Experiment: Ra3_0.01
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS08610 and ABZR87_RS08615 overlap by 8 nucleotides ABZR87_RS08615 and ABZR87_RS08620 overlap by 4 nucleotides ABZR87_RS08620 and ABZR87_RS08625 are separated by 65 nucleotides
ABZR87_RS08610: ABZR87_RS08610 - YqgE/AlgH family protein, at 1,831,917 to 1,832,489
_RS08610
ABZR87_RS08615: ABZR87_RS08615 - Holliday junction resolvase RuvX, at 1,832,482 to 1,832,913
_RS08615
ABZR87_RS08620: ABZR87_RS08620 - bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR, at 1,832,910 to 1,833,428
_RS08620
ABZR87_RS08625: ABZR87_RS08625 - aspartate carbamoyltransferase catalytic subunit, at 1,833,494 to 1,834,465
_RS08625
Position (kb)
1832
1833
1834 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1831.916 kb on + strand at 1832.010 kb on + strand, within ABZR87_RS08610 at 1832.010 kb on + strand, within ABZR87_RS08610 at 1832.010 kb on + strand, within ABZR87_RS08610 at 1832.010 kb on + strand, within ABZR87_RS08610 at 1832.145 kb on + strand, within ABZR87_RS08610 at 1832.145 kb on + strand, within ABZR87_RS08610 at 1832.145 kb on + strand, within ABZR87_RS08610 at 1832.202 kb on + strand, within ABZR87_RS08610 at 1832.450 kb on + strand at 1832.943 kb on + strand at 1832.943 kb on + strand at 1832.944 kb on - strand at 1833.070 kb on - strand, within ABZR87_RS08620 at 1833.105 kb on + strand, within ABZR87_RS08620 at 1833.105 kb on + strand, within ABZR87_RS08620 at 1833.105 kb on + strand, within ABZR87_RS08620 at 1833.318 kb on + strand, within ABZR87_RS08620 at 1833.466 kb on + strand at 1833.467 kb on - strand at 1833.542 kb on - strand at 1833.542 kb on - strand at 1833.801 kb on + strand, within ABZR87_RS08625 at 1833.878 kb on + strand, within ABZR87_RS08625 at 1833.879 kb on - strand, within ABZR87_RS08625 at 1833.987 kb on - strand, within ABZR87_RS08625 at 1833.987 kb on - strand, within ABZR87_RS08625 at 1834.260 kb on - strand, within ABZR87_RS08625 at 1834.271 kb on + strand, within ABZR87_RS08625 at 1834.272 kb on - strand, within ABZR87_RS08625
Per-strain Table
Position Strand Gene LocusTag Fraction Ra3_0.01 remove 1,831,916 + +0.5 1,832,010 + ABZR87_RS08610 0.16 -0.3 1,832,010 + ABZR87_RS08610 0.16 +0.9 1,832,010 + ABZR87_RS08610 0.16 -0.5 1,832,010 + ABZR87_RS08610 0.16 +0.5 1,832,145 + ABZR87_RS08610 0.40 -0.3 1,832,145 + ABZR87_RS08610 0.40 -0.1 1,832,145 + ABZR87_RS08610 0.40 -1.0 1,832,202 + ABZR87_RS08610 0.50 -0.8 1,832,450 + +0.5 1,832,943 + +0.2 1,832,943 + -0.2 1,832,944 - -1.7 1,833,070 - ABZR87_RS08620 0.31 +0.6 1,833,105 + ABZR87_RS08620 0.38 -0.9 1,833,105 + ABZR87_RS08620 0.38 +0.1 1,833,105 + ABZR87_RS08620 0.38 -0.8 1,833,318 + ABZR87_RS08620 0.79 -1.3 1,833,466 + -0.2 1,833,467 - +1.6 1,833,542 - -0.4 1,833,542 - -0.8 1,833,801 + ABZR87_RS08625 0.32 +1.6 1,833,878 + ABZR87_RS08625 0.40 +1.6 1,833,879 - ABZR87_RS08625 0.40 -2.8 1,833,987 - ABZR87_RS08625 0.51 +1.6 1,833,987 - ABZR87_RS08625 0.51 +2.2 1,834,260 - ABZR87_RS08625 0.79 +0.0 1,834,271 + ABZR87_RS08625 0.80 +0.0 1,834,272 - ABZR87_RS08625 0.80 +0.6
Or see this region's nucleotide sequence