Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS03335

Experiment: Ra3_0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS03325 and ABZR87_RS03330 are separated by 30 nucleotidesABZR87_RS03330 and ABZR87_RS03335 are separated by 102 nucleotidesABZR87_RS03335 and ABZR87_RS03340 are separated by 12 nucleotidesABZR87_RS03340 and ABZR87_RS03345 are separated by 125 nucleotides ABZR87_RS03325: ABZR87_RS03325 - GNAT family N-acetyltransferase, at 702,022 to 702,717 _RS03325 ABZR87_RS03330: ABZR87_RS03330 - MarR family transcriptional regulator, at 702,748 to 703,215 _RS03330 ABZR87_RS03335: ABZR87_RS03335 - hypothetical protein, at 703,318 to 703,671 _RS03335 ABZR87_RS03340: ABZR87_RS03340 - VOC family protein, at 703,684 to 704,076 _RS03340 ABZR87_RS03345: ABZR87_RS03345 - cupin domain-containing protein, at 704,202 to 704,693 _RS03345 Position (kb) 703 704Strain fitness (log2 ratio) -1 0 1 2at 702.326 kb on - strand, within ABZR87_RS03325at 702.326 kb on - strand, within ABZR87_RS03325at 702.463 kb on + strand, within ABZR87_RS03325at 702.463 kb on + strand, within ABZR87_RS03325at 702.463 kb on + strand, within ABZR87_RS03325at 702.463 kb on + strand, within ABZR87_RS03325at 702.463 kb on + strand, within ABZR87_RS03325at 702.463 kb on + strand, within ABZR87_RS03325at 702.463 kb on + strand, within ABZR87_RS03325at 702.463 kb on + strand, within ABZR87_RS03325at 702.464 kb on - strand, within ABZR87_RS03325at 702.464 kb on - strand, within ABZR87_RS03325at 702.464 kb on - strand, within ABZR87_RS03325at 702.464 kb on - strand, within ABZR87_RS03325at 702.464 kb on - strand, within ABZR87_RS03325at 702.532 kb on + strand, within ABZR87_RS03325at 702.533 kb on - strand, within ABZR87_RS03325at 702.533 kb on - strand, within ABZR87_RS03325at 702.533 kb on - strand, within ABZR87_RS03325at 702.533 kb on - strand, within ABZR87_RS03325at 702.533 kb on - strand, within ABZR87_RS03325at 702.538 kb on + strand, within ABZR87_RS03325at 702.556 kb on + strand, within ABZR87_RS03325at 702.556 kb on + strand, within ABZR87_RS03325at 702.631 kb on + strand, within ABZR87_RS03325at 702.631 kb on + strand, within ABZR87_RS03325at 702.631 kb on + strand, within ABZR87_RS03325at 702.631 kb on + strand, within ABZR87_RS03325at 702.631 kb on + strand, within ABZR87_RS03325at 702.632 kb on - strand, within ABZR87_RS03325at 702.632 kb on - strand, within ABZR87_RS03325at 702.632 kb on - strand, within ABZR87_RS03325at 702.632 kb on - strand, within ABZR87_RS03325at 702.632 kb on - strand, within ABZR87_RS03325at 702.632 kb on - strand, within ABZR87_RS03325at 702.632 kb on - strand, within ABZR87_RS03325at 702.632 kb on - strand, within ABZR87_RS03325at 702.632 kb on - strand, within ABZR87_RS03325at 702.632 kb on - strand, within ABZR87_RS03325at 702.632 kb on - strand, within ABZR87_RS03325at 702.632 kb on - strand, within ABZR87_RS03325at 702.715 kb on + strandat 702.716 