Experiment: McCas_H2_complete Antimycin A 0.01 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS04165 and MMP_RS04170 are separated by 139 nucleotides MMP_RS04170 and MMP_RS04175 overlap by 8 nucleotides
MMP_RS04165: MMP_RS04165 - TetR/AcrR family transcriptional regulator, at 791,640 to 792,218
_RS04165
MMP_RS04170: MMP_RS04170 - DUF362 domain-containing protein, at 792,358 to 793,440
_RS04170
MMP_RS04175: MMP_RS04175 - permease, at 793,433 to 794,335
_RS04175
Position (kb) 792
793
794 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3
4 at 791.389 kb on + strand at 791.443 kb on - strand at 791.444 kb on + strand at 791.445 kb on - strand at 791.446 kb on + strand at 791.446 kb on + strand at 791.501 kb on - strand at 791.504 kb on - strand at 791.513 kb on - strand at 791.514 kb on + strand at 791.517 kb on - strand at 791.521 kb on - strand at 791.552 kb on + strand at 791.566 kb on + strand at 791.569 kb on - strand at 791.569 kb on - strand at 791.570 kb on + strand at 791.582 kb on + strand at 791.590 kb on + strand at 791.592 kb on - strand at 791.598 kb on + strand at 791.635 kb on - strand at 791.636 kb on + strand at 791.636 kb on + strand at 791.636 kb on + strand at 791.637 kb on - strand at 791.637 kb on - strand at 791.637 kb on - strand at 791.638 kb on + strand at 791.638 kb on + strand at 791.638 kb on + strand at 791.638 kb on + strand at 791.638 kb on + strand at 791.640 kb on + strand at 792.005 kb on + strand, within MMP_RS04165 at 792.016 kb on + strand, within MMP_RS04165 at 792.074 kb on + strand, within MMP_RS04165 at 792.124 kb on - strand, within MMP_RS04165 at 792.171 kb on + strand at 792.273 kb on + strand at 792.273 kb on + strand at 792.295 kb on - strand at 792.341 kb on - strand at 792.365 kb on - strand at 792.379 kb on + strand at 792.398 kb on - strand at 792.401 kb on - strand at 792.405 kb on + strand at 792.426 kb on - strand at 792.427 kb on + strand at 792.427 kb on + strand at 792.427 kb on + strand at 792.462 kb on - strand at 792.488 kb on - strand, within MMP_RS04170 at 792.489 kb on + strand, within MMP_RS04170 at 792.493 kb on + strand, within MMP_RS04170 at 792.493 kb on + strand, within MMP_RS04170 at 792.495 kb on - strand, within MMP_RS04170 at 792.495 kb on - strand, within MMP_RS04170 at 792.531 kb on - strand, within MMP_RS04170 at 792.534 kb on - strand, within MMP_RS04170 at 792.617 kb on + strand, within MMP_RS04170 at 792.651 kb on + strand, within MMP_RS04170 at 792.688 kb on + strand, within MMP_RS04170 at 792.691 kb on - strand, within MMP_RS04170 at 792.691 kb on - strand, within MMP_RS04170 at 792.695 kb on - strand, within MMP_RS04170 at 792.696 kb on + strand, within MMP_RS04170 at 792.722 kb on - strand, within MMP_RS04170 at 792.729 kb on + strand, within MMP_RS04170 at 792.795 kb on - strand, within MMP_RS04170 at 