Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS16620

Experiment: Ra3_0.01

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS16615 and ABZR87_RS16620 are separated by 387 nucleotidesABZR87_RS16620 and ABZR87_RS16625 are separated by 38 nucleotides ABZR87_RS16615: ABZR87_RS16615 - response regulator transcription factor, at 76,365 to 77,102 _RS16615 ABZR87_RS16620: ABZR87_RS16620 - hypothetical protein, at 77,490 to 77,951 _RS16620 ABZR87_RS16625: ABZR87_RS16625 - methyl-accepting chemotaxis protein, at 77,990 to 79,609 _RS16625 Position (kb) 77 78Strain fitness (log2 ratio) -2 -1 0 1 2at 76.507 kb on + strand, within ABZR87_RS16615at 76.507 kb on + strand, within ABZR87_RS16615at 76.507 kb on + strand, within ABZR87_RS16615at 76.507 kb on + strand, within ABZR87_RS16615at 76.507 kb on + strand, within ABZR87_RS16615at 76.507 kb on + strand, within ABZR87_RS16615at 76.508 kb on - strand, within ABZR87_RS16615at 76.508 kb on - strand, within ABZR87_RS16615at 76.508 kb on - strand, within ABZR87_RS16615at 76.508 kb on - strand, within ABZR87_RS16615at 76.508 kb on - strand, within ABZR87_RS16615at 76.508 kb on - strand, within ABZR87_RS16615at 76.508 kb on - strand, within ABZR87_RS16615at 76.508 kb on - strand, within ABZR87_RS16615at 76.696 kb on + strand, within ABZR87_RS16615at 76.934 kb on + strand, within ABZR87_RS16615at 77.059 kb on + strandat 77.059 kb on + strandat 77.059 kb on + strandat 77.060 kb on - strandat 77.060 kb on - strandat 77.060 kb on - strandat 77.060 kb on - strandat 77.060 kb on - strandat 77.089 kb on - strandat 77.173 kb on - strandat 77.199 kb on + strandat 77.201 kb on - strandat 77.201 kb on - strandat 77.201 kb on - strandat 77.203 kb on - strandat 77.203 kb on - strandat 77.203 kb on - strandat 77.221 kb on + strandat 77.291 kb on + strandat 77.342 kb on + strandat 77.342 kb on + strandat 77.342 kb on + strandat 77.342 kb on + strandat 77.343 kb on - strandat 77.343 kb on - strandat 77.343 kb on - strandat 77.343 kb on - strandat 77.427 kb on + strandat 77.427 kb on + strandat 77.427 kb on + strandat 77.427 kb on + strandat 77.427 kb on + strandat 77.427 kb on + strandat 77.427 kb on + strandat 77.427 kb on + strandat 77.427 kb on + strandat 77.427 kb on + strandat 77.427 kb on + strandat 77.427 kb on + strandat 77.428 kb on - strandat 77.428 kb on - strandat 77.428 kb on - strandat 77.428 kb on - strandat 77.428 kb on - strandat 77.428 kb on - strandat 77.428 kb on - strandat 77.525 kb on + strandat 77.559 kb on - strand, within ABZR87_RS16620at 77.675 kb on + strand, within ABZR87_RS16620at 77.675 kb on + strand, within ABZR87_RS16620at 77.676 kb on - strand, within ABZR87_RS16620at 77.912 kb on + strandat 77.918 kb on + strandat 77.919 kb on - strandat 77.919 kb on - strandat 77.926 kb on + strandat 77.926 kb on + strandat 77.927 kb on - strandat 77.927 kb on - strandat 77.927 kb on - strandat 77.927 kb on - strandat 78.004 kb on + strandat 78.005 kb on - strandat 78.134 kb on + strandat 78.239 kb on + strand, within ABZR87_RS16625at 78.239 kb on + strand, within ABZR87_RS16625at 78.239 kb on + strand, within ABZR87_RS16625at 78.239 kb on + strand, within ABZR87_RS16625at 78.239 kb on + strand, within ABZR87_RS16625at 78.239 kb on + strand, within ABZR87_RS16625at 78.240 kb on - strand, within ABZR87_RS16625at 78.240 kb on - strand, within ABZR87_RS16625at 78.251 kb on + strand, within ABZR87_RS16625at 78.252 kb on - strand, within ABZR87_RS16625at 78.284 kb on + strand, within ABZR87_RS16625at 78.284 kb on + strand, within ABZR87_RS16625at 78.284 kb on + strand, within ABZR87_RS16625at 78.285 kb on - strand, within ABZR87_RS16625at 78.285 kb on - strand, within ABZR87_RS16625at 78.285 kb on - strand, within ABZR87_RS16625at 78.285 kb on - strand, within ABZR87_RS16625at 78.285 kb on - strand, within ABZR87_RS16625at 78.285 kb on - strand, within ABZR87_RS16625at 78.285 kb on - strand, within ABZR87_RS16625at 78.363 kb on - strand, within ABZR87_RS16625at 78.431 kb on + strand, within ABZR87_RS16625at 78.431 kb on + strand, within ABZR87_RS16625at 78.432 kb on - strand, within ABZR87_RS16625at 78.432 kb on - strand, within ABZR87_RS16625at 78.464 kb on + strand, within ABZR87_RS16625at 78.464 kb on + strand, within ABZR87_RS16625at 78.464 kb on + strand, within ABZR87_RS16625at 78.465 kb on - strand, within ABZR87_RS16625at 78.465 kb on - strand, within ABZR87_RS16625at 78.465 kb on - strand, within ABZR87_RS16625at 78.467 kb on + strand, within ABZR87_RS16625at 78.467 kb on + strand, within ABZR87_RS16625at 78.467 kb on + strand, within ABZR87_RS16625at 78.467 kb on + strand, within ABZR87_RS16625at 78.467 kb on + strand, within ABZR87_RS16625at 78.467 kb on + strand, within ABZR87_RS16625at 78.467 kb on + strand, within ABZR87_RS16625at 78.467 kb on + strand, within ABZR87_RS16625at 78.467 kb on + strand, within ABZR87_RS16625at 78.467 kb on + strand, within ABZR87_RS16625at 78.468 kb on - strand, within ABZR87_RS16625at 78.468 kb on - strand, within ABZR87_RS16625