kb on - strandat 702.716 kb on - strandat 702.716 kb on - strandat 702.716 kb on - strandat 702.716 kb on - strandat 702.716 kb on - strandat 702.762 kb on + strandat 702.762 kb on + strandat 702.762 kb on + strandat 702.763 kb on - strandat 702.763 kb on - strandat 702.763 kb on - strandat 702.763 kb on - strandat 702.763 kb on - strandat 702.763 kb on - strandat 702.763 kb on - strandat 702.976 kb on + strand, within ABZR87_RS03330at 702.976 kb on + strand, within ABZR87_RS03330at 702.977 kb on - strand, within ABZR87_RS03330at 702.977 kb on - strand, within ABZR87_RS03330at 702.977 kb on - strand, within ABZR87_RS03330at 702.977 kb on - strand, within ABZR87_RS03330at 702.977 kb on - strand, within ABZR87_RS03330at 703.038 kb on + strand, within ABZR87_RS03330at 703.039 kb on - strand, within ABZR87_RS03330at 703.060 kb on - strand, within ABZR87_RS03330at 703.224 kb on - strandat 703.228 kb on + strandat 703.258 kb on - strandat 703.568 kb on + strand, within ABZR87_RS03335at 703.568 kb on + strand, within ABZR87_RS03335at 703.569 kb on - strand, within ABZR87_RS03335at 703.569 kb on - strand, within ABZR87_RS03335at 703.569 kb on - strand, within ABZR87_RS03335at 703.660 kb on + strandat 703.660 kb on + strandat 703.660 kb on + strandat 703.660 kb on + strandat 703.661 kb on - strandat 703.744 kb on + strand, within ABZR87_RS03340at 703.744 kb on + strand, within ABZR87_RS03340at 703.744 kb on + strand, within ABZR87_RS03340at 703.744 kb on + strand, within ABZR87_RS03340at 703.744 kb on + strand, within ABZR87_RS03340at 703.744 kb on + strand, within ABZR87_RS03340at 703.744 kb on + strand, within ABZR87_RS03340at 703.744 kb on + strand, within ABZR87_RS03340at 703.744 kb on + strand, within ABZR87_RS03340at 703.744 kb on + strand, within ABZR87_RS03340at 703.744 kb on + strand, within ABZR87_RS03340at 703.744 kb on + strand, within ABZR87_RS03340at 703.744 kb on + strand, within ABZR87_RS03340at 703.744 kb on + strand, within ABZR87_RS03340at 703.744 kb on + strand, within ABZR87_RS03340at 703.745 kb on - strand, within ABZR87_RS03340at 703.745 kb on - strand, within ABZR87_RS03340at 703.745 kb on - strand, within ABZR87_RS03340at 703.745 kb on - strand, within ABZR87_RS03340at 703.745 kb on - strand, within ABZR87_RS03340at 703.745 kb on - strand, within ABZR87_RS03340at 703.745 kb on - strand, within ABZR87_RS03340at 703.745 kb on - strand, within ABZR87_RS03340at 703.745 kb on - strand, within ABZR87_RS03340at 703.745 kb on - strand, within ABZR87_RS03340at 703.745 kb on - strand, within ABZR87_RS03340at 703.745 kb on - strand, within ABZR87_RS03340at 703.745 kb on - strand, within ABZR87_RS03340at 703.747 kb on - strand, within ABZR87_RS03340at 703.747 kb on - strand, within ABZR87_RS03340at 703.747 kb on - strand, within ABZR87_RS03340at 704.008 kb on + strand, within ABZR87_RS03340at 704.008 kb on + strand, within ABZR87_RS03340at 704.008 kb on + strand, within ABZR87_RS03340at 704.009 kb on - strand, within ABZR87_RS03340at 704.115 kb on + strandat 704.115 kb on + strandat 704.115 kb on + strandat 704.115 kb on + strandat 704.116 kb on - strandat 704.116 kb on - strandat 704.116 kb on - strandat 704.382 kb on + strand, within ABZR87_RS03345at 704.382 kb on + strand, within ABZR87_RS03345at 704.383 kb on - strand, within ABZR87_RS03345at 704.383 kb on - strand, within ABZR87_RS03345at 704.409 kb on + strand, within ABZR87_RS03345at 704.409 kb on + strand, within ABZR87_RS03345at 704.409 kb on + strand, within ABZR87_RS03345at 704.409 kb on + strand, within ABZR87_RS03345at 704.409 kb on + strand, within ABZR87_RS03345at 704.409 kb on + strand, within ABZR87_RS03345at 704.409 kb on + strand, within ABZR87_RS03345at 704.409 kb on + strand, within ABZR87_RS03345at 704.410 kb on - strand, within ABZR87_RS03345at 704.410 kb on - strand, within ABZR87_RS03345at 704.410 kb on - strand, within ABZR87_RS03345at 704.410 kb on - strand, within ABZR87_RS03345at 704.410 kb on - strand, within ABZR87_RS03345at 704.410 kb on - strand, within ABZR87_RS03345at 704.410 kb on - strand, within ABZR87_RS03345at 704.410 kb on - strand, within ABZR87_RS03345at 704.410 kb on - strand, within ABZR87_RS03345at 704.410 kb on - strand, within ABZR87_RS03345at 704.410 kb on - strand, within ABZR87_RS03345at 704.410 kb on - strand, within ABZR87_RS03345at 704.410 kb on - strand, within ABZR87_RS03345at 704.439 kb on + strand, within ABZR87_RS03345at 704.440 kb on - strand, within ABZR87_RS03345at 704.440 kb on - strand, within ABZR87_RS03345at 704.502 kb on + strand, within ABZR87_RS03345at 704.502 kb on + strand, within ABZR87_RS03345at 704.502 kb on + strand, within ABZR87_RS03345at 704.502 kb on + strand, within ABZR87_RS03345at 704.502 kb on + strand, within ABZR87_RS03345at 704.502 kb on + strand, within ABZR87_RS03345at 704.502 kb on + strand, within ABZR87_RS03345at 704.502 kb on + strand, within ABZR87_RS03345at 704.502 kb on + strand, within ABZR87_RS03345at 704.503 kb on - strand, within ABZR87_RS03345at 704.503 kb on - strand, within ABZR87_RS03345at 704.503 kb on - strand, within ABZR87_RS03345at 704.503 kb on - strand, within ABZR87_RS03345at 704.503 kb on - strand, within ABZR87_RS03345at 704.503 kb on - strand, within ABZR87_RS03345at 704.592 kb on + strand, within ABZR87_RS03345at 704.592 kb on + strand, within ABZR87_RS03345at 704.592 kb on + strand, within ABZR87_RS03345at 704.592 kb on + strand, within ABZR87_RS03345at 704.592 kb on + strand, within ABZR87_RS03345at 704.592 kb on + strand, within ABZR87_RS03345at 704.593 kb on - strand, within ABZR87_RS03345at 704.593 kb on - strand, within ABZR87_RS03345at 704.593 kb on - strand, within ABZR87_RS03345at 704.655 kb on + strandat 704.655 kb on + strandat 704.655 kb on + strandat 704.655 kb on + strandat 704.656 kb on - strandat 704.656 kb on - strandat 704.656 kb on - strandat 704.656 kb on - strandat 704.656 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ra3_0.1