792.803 kb on - strand, within MMP_RS04170 at 792.822 kb on - strand, within MMP_RS04170 at 792.828 kb on - strand, within MMP_RS04170 at 793.060 kb on - strand, within MMP_RS04170 at 793.061 kb on + strand, within MMP_RS04170 at 793.062 kb on - strand, within MMP_RS04170 at 793.062 kb on - strand, within MMP_RS04170 at 793.098 kb on - strand, within MMP_RS04170 at 793.152 kb on + strand, within MMP_RS04170 at 793.172 kb on - strand, within MMP_RS04170 at 793.172 kb on - strand, within MMP_RS04170 at 793.173 kb on + strand, within MMP_RS04170 at 793.173 kb on + strand, within MMP_RS04170 at 793.190 kb on - strand, within MMP_RS04170 at 793.190 kb on - strand, within MMP_RS04170 at 793.190 kb on - strand, within MMP_RS04170 at 793.194 kb on - strand, within MMP_RS04170 at 793.195 kb on + strand, within MMP_RS04170 at 793.252 kb on + strand, within MMP_RS04170 at 793.301 kb on - strand, within MMP_RS04170 at 793.371 kb on - strand at 793.444 kb on + strand at 793.475 kb on - strand at 793.476 kb on + strand at 793.661 kb on - strand, within MMP_RS04175 at 793.662 kb on + strand, within MMP_RS04175 at 793.670 kb on + strand, within MMP_RS04175 at 793.693 kb on - strand, within MMP_RS04175 at 793.741 kb on - strand, within MMP_RS04175 at 793.750 kb on + strand, within MMP_RS04175 at 793.770 kb on + strand, within MMP_RS04175 at 793.770 kb on + strand, within MMP_RS04175 at 793.770 kb on + strand, within MMP_RS04175 at 793.860 kb on - strand, within MMP_RS04175 at 793.906 kb on - strand, within MMP_RS04175 at 793.906 kb on - strand, within MMP_RS04175 at 793.945 kb on + strand, within MMP_RS04175 at 793.967 kb on + strand, within MMP_RS04175 at 793.986 kb on + strand, within MMP_RS04175 at 794.027 kb on - strand, within MMP_RS04175 at 794.027 kb on - strand, within MMP_RS04175 at 794.028 kb on + strand, within MMP_RS04175 at 794.028 kb on + strand, within MMP_RS04175 at 794.113 kb on + strand, within MMP_RS04175 at 794.114 kb on - strand, within MMP_RS04175 at 794.131 kb on - strand, within MMP_RS04175 at 794.146 kb on - strand, within MMP_RS04175 at 794.147 kb on + strand, within MMP_RS04175 at 794.274 kb on + strand at 794.285 kb on + strand at 794.291 kb on + strand at 794.291 kb on + strand at 794.293 kb on + strand at 794.333 kb on - strand at 794.333 kb on - strand at 794.334 kb on + strand at 794.368 kb on - strand at 794.373 kb on + strand at 794.395 kb on + strand at 794.399 kb on + strand at 794.409 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_H2_complete Antimycin A 0.01 mM remove 791,389 + -2.8 791,443 - -1.6 791,444 + +0.9 791,445 - -0.0 791,446 + +0.5 791,446 + +2.1 791,501 - -0.2 791,504 - +0.5 791,513 - -0.0 791,514 + -1.2 791,517 - -1.0 791,521 - +0.6 791,552 + +0.7 791,566 + -1.5 791,569 - -2.7 791,569 - -1.7 791,570 + -1.2 791,582 + -0.4 791,590 + +0.8 791,592 - -2.3 