Experiment: Ra3_0.01
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS03070 and ABZR87_RS03075 are separated by 276 nucleotides ABZR87_RS03075 and ABZR87_RS03080 are separated by 8 nucleotides
ABZR87_RS03070: ABZR87_RS03070 - glucan biosynthesis protein, at 644,103 to 645,716
_RS03070
ABZR87_RS03075: ABZR87_RS03075 - AGE family epimerase/isomerase, at 645,993 to 647,246
_RS03075
ABZR87_RS03080: ABZR87_RS03080 - MFS transporter, at 647,255 to 648,556
_RS03080
Position (kb) 645
646
647
648 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 645.029 kb on - strand, within ABZR87_RS03070 at 645.064 kb on + strand, within ABZR87_RS03070 at 645.064 kb on + strand, within ABZR87_RS03070 at 645.065 kb on - strand, within ABZR87_RS03070 at 645.077 kb on + strand, within ABZR87_RS03070 at 645.077 kb on + strand, within ABZR87_RS03070 at 645.077 kb on + strand, within ABZR87_RS03070 at 645.077 kb on + strand, within ABZR87_RS03070 at 645.078 kb on - strand, within ABZR87_RS03070 at 645.078 kb on - strand, within ABZR87_RS03070 at 645.184 kb on + strand, within ABZR87_RS03070 at 645.214 kb on + strand, within ABZR87_RS03070 at 645.215 kb on - strand, within ABZR87_RS03070 at 645.215 kb on - strand, within ABZR87_RS03070 at 645.331 kb on + strand, within ABZR87_RS03070 at 645.352 kb on + strand, within ABZR87_RS03070 at 645.352 kb on + strand, within ABZR87_RS03070 at 645.352 kb on + strand, within ABZR87_RS03070 at 645.353 kb on - strand, within ABZR87_RS03070 at 645.353 kb on - strand, within ABZR87_RS03070 at 645.353 kb on - strand, within ABZR87_RS03070 at 645.353 kb on - strand, within ABZR87_RS03070 at 645.353 kb on - strand, within ABZR87_RS03070 at 645.353 kb on - strand, within ABZR87_RS03070 at 645.353 kb on - strand, within ABZR87_RS03070 at 645.499 kb on + strand, within ABZR87_RS03070 at 645.500 kb on - strand, within ABZR87_RS03070 at 645.500 kb on - strand, within ABZR87_RS03070 at 645.500 kb on - strand, within ABZR87_RS03070 at 645.500 kb on - strand, within ABZR87_RS03070 at 645.897 kb on + strand at 645.897 kb on + strand at 645.897 kb on + strand at 645.897 kb on + strand at 645.897 kb on + strand at 645.897 kb on + strand at 645.898 kb on - strand at 645.898 kb on - strand at 645.898 kb on - strand at 645.898 kb on - strand at 645.898 kb on - strand at 645.898 kb on - strand at 645.904 kb on + strand at 645.904 kb on + strand at 645.904 kb on + strand at 645.904 kb on + strand at 645.904 kb on + strand at 645.904 kb on + strand at 645.904 kb on + strand at 645.904 kb on + strand at 645.904 kb on + strand at 645.904 kb on + strand at 645.904 kb on + strand at 645.904 kb on + strand at 645.904 kb on + strand at 645.904 kb on + strand at 645.905 kb on - strand at 645.905 kb on - strand at 645.905 kb on - strand at 645.905 kb on - strand at 645.905 kb on - strand at 645.905 kb on - strand at 645.905 