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702,326 - ABZR87_RS03325 0.44 -0.9
702,326 - ABZR87_RS03325 0.44 +1.0
702,463 + ABZR87_RS03325 0.63 +0.3
702,463 + ABZR87_RS03325 0.63 -0.6
702,463 + ABZR87_RS03325 0.63 +1.5
702,463 + ABZR87_RS03325 0.63 -0.3
702,463 + ABZR87_RS03325 0.63 -0.2
702,463 + ABZR87_RS03325 0.63 -0.5
702,463 + ABZR87_RS03325 0.63 -0.1
702,463 + ABZR87_RS03325 0.63 +0.7
702,464 - ABZR87_RS03325 0.64 -0.0
702,464 - ABZR87_RS03325 0.64 +0.2
702,464 - ABZR87_RS03325 0.64 +0.4
702,464 - ABZR87_RS03325 0.64 -0.5
702,464 - ABZR87_RS03325 0.64 -1.5
702,532 + ABZR87_RS03325 0.73 -0.7
702,533 - ABZR87_RS03325 0.73 -0.4
702,533 - ABZR87_RS03325 0.73 +0.2
702,533 - ABZR87_RS03325 0.73 -0.2
702,533 - ABZR87_RS03325 0.73 +0.3
702,533 - ABZR87_RS03325 0.73 -0.5
702,538 + ABZR87_RS03325 0.74 +0.5
702,556 + ABZR87_RS03325 0.77 +0.1
702,556 + ABZR87_RS03325 0.77 -0.8
702,631 + ABZR87_RS03325 0.88 -0.3
702,631 + ABZR87_RS03325 0.88 +0.3
702,631 + ABZR87_RS03325 0.88 -0.7
702,631 + ABZR87_RS03325 0.88 +0.2
702,631 + ABZR87_RS03325 0.88 +0.1
702,632 - ABZR87_RS03325 0.88 -0.4
702,632 - ABZR87_RS03325 0.88 +0.5
702,632 - ABZR87_RS03325 0.88 -0.2
702,632 - ABZR87_RS03325 0.88 +0.2
702,632 - ABZR87_RS03325 0.88 -0.4
702,632 - ABZR87_RS03325 0.88 +0.8
702,632 - ABZR87_RS03325 0.88 -0.2
702,632 - ABZR87_RS03325 0.88 -0.4
702,632 - ABZR87_RS03325 0.88 +0.7
702,632 - ABZR87_RS03325 0.88 -0.3
702,632 - ABZR87_RS03325 0.88 -0.5
702,632 - ABZR87_RS03325 0.88 +0.7
702,715 + +0.6
702,716 - +0.3
702,716 - +0.6
702,716 - -0.9
702,716 - -0.0
702,716 - -0.3
702,716 - -0.4
702,762 + -0.7
702,762 + -0.5
702,762 + -0.4
702,763 - -0.0
702,763 - +0.3
702,763 - -0.6
702,763 - +0.1
702,763 - -0.2
702,763 - -0.4
702,763 - +0.5
702,976 + ABZR87_RS03330 0.49 -0.5
702,976 + ABZR87_RS03330 0.49 -1.1
702,977 - ABZR87_RS03330 0.49 +0.1
702,977 - ABZR87_RS03330 0.49 +0.2
702,977 - ABZR87_RS03330 0.49 -0.8
702,977 - ABZR87_RS03330 0.49 -0.3
702,977 - ABZR87_RS03330 0.49 -0.1
703,038 + ABZR87_RS03330 0.62 -0.4
703,039 - ABZR87_RS03330 0.62 -1.7
703,060 - ABZR87_RS03330 0.67 +0.2
703,224 - -0.0
703,228 + +1.2
703,258 - -0.7
703,568 + ABZR87_RS03335 0.71 -0.7
703,568 + ABZR87_RS03335 0.71 -0.8
703,569 - ABZR87_RS03335 0.71 -0.4
703,569 - ABZR87_RS03335 0.71 -0.2
703,569 - ABZR87_RS03335 0.71 -0.7
703,660 + -1.2
703,660 + +0.0
703,660 + -0.4
703,660 + +0.1
703,661 - -0.1
703,744 + ABZR87_RS03340 0.15 -0.2
703,744 + ABZR87_RS03340 0.15 -0.9
703,744 + ABZR87_RS03340 0.15 -0.4
703,744 + ABZR87_RS03340 0.15 +0.6
703,744 + ABZR87_RS03340 0.15 +1.4
703,744 + ABZR87_RS03340 0.15 +0.9
703,744 + ABZR87_RS03340 0.15 -0.5
703,744 + ABZR87_RS03340 0.15 -0.4
703,744 + ABZR87_RS03340 0.15 -0.0
703,744 + ABZR87_RS03340 0.15 -0.2
703,744 + ABZR87_RS03340 0.15 -0.5
703,744 + ABZR87_RS03340 0.15 +0.6
