Experiment: McCas_H2_complete Antimycin A 0.01 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS01860 and MMP_RS01865 are separated by 90 nucleotides MMP_RS01865 and MMP_RS01870 are separated by 126 nucleotides MMP_RS01870 and MMP_RS01875 are separated by 140 nucleotides MMP_RS01875 and MMP_RS01880 are separated by 1 nucleotides
MMP_RS01860: MMP_RS01860 - hypothetical protein, at 343,814 to 344,128
_RS01860
MMP_RS01865: MMP_RS01865 - GPR1/FUN34/YaaH family transporter, at 344,219 to 344,812
_RS01865
MMP_RS01870: MMP_RS01870 - acyl-CoA dehydratase activase, at 344,939 to 345,679
_RS01870
MMP_RS01875: MMP_RS01875 - N-acetyltransferase, at 345,820 to 346,410
_RS01875
MMP_RS01880: MMP_RS01880 - DegT/DnrJ/EryC1/StrS family aminotransferase, at 346,412 to 347,515
_RS01880
Position (kb) 344
345
346 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1
2
3
4 at 343.992 kb on + strand, within MMP_RS01860 at 344.004 kb on - strand, within MMP_RS01860 at 344.023 kb on - strand, within MMP_RS01860 at 344.096 kb on - strand, within MMP_RS01860 at 344.099 kb on + strand at 344.103 kb on + strand at 344.115 kb on + strand at 344.128 kb on - strand at 344.182 kb on - strand at 344.182 kb on - strand at 344.182 kb on - strand at 344.183 kb on + strand at 344.184 kb on - strand at 344.184 kb on - strand at 344.185 kb on + strand at 344.186 kb on - strand at 344.187 kb on + strand at 344.187 kb on + strand at 344.388 kb on + strand, within MMP_RS01865 at 344.790 kb on + strand at 344.819 kb on + strand at 344.856 kb on - strand at 344.858 kb on - strand at 344.858 kb on - strand at 344.858 kb on - strand at 344.858 kb on - strand at 344.859 kb on + strand at 344.859 kb on + strand at 344.860 kb on - strand at 344.860 kb on - strand at 344.860 kb on - strand at 344.860 kb on - strand at 344.861 kb on + strand at 344.861 kb on + strand at 344.873 kb on + strand at 344.884 kb on - strand at 344.910 kb on - strand at 344.913 kb on + strand at 344.924 kb on + strand at 345.036 kb on + strand, within MMP_RS01870 at 345.078 kb on + strand, within MMP_RS01870 at 345.139 kb on + strand, within MMP_RS01870 at 345.140 kb on - strand, within MMP_RS01870 at 345.141 kb on + strand, within MMP_RS01870 at 345.289 kb on - strand, within MMP_RS01870 at 345.372 kb on + strand, within MMP_RS01870 at 345.372 kb on + strand, within MMP_RS01870 at 345.485 kb on - strand, within MMP_RS01870 at 345.560 kb on - strand, within MMP_RS01870 at 345.605 kb on + strand, within MMP_RS01870 at 345.614 kb on - strand at 345.671 kb on - strand at 345.729 kb on - strand at 345.735 kb on - strand at 345.739 kb on - strand at 345.739 kb on - strand at 345.740 kb on + strand at 345.743 kb on - strand at 345.756 kb on + strand at 345.757 kb on - strand at 345.774 kb on - strand at 345.774 kb on - strand at 345.774 kb on - strand at 345.775 kb on + strand at 345.775 kb on + strand at 345.783 kb on - strand at 345.789 kb on + strand at 345.816 kb on + strand at 345.826 kb on + strand at 345.829 kb on - strand at 345.883 kb on + strand, within MMP_RS01875 at 345.958 kb on - strand, within MMP_RS01875 at 345.958 kb on - strand, within MMP_RS01875 at 345.959 kb on + strand, within MMP_RS01875 at 345.959 kb on + strand, within MMP_RS01875 at 345.959 kb on + strand, within MMP_RS01875 at 345.960 kb on - strand, within MMP_RS01875 at 345.961 kb on + strand, within MMP_RS01875 at 345.962 kb on - strand, within MMP_RS01875 at 345.962 kb on - strand, within MMP_RS01875 at 345.962 kb on - strand, within MMP_RS01875 at 345.963 kb on + strand, within MMP_RS01875 at 345.963 kb on + strand, within MMP_RS01875 at 345.967 kb on + strand, within MMP_RS01875 at 345.967 kb on + strand, within MMP_RS01875 at 346.016 kb on - strand, within MMP_RS01875 at 346.017 kb on + strand, within MMP_RS01875 at 346.018 kb on - strand, within MMP_RS01875 at 346.019 kb on + strand, within MMP_RS01875 at 346.019 kb on + strand, within MMP_RS01875 at 346.035 kb on + strand, within MMP_RS01875 at 346.067 kb on - strand, within