kb on - strand at 645.905 kb on - strand at 645.905 kb on - strand at 645.905 kb on - strand at 645.905 kb on - strand at 645.905 kb on - strand at 645.908 kb on + strand at 645.908 kb on + strand at 645.908 kb on + strand at 645.908 kb on + strand at 645.908 kb on + strand at 645.908 kb on + strand at 645.908 kb on + strand at 645.908 kb on + strand at 645.908 kb on + strand at 645.908 kb on + strand at 645.908 kb on + strand at 645.908 kb on + strand at 645.909 kb on - strand at 645.909 kb on - strand at 645.909 kb on - strand at 645.909 kb on - strand at 645.909 kb on - strand at 645.909 kb on - strand at 645.909 kb on - strand at 645.909 kb on - strand at 645.909 kb on - strand at 645.909 kb on - strand at 645.909 kb on - strand at 645.917 kb on + strand at 645.918 kb on - strand at 645.935 kb on + strand at 645.935 kb on + strand at 645.936 kb on - strand at 645.936 kb on - strand at 645.936 kb on - strand at 645.954 kb on + strand at 645.954 kb on + strand at 645.955 kb on - strand at 646.087 kb on - strand at 646.087 kb on - strand at 646.089 kb on + strand at 646.089 kb on + strand at 646.089 kb on + strand at 646.089 kb on + strand at 646.090 kb on - strand at 646.090 kb on - strand at 646.090 kb on - strand at 646.152 kb on + strand, within ABZR87_RS03075 at 646.152 kb on + strand, within ABZR87_RS03075 at 646.153 kb on - strand, within ABZR87_RS03075 at 646.153 kb on - strand, within ABZR87_RS03075 at 646.236 kb on + strand, within ABZR87_RS03075 at 646.236 kb on + strand, within ABZR87_RS03075 at 646.236 kb on + strand, within ABZR87_RS03075 at 646.236 kb on + strand, within ABZR87_RS03075 at 646.237 kb on - strand, within ABZR87_RS03075 at 646.237 kb on - strand, within ABZR87_RS03075 at 646.237 kb on - strand, within ABZR87_RS03075 at 646.238 kb on + strand, within ABZR87_RS03075 at 646.238 kb on + strand, within ABZR87_RS03075 at 646.238 kb on + strand, within ABZR87_RS03075 at 646.238 kb on + strand, within ABZR87_RS03075 at 646.238 kb on + strand, within ABZR87_RS03075 at 646.238 kb on + strand, within ABZR87_RS03075 at 646.238 kb on + strand, within ABZR87_RS03075 at 646.238 kb on + strand, within ABZR87_RS03075 at 646.239 kb on - strand, within ABZR87_RS03075 at 646.239 kb on - strand, within ABZR87_RS03075 at 646.239 kb on - strand, within ABZR87_RS03075 at 646.239 kb on - strand, within ABZR87_RS03075 at 646.407 kb on + strand, within ABZR87_RS03075 at 646.407 kb on + strand, within ABZR87_RS03075 at 646.408 kb on - strand, within ABZR87_RS03075 at 646.624 kb on - strand, within ABZR87_RS03075 at 646.624 kb on - strand, within ABZR87_RS03075 at 646.624 kb on - strand, within ABZR87_RS03075 at 646.624 kb on - strand, within ABZR87_RS03075 at 646.716 kb on - strand, within ABZR87_RS03075 at 646.805 kb on - strand, within ABZR87_RS03075 at 646.815 kb on + strand, within ABZR87_RS03075 at 