		Psest_4070	0.77	-1.6
4,242,140	+		Psest_4070	0.77	+0.6
4,242,141	-		Psest_4070	0.77	-2.0
4,242,141	-		Psest_4070	0.77	-1.2
4,242,141	-		Psest_4070	0.77	-0.8
4,242,141	-		Psest_4070	0.77	+1.2
4,242,141	-		Psest_4070	0.77	-0.9
4,242,149	+		Psest_4070	0.77	-1.3
4,242,160	-		Psest_4070	0.77	-1.8
4,242,160	-		Psest_4070	0.77	-2.4
4,242,176	+		Psest_4070	0.78	-0.8
4,242,203	+		Psest_4070	0.79	-1.2
4,242,203	+		Psest_4070	0.79	-1.1
4,242,203	+		Psest_4070	0.79	-0.8
4,242,203	+		Psest_4070	0.79	-3.4
4,242,203	+		Psest_4070	0.79	-0.2
4,242,203	+		Psest_4070	0.79	-1.0
4,242,203	+		Psest_4070	0.79	-1.6
4,242,203	+		Psest_4070	0.79	-1.1
4,242,203	+		Psest_4070	0.79	-0.2
4,242,203	+		Psest_4070	0.79	-0.1
4,242,204	-		Psest_4070	0.79	-0.5
4,242,204	-		Psest_4070	0.79	-3.7
4,242,204	-		Psest_4070	0.79	-0.1
4,242,204	-		Psest_4070	0.79	-2.2
4,242,204	-		Psest_4070	0.79	+0.1
4,242,204	-		Psest_4070	0.79	-1.1
4,242,204	-		Psest_4070	0.79	+0.4
4,242,204	-		Psest_4070	0.79	-1.5
4,242,236	+		Psest_4070	0.81	-2.2
4,242,236	+		Psest_4070	0.81	-1.0
4,242,236	+		Psest_4070	0.81	-0.5
4,242,236	+		Psest_4070	0.81	-2.2
4,242,237	-		Psest_4070	0.81	-1.0
4,242,351	-		Psest_4070	0.85	-1.6
4,242,351	-		Psest_4070	0.85	+0.1
4,242,568	+				-2.4
4,242,569	-				-3.0
4,242,569	-				-2.5
4,242,614	+				-0.7
4,242,614	+				-1.3
4,242,614	+				-1.3
4,242,615	-				-0.3
4,242,615	-				-1.2
4,242,615	-				-0.4
4,242,761	+				-0.5
4,242,784	+				-0.2
4,242,784	+				+0.1
4,242,784	+				-2.2
4,242,785	-				+0.2
4,242,785	-				+0.4
4,242,817	+				+1.1
4,242,998	-				-0.4
4,242,998	-				-0.5
4,242,999	+				+0.2
4,242,999	+				-0.9
4,242,999	+				+0.2
4,243,000	-				-2.3
4,243,000	-				+0.5
4,243,000	-				+1.0
4,243,038	+		Psest_4071	0.10	+0.4
4,243,039	-		Psest_4071	0.10	+0.9
4,243,050	+		Psest_4071	0.11	+0.4
4,243,051	-		Psest_4071	0.11	-1.2
4,243,111	-		Psest_4071	0.14	-0.7
4,243,113	+		Psest_4071	0.14	-0.4
4,243,113	+		Psest_4071	0.14	-0.2
4,243,113	+		Psest_4071	0.14	-0.6
4,243,113	+		Psest_4071	0.14	+0.4
4,243,113	+		Psest_4071	0.14	-0.8
4,243,113	+		Psest_4071	0.14	+1.1
4,243,114	-		Psest_4071	0.14	+1.9
4,243,114	-		Psest_4071	0.14	-1.3
4,243,114	-		Psest_4071	0.14	+1.4
4,243,114	-		Psest_4071	0.14	-0.8
4,243,222	-		Psest_4071	0.20	-1.3
4,243,383	+		Psest_4071	0.28	+0.5
4,243,497	+		Psest_4071	0.34	+0.4
4,243,497	+		Psest_4071	0.34	-1.2
4,243,497	+		Psest_4071	0.34	+0.1
4,243,497	+		Psest_4071	0.34	-0.8
4,243,498	-		Psest_4071	0.34	-1.0
4,243,498	-		Psest_4071	0.34	+1.6
4,243,498	-		Psest_4071	0.34	-2.0
4,243,498	-		Psest_4071	0.34	-0.8
4,243,498	-		Psest_4071	0.34	+1.0
4,243,498	-		Psest_4071	0.34	-0.0
4,243,533	+		Psest_4071	0.36	+1.6
4,243,701	+		Psest_4071	0.45	+0.7
4,243,701	+		Psest_4071	0.45	+0.0
4,243,701	+		Psest_4071	0.45	+0.6
4,243,701	+		Psest_4071	0.45	+0.4
4,243,701	+		Psest_4071	0.45	+0.5
4,243,701	+		Psest_4071	0.45	-0.2
4,243,702	-		Psest_4071	0.45	+0.2
4,243,702	-		Psest_4071	0.45	+0.2
4,243,702	-		Psest_4071	0.45	+2.3
4,243,702	-		Psest_4071	0.45	+0.6
4,243,702	-		Psest_4071	0.45	-2.7
4,243,702	-		Psest_4071	0.45	+0.6
4,243,702	-		Psest_4071	0.45	-1.4
4,243,702	-		Psest_4071	0.45	+0.1
4,243,702	-		Psest_4071	0.45	+0.9
4,243,702	-		Psest_4071	0.45	+0.2
4,243,720	-		Psest_4071	0.46	-0.4