791,598 + +0.2 791,635 - -3.3 791,636 + +1.5 791,636 + +0.3 791,636 + -0.5 791,637 - +0.1 791,637 - +0.6 791,637 - -0.1 791,638 + +1.0 791,638 + -0.1 791,638 + +0.2 791,638 + -1.5 791,638 + -0.2 791,640 + +1.3 792,005 + MMP_RS04165 0.63 +1.1 792,016 + MMP_RS04165 0.65 -0.6 792,074 + MMP_RS04165 0.75 -0.7 792,124 - MMP_RS04165 0.84 +1.0 792,171 + +1.4 792,273 + -0.3 792,273 + +0.5 792,295 - +0.8 792,341 - +1.5 792,365 - -1.0 792,379 + -2.1 792,398 - -2.0 792,401 - -1.0 792,405 + +0.5 792,426 - +0.7 792,427 + +0.3 792,427 + +0.4 792,427 + -0.4 792,462 - -0.5 792,488 - MMP_RS04170 0.12 +1.7 792,489 + MMP_RS04170 0.12 +0.7 792,493 + MMP_RS04170 0.12 -0.2 792,493 + MMP_RS04170 0.12 -0.2 792,495 - MMP_RS04170 0.13 +0.3 792,495 - MMP_RS04170 0.13 +1.7 792,531 - MMP_RS04170 0.16 -0.4 792,534 - MMP_RS04170 0.16 -0.9 792,617 + MMP_RS04170 0.24 -1.8 792,651 + MMP_RS04170 0.27 -0.2 792,688 + MMP_RS04170 0.30 +1.0 792,691 - MMP_RS04170 0.31 +1.6 792,691 - MMP_RS04170 0.31 -1.6 792,695 - MMP_RS04170 0.31 +1.5 792,696 + MMP_RS04170 0.31 +0.7 792,722 - MMP_RS04170 0.34 +1.4 792,729 + MMP_RS04170 0.34 +0.4 792,795 - MMP_RS04170 0.40 +1.4 792,803 - MMP_RS04170 0.41 +1.0 792,822 - MMP_RS04170 0.43 -0.5 792,828 - MMP_RS04170 0.43 -2.1 793,060 - MMP_RS04170 0.65 +0.1 793,061 + MMP_RS04170 0.65 +0.2 793,062 - MMP_RS04170 0.65 -0.7 793,062 - MMP_RS04170 0.65 -1.8 793,098 - MMP_RS04170 0.68 +2.0 793,152 + MMP_RS04170 0.73 +0.3 793,172 - MMP_RS04170 0.75 +0.3 793,172 - MMP_RS04170 0.75 -0.0 793,173 + MMP_RS04170 0.75 -1.0 793,173 + MMP_RS04170 0.75 +0.3 793,190 - MMP_RS04170 0.77 -0.9 793,190 - MMP_RS04170 0.77 +1.0 793,190 - MMP_RS04170 0.77 +0.9 793,194 - MMP_RS04170 0.77 +0.5 793,195 + MMP_RS04170 0.77 +0.3 793,252 + MMP_RS04170 0.83 -0.9 793,301 - MMP_RS04170 0.87 -0.4 793,371 - +1.4 793,444 + -0.3 793,475 - +2.7 793,476 + +0.4 793,661 - MMP_RS04175 0.25 +0.7 793,662 + MMP_RS04175 0.25 -0.4 793,670 + MMP_RS04175 0.26 +0.6 793,693 - MMP_RS04175 0.29 +0.2 793,741 - MMP_RS04175 0.34 +0.4 793,750 + MMP_RS04175 0.35 -5.3 793,770 + MMP_RS04175 0.37 +4.4 793,770 + MMP_RS04175 0.37 -0.2 793,770 + MMP_RS04175 0.37 +0.5 793,860 - MMP_RS04175 0.47 -0.2 793,906 - MMP_RS04175 0.52 +1.3 793,906 - MMP_RS04175 0.52 +1.6 793,945 + MMP_RS04175 0.57 -0.5 793,967 + MMP_RS04175 0.59 +0.2 793,986 + MMP_RS04175 0.61 +0.9 794,027 - MMP_RS04175 0.66 +1.4 794,027 - MMP_RS04175 0.66 -1.6 794,028 + MMP_RS04175 0.66 +0.4 794,028 + MMP_RS04175 0.66 +0.5 794,113 + MMP_RS04175 0.75 -0.4 794,114 - MMP_RS04175 0.75 +0.7 794,131 - MMP_RS04175 0.77 -3.9 794,146 - MMP_RS04175 0.79 -1.3 794,147 + MMP_RS04175 0.79 -0.0 794,274 + +2.1 794,285 + -2.2 794,291 + -0.0 794,291 + +0.8 794,293 + +0.9 794,333 - +0.1 794,333 - +0.8 794,334 + +0.7 794,368 - +2.9 794,373 + +0.4 794,395 + -0.8 794,399 + -0.8 794,409 - +1.3
Or see this region's nucleotide sequence