646.815 kb on + strand, within ABZR87_RS03075 at 646.816 kb on - strand, within ABZR87_RS03075 at 646.816 kb on - strand, within ABZR87_RS03075 at 646.816 kb on - strand, within ABZR87_RS03075 at 646.816 kb on - strand, within ABZR87_RS03075 at 646.816 kb on - strand, within ABZR87_RS03075 at 646.816 kb on - strand, within ABZR87_RS03075 at 646.844 kb on + strand, within ABZR87_RS03075 at 646.845 kb on - strand, within ABZR87_RS03075 at 647.166 kb on + strand at 647.166 kb on + strand at 647.166 kb on + strand at 647.167 kb on - strand at 647.185 kb on - strand at 647.228 kb on + strand at 647.228 kb on + strand at 647.229 kb on - strand at 647.229 kb on - strand at 647.260 kb on + strand at 647.260 kb on + strand at 647.260 kb on + strand at 647.260 kb on + strand at 647.260 kb on + strand at 647.260 kb on + strand at 647.260 kb on + strand at 647.261 kb on - strand at 647.261 kb on - strand at 647.261 kb on - strand at 647.261 kb on - strand at 647.261 kb on - strand at 647.261 kb on - strand at 647.261 kb on - strand at 647.261 kb on - strand at 647.261 kb on - strand at 647.261 kb on - strand at 647.261 kb on - strand at 647.330 kb on + strand at 647.330 kb on + strand at 647.330 kb on + strand at 647.330 kb on + strand at 647.330 kb on + strand at 647.330 kb on + strand at 647.331 kb on - strand at 647.331 kb on - strand at 647.331 kb on - strand at 647.331 kb on - strand at 647.345 kb on + strand at 647.345 kb on + strand at 647.345 kb on + strand at 647.345 kb on + strand at 647.346 kb on - strand at 647.346 kb on - strand at 647.346 kb on - strand at 647.346 kb on - strand at 647.346 kb on - strand at 647.354 kb on + strand at 647.354 kb on + strand at 647.354 kb on + strand at 647.355 kb on - strand at 647.355 kb on - strand at 647.355 kb on - strand at 647.355 kb on - strand at 647.355 kb on - strand at 647.355 kb on - strand at 647.355 kb on - strand at 647.480 kb on + strand, within ABZR87_RS03080 at 647.480 kb on + strand, within ABZR87_RS03080 at 647.481 kb on - strand, within ABZR87_RS03080 at 647.481 kb on - strand, within ABZR87_RS03080 at 647.481 kb on - strand, within ABZR87_RS03080 at 647.571 kb on - strand, within ABZR87_RS03080 at 647.571 kb on - strand, within ABZR87_RS03080 at 647.666 kb on + strand, within ABZR87_RS03080 at 647.667 kb on - strand, within ABZR87_RS03080 at 647.777 kb on + strand, within ABZR87_RS03080 at 647.777 kb on + strand, within ABZR87_RS03080 at 647.777 kb on + strand, within ABZR87_RS03080 at 647.777 kb on + strand, within ABZR87_RS03080 at 647.778 kb on - strand, within ABZR87_RS03080 at 647.778 kb on - strand, within ABZR87_RS03080 at 648.008 kb on + strand, within ABZR87_RS03080 at 648.008 kb on + strand, within ABZR87_RS03080 at 648.008 kb on + strand, within ABZR87_RS03080 at 648.008 kb on + strand, within ABZR87_RS03080 at 648.024 kb on - strand, within ABZR87_RS03080 at 648.024 kb on - strand, within ABZR87_RS03080 at 648.176 kb on - strand, within ABZR87_RS03080 at 648.176 kb on - strand, within ABZR87_RS03080 at 648.200 kb on + strand, within ABZR87_RS03080