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Per-strain Table

Position Strand Gene LocusTag Fraction Ra3_0.01
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76,507 + ABZR87_RS16615 0.19 -0.5
76,507 + ABZR87_RS16615 0.19 -0.1
76,507 + ABZR87_RS16615 0.19 +0.1
76,507 + ABZR87_RS16615 0.19 +0.7
76,507 + ABZR87_RS16615 0.19 -0.8
76,507 + ABZR87_RS16615 0.19 -0.1
76,508 - ABZR87_RS16615 0.19 -1.6
76,508 - ABZR87_RS16615 0.19 -0.0
76,508 - ABZR87_RS16615 0.19 +1.0
76,508 - ABZR87_RS16615 0.19 +0.5
76,508 - ABZR87_RS16615 0.19 -0.1
76,508 - ABZR87_RS16615 0.19 +0.8
76,508 - ABZR87_RS16615 0.19 +0.4
76,508 - ABZR87_RS16615 0.19 +0.5
76,696 + ABZR87_RS16615 0.45 +0.3
76,934 + ABZR87_RS16615 0.77 -0.1
77,059 + -0.1
77,059 + +0.3
77,059 + -1.5
77,060 - +0.4
77,060 - -0.5
77,060 - -0.7
77,060 - +1.5
77,060 - -0.9
77,089 - -0.8
77,173 - -0.2
77,199 + +0.1
77,201 - +0.0
77,201 - +0.2
77,201 - -0.1
77,203 - +0.2
77,203 - +1.3
77,203 - -0.3
77,221 + -0.7
77,291 + +0.7
77,342 + +0.8
77,342 + -0.6
77,342 + +0.4
77,342 + +0.8
77,343 - -0.6
77,343 - -0.3
77,343 - +0.4
77,343 - -1.3
77,427 + +0.7
77,427 + +0.4
77,427 + -0.0
77,427 + -0.3
77,427 + +0.2
77,427 + +1.1
77,427 + -0.2
77,427 + +0.1
77,427 + -0.8
77,427 + +0.5
77,427 + -2.1
77,427 + +0.1
77,428 - -0.7
77,428 - +0.0
77,428 - -1.0
77,428 - -0.3
77,428 - -0.5
77,428 - +0.1
77,428 - -0.7
77,525 + +0.0
77,559 - ABZR87_RS16620 0.15 -0.8
77,675 + ABZR87_RS16620 0.40 -1.6
77,675 + ABZR87_RS16620 0.40 -0.6
77,676 - ABZR87_RS16620 0.40 -0.2
77,912 + +0.5
77,918 + -0.9
77,919 - +0.7
77,919 - +0.7
77,926 + +0.1
77,926 + +2.5
77,927 - -0.2
77,927 - -0.3
77,927 - +0.3
77,927 - +0.3
78,004 + -0.5
78,005 - +0.0
78,134 + +0.0
78,239 + ABZR87_RS16625 0.15 +0.0
78,239 + ABZR87_RS16625 0.15 -0.4
78,239 + ABZR87_RS16625 0.15 +0.1
78,239 + ABZR87_RS16625 0.15 +0.2
78,239 + ABZR87_RS16625 0.15 +0.4
78,239 + ABZR87_RS16625 0.15 +0.1
78,240 - ABZR87_RS16625 0.15 -0.6
78,240 - ABZR87_RS16625 0.15 +0.1
78,251 + ABZR87_RS16625 0.16 +0.3
78,252 - ABZR87_RS16625 0.16 -0.5
78,284 + ABZR87_RS16625 0.18 -0.8
78,284 + ABZR87_RS16625 0.18 +0.1
78,284 + ABZR87_RS16625 0.18 -1.0
78,285 - ABZR87_RS16625 0.18 +0.0
78,285 - ABZR87_RS16625 0.18 -0.4
78,285 - ABZR87_RS16625 0.18 -0.4
78,285 - ABZR87_RS16625 0.18 -0.6
78,285 - ABZR87_RS16625 0.18 +1.7
78,285 - ABZR87_RS16625 0.18 +1.7
78,285 - ABZR87_RS16625 0.18 -2.0
78,363 - ABZR87_RS16625 0.23 +0.6
78,431 + ABZR87_RS16625 0.27 -0.0
78,431 + ABZR87_RS16625 0.27 +0.0
78,432 - ABZR87_RS16625 0.27 +0.7
78,432 - ABZR87_RS16625 0.27 -0.9
78,464 + ABZR87_RS16625 0.29 +0.1
78,464 + ABZR87_RS16625 0.29 +0.1
78,464 + ABZR87_RS16625 0.29 -0.6
78,465 - ABZR87_RS16625 0.29 -1.3
78,465 - ABZR87_RS16625 0.29 +0.7
78,465 - ABZR87_RS16625 0.29 -0.1
78,467 + ABZR87_RS16625 0.29 -0.3
78,467 + ABZR87_RS16625 0.29 +0.3
78,467 + ABZR87_RS16625 0.29 +0.1
78,467 + ABZR87_RS16625 0.29 +0.1
78,467 + ABZR87_RS16625 0.29 +0.5
78,467 + ABZR87_RS16625 0.29 +0.5
78,467 + ABZR87_RS16625 0.29 +0.3
78,467 + ABZR87_RS16625 0.29 -0.5
78,467 + ABZR87_RS16625 0.29 -0.8
78,467 + ABZR87_RS16625 0.29 -0.4
78,468 - ABZR87_RS16625 0.30 -0.1
78,468 - ABZR87_RS16625 0.30 -1.3

Or see this region's nucleotide sequence