Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_04639

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_04638 and H281DRAFT_04639 are separated by 5 nucleotidesH281DRAFT_04639 and H281DRAFT_04640 are separated by 68 nucleotides H281DRAFT_04638: H281DRAFT_04638 - periplasmic chaperone for outer membrane proteins SurA, at 38,645 to 40,054 _04638 H281DRAFT_04639: H281DRAFT_04639 - 4-hydroxythreonine-4-phosphate dehydrogenase (EC 1.1.1.262), at 40,060 to 41,070 _04639 H281DRAFT_04640: H281DRAFT_04640 - dimethyladenosine transferase, at 41,139 to 41,969 _04640 Position (kb) 40 41 42Strain fitness (log2 ratio) -2 -1 0 1at 40.052 kb on + strandat 40.052 kb on + strandat 40.052 kb on + strandat 40.248 kb on - strand, within H281DRAFT_04639at 40.351 kb on + strand, within H281DRAFT_04639at 40.351 kb on + strand, within H281DRAFT_04639at 40.480 kb on + strand, within H281DRAFT_04639at 40.481 kb on - strand, within H281DRAFT_04639at 40.633 kb on - strand, within H281DRAFT_04639at 40.884 kb on - strandat 40.898 kb on - strand, within H281DRAFT_04639at 40.898 kb on - strand, within H281DRAFT_04639at 41.126 kb on + strandat 41.180 kb on + strandat 41.486 kb on - strandat 41.508 kb on + strand, within H281DRAFT_04640at 41.509 kb on - strand, within H281DRAFT_04640at 41.665 kb on - strand, within H281DRAFT_04640at 41.844 kb on - strand, within H281DRAFT_04640at 41.931 kb on + strandat 41.974 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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40,052 + +0.7
40,052 + +0.5
40,052 + -0.1
40,248 - H281DRAFT_04639 0.19 -1.4
40,351 + H281DRAFT_04639 0.29 -0.2
40,351 + H281DRAFT_04639 0.29 -0.6
40,480 + H281DRAFT_04639 0.42 -0.5
40,481 - H281DRAFT_04639 0.42 -0.8
40,633 - H281DRAFT_04639 0.57 -2.1
40,884 - -1.0
40,898 - H281DRAFT_04639 0.83 +0.7
40,898 - H281DRAFT_04639 0.83 -0.1
41,126 + -0.3
41,180 + -0.2
41,486 - +0.3
41,508 + H281DRAFT_04640 0.44 +1.0
41,509 - H281DRAFT_04640 0.45 +0.1
41,665 - H281DRAFT_04640 0.63 +0.0
41,844 - H281DRAFT_04640 0.85 -1.8
41,931 + -1.9
41,974 + -0.1

Or see this region's nucleotide sequence