Per-strain Table
Position Strand Gene LocusTag Fraction Ra3_0.01 remove 645,029 - ABZR87_RS03070 0.57 +0.0 645,064 + ABZR87_RS03070 0.60 +0.5 645,064 + ABZR87_RS03070 0.60 -0.2 645,065 - ABZR87_RS03070 0.60 +0.3 645,077 + ABZR87_RS03070 0.60 -1.0 645,077 + ABZR87_RS03070 0.60 +0.7 645,077 + ABZR87_RS03070 0.60 -0.2 645,077 + ABZR87_RS03070 0.60 -0.2 645,078 - ABZR87_RS03070 0.60 +0.9 645,078 - ABZR87_RS03070 0.60 +0.9 645,184 + ABZR87_RS03070 0.67 +0.3 645,214 + ABZR87_RS03070 0.69 -0.0 645,215 - ABZR87_RS03070 0.69 +0.8 645,215 - ABZR87_RS03070 0.69 -0.2 645,331 + ABZR87_RS03070 0.76 -0.4 645,352 + ABZR87_RS03070 0.77 +0.3 645,352 + ABZR87_RS03070 0.77 +0.6 645,352 + ABZR87_RS03070 0.77 +0.0 645,353 - ABZR87_RS03070 0.77 +0.3 645,353 - ABZR87_RS03070 0.77 +0.6 645,353 - ABZR87_RS03070 0.77 +0.4 645,353 - ABZR87_RS03070 0.77 +0.2 645,353 - ABZR87_RS03070 0.77 +0.3 645,353 - ABZR87_RS03070 0.77 +1.2 645,353 - ABZR87_RS03070 0.77 -1.1 645,499 + ABZR87_RS03070 0.86 +0.2 645,500 - ABZR87_RS03070 0.87 -0.3 645,500 - ABZR87_RS03070 0.87 -0.1 645,500 - ABZR87_RS03070 0.87 -1.1 645,500 - ABZR87_RS03070 0.87 +1.1 645,897 + -0.1 645,897 + -0.6 645,897 + +0.5 645,897 + +0.5 645,897 + -0.8 645,897 + +0.2 645,898 - -0.8 645,898 - -0.2 645,898 - +0.1 645,898 - +2.4 645,898 - -1.1 645,898 - +0.2 645,904 + +0.3 645,904 + +0.1 645,904 + -0.3 645,904 + -0.1 645,904 + +0.4 645,904 + +0.3 645,904 + +0.4 645,904 + +0.3 645,904 + +0.5 645,904 + -0.2 645,904 + +0.4 645,904 + +0.1 645,904 + +0.1 645,904 + -0.7 645,905 - +0.6 645,905 - -0.3 645,905 - +0.9 645,905 - -0.1 645,905 - -0.0 645,905 - +0.7 645,905 - -0.4 645,905 - +0.1 645,905 - +1.1 645,905 - +0.4 645,905 - +0.3 645,905 - -1.2 645,908 + -0.0 645,908 + +1.3 645,908 + -0.7 645,908 + +0.1 645,908 + -0.8 645,908 + -0.1 645,908 + +1.2 645,908 + -0.4 645,908 + +0.2 645,908 + -0.2 645,908 + +1.7 645,908 + -0.1 645,909 - +0.7 645,909 - -0.2 645,909 - +2.1 645,909 - -0.6 645,909 - -0.5 645,909 - -1.5 645,909 - +0.3 645,909 - +0.2 645,909 - -0.3 645,909 - -0.6 645,909 - +0.2 645,917 + +0.2 645,918 - -1.0 645,935 + -0.6 645,935 + +0.3 645,936 - -1.5 645,936 - -0.6 645,936 - -0.9 645,954 + -0.1 645,954 + -1.6 645,955 - -0.2 646,087 - -0.1 646,087 - +0.0 646,089 + -0.6 646,089 + -0.3 646,089 + +2.0 646,089 + -0.0 646,090 - +0.1 646,090 - -2.0 646,090 - -1.1 646,152 + ABZR87_RS03075 0.13 +2.5 646,152 + ABZR87_RS03075 0.13 +0.4 646,153 - ABZR87_RS03075 0.13 -1.3 646,153 - ABZR87_RS03075 0.13 -0.5 646,236 + ABZR87_RS03075 0.19 -1.0 646,236 + ABZR87_RS03075 0.19 +0.1 646,236 + ABZR87_RS03075 0.19 -0.9 646,236 + ABZR87_RS03075 0.19 -0.8 646,237 - ABZR87_RS03075 0.19 -0.6 646,237 - ABZR87_RS03075 0.19 -1.1 646,237 - ABZR87_RS03075 0.19 -0.1 646,238 + ABZR87_RS03075 0.20 -1.2 646,238 + ABZR87_RS03075 0.20 +0.7 646,238 + ABZR87_RS03075 0.20 -2.2 646,238 + ABZR87_RS03075 0.20 +0.7 646,238 + ABZR87_RS03075 0.20 +1.4 646,238 + ABZR87_RS03075 0.20 -1.6 646,238 + ABZR87_RS03075 0.20 +0.2 646,238 + ABZR87_RS03075 0.20 -0.9 646,239 - ABZR87_RS03075 0.20 -0.4 646,239 - ABZR87_RS03075 0.20 -1.0 646,239 - ABZR87_RS03075 0.20 -0.7 646,239 - ABZR87_RS03075 0.20 +0.7 646,407 + ABZR87_RS03075 0.33 +0.4 646,407 + ABZR87_RS03075 0.33 -1.3 646,408 - ABZR87_RS03075 0.33 -0.3 646,624 - ABZR87_RS03075 0.50 +0.4 646,624 - ABZR87_RS03075 0.50 -1.5 646,624 - ABZR87_RS03075 0.50 +0.7 646,624 - ABZR87_RS03075 0.50 +0.7 646,716 - ABZR87_RS03075 0.58 -0.8 646,805 - ABZR87_RS03075 0.65 +3.3 646,815 + ABZR87_RS03075 0.66 -0.0 646,815 + ABZR87_RS03075 0.66 -0.5 646,816 - ABZR87_RS03075 0.66 -0.6 646,816 - ABZR87_RS03075 0.66 +0.5 646,816 - ABZR87_RS03075 0.66 -0.6 646,816 - ABZR87_RS03075 0.66 -1.1 646,816 - ABZR87_RS03075 0.66 -0.3 646,816 - ABZR87_RS03075 0.66 -0.9 646,844 + ABZR87_RS03075 0.68 -1.3 646,845 - ABZR87_RS03075 0.68 +1.2 647,166 + -0.1 647,166 + +0.4 647,166 + -1.3 647,167 - -2.3 647,185 - +0.4 647,228 + -0.5 647,228 + +0.8 647,229 - +0.5 647,229 - -1.1 647,260 + +0.4 647,260 + -0.0 647,260 + +0.4 647,260 + -0.9 647,260 + -0.3 647,260 + -0.1 647,260 + -0.8 647,261 - -0.1 647,261 - +0.0 647,261 - -0.3 647,261 - +0.0 647,261 - +0.0 647,261 - -0.8 647,261 - +0.0 647,261 - -0.1 647,261 - +0.6 647,261 - +0.9 647,261 - +1.4 647,330 + +0.3 647,330 + -1.3 647,330 + +0.7 647,330 + -0.4 647,330 + +0.1 647,330 + -0.3 647,331 - -1.0 647,331 - -1.4 647,331 - -0.1 647,331 - +0.4 647,345 + +0.4 647,345 + -1.3 647,345 + +0.4 647,345 + -0.1 647,346 - -0.6 647,346 - -0.2 647,346 - -0.3 647,346 - +0.7 647,346 - +0.1 647,354 + -0.7 647,354 + -0.7 647,354 + +0.6 647,355 - +0.1 647,355 - -0.4 647,355 - +0.0 647,355 - -1.2 647,355 - +0.2 647,355 - -0.7 647,355 - +0.7 647,480 + ABZR87_RS03080 0.17 -0.7 647,480 + ABZR87_RS03080 0.17 -0.7 647,481 - ABZR87_RS03080 0.17 +0.0 647,481 - ABZR87_RS03080 0.17 +0.0 647,481 - ABZR87_RS03080 0.17 +0.5 647,571 - ABZR87_RS03080 0.24 +0.6 647,571 - ABZR87_RS03080 0.24 +1.7 647,666 + ABZR87_RS03080 0.32 +0.1 647,667 - ABZR87_RS03080 0.32 -0.1 647,777 + ABZR87_RS03080 0.40 -0.0 647,777 + ABZR87_RS03080 0.40 -0.8 647,777 + ABZR87_RS03080 0.40 +0.9 647,777 + ABZR87_RS03080 0.40 +0.5 647,778 - ABZR87_RS03080 0.40 -0.4 647,778 - ABZR87_RS03080 0.40 +0.4 648,008 + ABZR87_RS03080 0.58 +0.9 648,008 + ABZR87_RS03080 0.58 -0.2 648,008 + ABZR87_RS03080 0.58 +0.8 648,008 + ABZR87_RS03080 0.58 +0.8 648,024 - ABZR87_RS03080 0.59 +0.3 648,024 - ABZR87_RS03080 0.59 -0.9 648,176 - ABZR87_RS03080 0.71 -0.2 648,176 - ABZR87_RS03080 0.71 +1.4 648,200 + ABZR87_RS03080 0.73 -0.7
Or see this region's nucleotide sequence