Experiment: Ra3_0.01
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS19315 and ABZR87_RS19320 overlap by 4 nucleotides ABZR87_RS19320 and ABZR87_RS19325 are separated by 4 nucleotides ABZR87_RS19325 and ABZR87_RS19330 overlap by 4 nucleotides
ABZR87_RS19315: ABZR87_RS19315 - FliI/YscN family ATPase, at 693,125 to 694,483
_RS19315
ABZR87_RS19320: ABZR87_RS19320 - hypothetical protein, at 694,480 to 694,974
_RS19320
ABZR87_RS19325: ABZR87_RS19325 - type III secretion system export apparatus subunit SctT, at 694,979 to 695,779
_RS19325
ABZR87_RS19330: ABZR87_RS19330 - EscU/YscU/HrcU family type III secretion system export apparatus switch protein, at 695,776 to 696,843
_RS19330
Position (kb) 694
695 Strain fitness (log2 ratio) -1
0
1 at 693.656 kb on - strand, within ABZR87_RS19315 at 693.894 kb on - strand, within ABZR87_RS19315 at 694.088 kb on + strand, within ABZR87_RS19315 at 694.088 kb on + strand, within ABZR87_RS19315 at 694.225 kb on + strand, within ABZR87_RS19315 at 694.226 kb on - strand, within ABZR87_RS19315 at 694.304 kb on + strand, within ABZR87_RS19315 at 694.697 kb on + strand, within ABZR87_RS19320 at 695.062 kb on + strand, within ABZR87_RS19325 at 695.063 kb on - strand, within ABZR87_RS19325 at 695.441 kb on + strand, within ABZR87_RS19325 at 695.442 kb on - strand, within ABZR87_RS19325 at 695.442 kb on - strand, within ABZR87_RS19325 at 695.442 kb on - strand, within ABZR87_RS19325 at 695.945 kb on + strand, within ABZR87_RS19330 at 695.945 kb on + strand, within ABZR87_RS19330
Per-strain Table
Position Strand Gene LocusTag Fraction Ra3_0.01 remove 693,656 - ABZR87_RS19315 0.39 -0.8 693,894 - ABZR87_RS19315 0.57 -0.9 694,088 + ABZR87_RS19315 0.71 +0.0 694,088 + ABZR87_RS19315 0.71 -0.0 694,225 + ABZR87_RS19315 0.81 -0.1 694,226 - ABZR87_RS19315 0.81 +0.5 694,304 + ABZR87_RS19315 0.87 +0.6 694,697 + ABZR87_RS19320 0.44 -0.7 695,062 + ABZR87_RS19325 0.10 +0.3 695,063 - ABZR87_RS19325 0.10 +0.1 695,441 + ABZR87_RS19325 0.58 -0.6 695,442 - ABZR87_RS19325 0.58 +0.3 695,442 - ABZR87_RS19325 0.58 +0.3 695,442 - ABZR87_RS19325 0.58 +0.5 695,945 + ABZR87_RS19330 0.16 -0.6 695,945 + ABZR87_RS19330 0.16 +0.4
Or see this region's nucleotide sequence