MMP_RS01875 at 346.082 kb on - strand, within MMP_RS01875 at 346.104 kb on - strand, within MMP_RS01875 at 346.167 kb on + strand, within MMP_RS01875 at 346.247 kb on - strand, within MMP_RS01875 at 346.271 kb on - strand, within MMP_RS01875 at 346.272 kb on + strand, within MMP_RS01875 at 346.287 kb on - strand, within MMP_RS01875 at 346.287 kb on - strand, within MMP_RS01875 at 346.288 kb on + strand, within MMP_RS01875 at 346.288 kb on + strand, within MMP_RS01875 at 346.343 kb on + strand, within MMP_RS01875 at 346.350 kb on - strand, within MMP_RS01875 at 346.350 kb on - strand, within MMP_RS01875 at 346.353 kb on - strand at 346.365 kb on - strand at 346.366 kb on + strand at 346.366 kb on + strand at 346.366 kb on + strand at 346.367 kb on - strand at 346.367 kb on - strand at 346.408 kb on - strand at 346.411 kb on - strand at 346.412 kb on + strand at 346.421 kb on + strand at 346.437 kb on - strand at 346.438 kb on + strand at 346.462 kb on + strand at 346.545 kb on - strand, within MMP_RS01880 at 346.645 kb on - strand, within MMP_RS01880 at 346.675 kb on + strand, within MMP_RS01880
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_H2_complete Antimycin A 0.01 mM remove 343,992 + MMP_RS01860 0.57 +0.9 344,004 - MMP_RS01860 0.60 +0.1 344,023 - MMP_RS01860 0.66 +1.3 344,096 - MMP_RS01860 0.90 +1.7 344,099 + +0.3 344,103 + +1.3 344,115 + +0.6 344,128 - +0.3 344,182 - +0.6 344,182 - +0.4 344,182 - -1.6 344,183 + +0.9 344,184 - -0.0 344,184 - -0.0 344,185 + +0.9 344,186 - -1.5 344,187 + +0.5 344,187 + +1.2 344,388 + MMP_RS01865 0.28 +0.6 344,790 + +0.6 344,819 + +1.8 344,856 - +0.4 344,858 - -0.5 344,858 - +0.8 344,858 - -0.7 344,858 - -0.3 344,859 + +0.3 344,859 + +0.9 344,860 - -1.6 344,860 - +1.5 344,860 - -0.7 344,860 - +0.6 344,861 + -0.2 344,861 + +0.9 344,873 + +1.2 344,884 - +0.3 344,910 - +1.9 344,913 + +0.5 344,924 + +1.0 345,036 + MMP_RS01870 0.13 +1.6 345,078 + MMP_RS01870 0.19 -1.2 345,139 + MMP_RS01870 0.27 -1.1 345,140 - MMP_RS01870 0.27 -0.5 345,141 + MMP_RS01870 0.27 +0.1 345,289 - MMP_RS01870 0.47 +2.2 345,372 + MMP_RS01870 0.58 +0.6 345,372 + MMP_RS01870 0.58 +1.1 345,485 - MMP_RS01870 0.74 -1.0 345,560 - MMP_RS01870 0.84 +0.5 345,605 + MMP_RS01870 0.90 +0.5 345,614 - +0.2 345,671 - +1.1 345,729 - +0.4 345,735 - +0.3 345,739 - -0.1 345,739 - +0.5 345,740 + -0.1 345,743 - +1.8 345,756 + -0.1 345,757 - -5.1 345,774 - -0.6 345,774 - -0.1 345,774 - -0.4 345,775 + -2.5 345,775 + -1.4 345,783 - -0.6 345,789 + -0.3 345,816 + -4.2 345,826 + -5.4 345,829 - -4.2 345,883 + MMP_RS01875 0.11 -0.1 345,958 - MMP_RS01875 0.23 -4.6 345,958 - MMP_RS01875 0.23 -3.3 345,959 + MMP_RS01875 0.24 -3.2 345,959 + MMP_RS01875 0.24 -4.6 345,959 + MMP_RS01875 0.24 -6.2 345,960 - MMP_RS01875 0.24 +0.1 345,961 + MMP_RS01875 0.24 -1.7 345,962 - MMP_RS01875 0.24 -0.6 345,962 - MMP_RS01875 0.24 -2.3 345,962 - MMP_RS01875 0.24 -3.8 345,963 + MMP_RS01875 0.24 -5.3 345,963 + MMP_RS01875 0.24 -1.5 345,967 + MMP_RS01875 0.25 -1.7 345,967 + MMP_RS01875 0.25 +2.9 346,016 - MMP_RS01875 0.33 +4.6 346,017 + MMP_RS01875 0.33 -0.7 346,018 - MMP_RS01875 0.34 -5.6 346,019 + MMP_RS01875 0.34 -1.2 346,019 + MMP_RS01875 0.34 -1.3 346,035 + MMP_RS01875 0.36 -6.6 346,067 - MMP_RS01875 0.42 -5.3 346,082 - MMP_RS01875 0.44 -5.2 346,104 - MMP_RS01875 0.48 -3.3 346,167 + MMP_RS01875 0.59 -4.3 346,247 - MMP_RS01875 0.72 +4.2 346,271 - MMP_RS01875 0.76 -1.8 346,272 + MMP_RS01875 0.76 -1.4 346,287 - MMP_RS01875 0.79 -3.2 346,287 - MMP_RS01875 0.79 -1.2 346,288 + MMP_RS01875 0.79 -5.8 346,288 + MMP_RS01875 0.79 -1.1 346,343 + MMP_RS01875 0.88 +0.9 346,350 - MMP_RS01875 0.90 -2.6 346,350 - MMP_RS01875 0.90 -1.0 346,353 - -4.3 346,365 - -3.4 346,366 + -1.5 346,366 + -5.7 346,366 + -1.7 346,367 - -1.1 346,367 - -3.0 346,408 - -1.1 346,411 - -5.5 346,412 + -4.6 346,421 + -2.3 346,437 - -2.4 346,438 + -4.4 346,462 + -1.7 346,545 - MMP_RS01880 0.12 -4.2 346,645 - MMP_RS01880 0.21 -4.2 346,675 + MMP_RS01880 0.24 -4.3
Or see this region's nucleotide sequence