703,744 + ABZR87_RS03340 0.15 +0.1
703,744 + ABZR87_RS03340 0.15 -0.2
703,744 + ABZR87_RS03340 0.15 +0.6
703,745 - ABZR87_RS03340 0.16 -0.1
703,745 - ABZR87_RS03340 0.16 +0.8
703,745 - ABZR87_RS03340 0.16 -0.1
703,745 - ABZR87_RS03340 0.16 -0.8
703,745 - ABZR87_RS03340 0.16 +0.4
703,745 - ABZR87_RS03340 0.16 +0.1
703,745 - ABZR87_RS03340 0.16 +0.8
703,745 - ABZR87_RS03340 0.16 -0.2
703,745 - ABZR87_RS03340 0.16 +0.6
703,745 - ABZR87_RS03340 0.16 -1.2
703,745 - ABZR87_RS03340 0.16 -0.5
703,745 - ABZR87_RS03340 0.16 +0.1
703,745 - ABZR87_RS03340 0.16 +0.4
703,747 - ABZR87_RS03340 0.16 +0.4
703,747 - ABZR87_RS03340 0.16 -0.5
703,747 - ABZR87_RS03340 0.16 -0.7
704,008 + ABZR87_RS03340 0.82 +0.2
704,008 + ABZR87_RS03340 0.82 -0.4
704,008 + ABZR87_RS03340 0.82 -1.1
704,009 - ABZR87_RS03340 0.83 -0.7
704,115 + +0.3
704,115 + -0.2
704,115 + -0.1
704,115 + +0.4
704,116 - +0.5
704,116 - +0.1
704,116 - -0.5
704,382 + ABZR87_RS03345 0.37 +0.5
704,382 + ABZR87_RS03345 0.37 -0.6
704,383 - ABZR87_RS03345 0.37 +0.4
704,383 - ABZR87_RS03345 0.37 -0.4
704,409 + ABZR87_RS03345 0.42 +0.3
704,409 + ABZR87_RS03345 0.42 -0.4
704,409 + ABZR87_RS03345 0.42 +0.9
704,409 + ABZR87_RS03345 0.42 +1.0
704,409 + ABZR87_RS03345 0.42 -1.2
704,409 + ABZR87_RS03345 0.42 +1.1
704,409 + ABZR87_RS03345 0.42 +0.4
704,409 + ABZR87_RS03345 0.42 -1.0
704,410 - ABZR87_RS03345 0.42 -0.2
704,410 - ABZR87_RS03345 0.42 -0.2
704,410 - ABZR87_RS03345 0.42 +0.9
704,410 - ABZR87_RS03345 0.42 +0.0
704,410 - ABZR87_RS03345 0.42 -0.8
704,410 - ABZR87_RS03345 0.42 -0.9
704,410 - ABZR87_RS03345 0.42 -0.0
704,410 - ABZR87_RS03345 0.42 -0.0
704,410 - ABZR87_RS03345 0.42 -0.2
704,410 - ABZR87_RS03345 0.42 +0.3
704,410 - ABZR87_RS03345 0.42 +1.2
704,410 - ABZR87_RS03345 0.42 -0.4
704,410 - ABZR87_RS03345 0.42 +0.5
704,439 + ABZR87_RS03345 0.48 -0.2
704,440 - ABZR87_RS03345 0.48 -0.1
704,440 - ABZR87_RS03345 0.48 +0.1
704,502 + ABZR87_RS03345 0.61 +0.3
704,502 + ABZR87_RS03345 0.61 -0.2
704,502 + ABZR87_RS03345 0.61 -1.4
704,502 + ABZR87_RS03345 0.61 -0.3
704,502 + ABZR87_RS03345 0.61 +0.1
704,502 + ABZR87_RS03345 0.61 -0.2
704,502 + ABZR87_RS03345 0.61 -0.2
704,502 + ABZR87_RS03345 0.61 +0.2
704,502 + ABZR87_RS03345 0.61 -0.2
704,503 - ABZR87_RS03345 0.61 +1.4
704,503 - ABZR87_RS03345 0.61 +2.4
704,503 - ABZR87_RS03345 0.61 -0.5
704,503 - ABZR87_RS03345 0.61 +0.3
704,503 - ABZR87_RS03345 0.61 -0.6
704,503 - ABZR87_RS03345 0.61 -0.5
704,592 + ABZR87_RS03345 0.79 +0.1
704,592 + ABZR87_RS03345 0.79 -0.5
704,592 + ABZR87_RS03345 0.79 +0.3
704,592 + ABZR87_RS03345 0.79 +1.8
704,592 + ABZR87_RS03345 0.79 +0.2
704,592 + ABZR87_RS03345 0.79 +1.1
704,593 - ABZR87_RS03345 0.79 -1.7
704,593 - ABZR87_RS03345 0.79 -1.4
704,593 - ABZR87_RS03345 0.79 -0.2
704,655 + +0.8
704,655 + +0.6
704,655 + +0.1
704,655 + +0.5
704,656 - +0.5
704,656 - +0.3
704,656 - +0.7
704,656 - +0.4
704,656 - +0.4

Or see this region's nucleotide sequence