Experiment: Ra3_0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS00715 and ABZR87_RS00720 are separated by 28 nucleotides ABZR87_RS00720 and ABZR87_RS00725 are separated by 27 nucleotides
ABZR87_RS00715: ABZR87_RS00715 - MotA/TolQ/ExbB proton channel family protein, at 145,974 to 146,594
_RS00715
ABZR87_RS00720: ABZR87_RS00720 - biopolymer transporter ExbD, at 146,623 to 147,051
_RS00720
ABZR87_RS00725: ABZR87_RS00725 - tetraacyldisaccharide 4'-kinase, at 147,079 to 148,128
_RS00725
Position (kb)
146
147
148 Strain fitness (log2 ratio)
-1
0
1
2 at 145.700 kb on - strand at 145.710 kb on + strand at 145.710 kb on + strand at 145.710 kb on + strand at 145.710 kb on + strand at 145.710 kb on + strand at 145.711 kb on - strand at 145.711 kb on - strand at 145.711 kb on - strand at 145.868 kb on - strand at 146.103 kb on + strand, within ABZR87_RS00715 at 146.103 kb on + strand, within ABZR87_RS00715 at 146.432 kb on + strand, within ABZR87_RS00715 at 146.448 kb on + strand, within ABZR87_RS00715 at 146.448 kb on + strand, within ABZR87_RS00715 at 146.502 kb on + strand, within ABZR87_RS00715 at 146.502 kb on + strand, within ABZR87_RS00715 at 146.526 kb on + strand, within ABZR87_RS00715 at 146.526 kb on + strand, within ABZR87_RS00715 at 146.526 kb on + strand, within ABZR87_RS00715 at 146.526 kb on + strand, within ABZR87_RS00715 at 146.526 kb on + strand, within ABZR87_RS00715 at 146.526 kb on + strand, within ABZR87_RS00715 at 146.526 kb on + strand, within ABZR87_RS00715 at 146.526 kb on + strand, within ABZR87_RS00715 at 146.526 kb on + strand, within ABZR87_RS00715 at 146.559 kb on + strand at 146.559 kb on + strand at 146.559 kb on + strand at 146.559 kb on + strand at 146.559 kb on + strand at 146.559 kb on + strand at 146.610 kb on - strand at 146.728 kb on + strand, within ABZR87_RS00720 at 146.728 kb on + strand, within ABZR87_RS00720 at 146.728 kb on + strand, within ABZR87_RS00720 at 146.728 kb on + strand, within ABZR87_RS00720 at 146.728 kb on + strand, within ABZR87_RS00720 at 146.728 kb on + strand, within ABZR87_RS00720 at 146.737 kb on + strand, within ABZR87_RS00720 at 146.737 kb on + strand, within ABZR87_RS00720 at 146.833 kb on + strand, within ABZR87_RS00720 at 146.833 kb on + strand, within ABZR87_RS00720 at 146.833 kb on + strand, within ABZR87_RS00720 at 146.833 kb on + strand, within ABZR87_RS00720 at 146.834 kb on - strand, within ABZR87_RS00720 at 146.834 kb on - strand, within ABZR87_RS00720 at 146.834 kb on - strand, within ABZR87_RS00720 at 147.049 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ra3_0.1 remove 145,700 - +0.6 145,710 + -0.2 145,710 + -0.1 145,710 + +0.1 145,710 + -0.1 145,710 + +0.7 145,711 - -0.7 145,711 - -0.1 145,711 - -0.1 145,868 - +1.0 146,103 + ABZR87_RS00715 0.21 +1.6 146,103 + ABZR87_RS00715 0.21 +1.1 146,432 + ABZR87_RS00715 0.74 +1.4 146,448 + ABZR87_RS00715 0.76 +0.4 146,448 + ABZR87_RS00715 0.76 +2.1 146,502 + ABZR87_RS00715 0.85 +1.6 146,502 + ABZR87_RS00715 0.85 +1.9 146,526 + ABZR87_RS00715 0.89 +1.9 146,526 + ABZR87_RS00715 0.89 +1.4 146,526 + ABZR87_RS00715 0.89 +2.0 146,526 + ABZR87_RS00715 0.89 +1.6 146,526 + ABZR87_RS00715 0.89 +2.3 146,526 + ABZR87_RS00715 0.89 +1.9 146,526 + ABZR87_RS00715 0.89 +1.5 146,526 + ABZR87_RS00715 0.89 +1.5 146,526 + ABZR87_RS00715 0.89 +1.6 146,559 + +1.1 146,559 + +1.7 146,559 + +1.4 146,559 + +1.9 146,559 + +1.8 146,559 + +1.9 146,610 - +0.0 146,728 + ABZR87_RS00720 0.24 +1.4 146,728 + ABZR87_RS00720 0.24 +2.0 146,728 + ABZR87_RS00720 0.24 +1.4 146,728 + ABZR87_RS00720 0.24 +1.2 146,728 + ABZR87_RS00720 0.24 +1.4 146,728 + ABZR87_RS00720 0.24 +0.8 146,737 + ABZR87_RS00720 0.27 +1.6 146,737 + ABZR87_RS00720 0.27 +1.1 146,833 + ABZR87_RS00720 0.49 +1.5 146,833 + ABZR87_RS00720 0.49 +1.2 146,833 + ABZR87_RS00720 0.49 +1.1 146,833 + ABZR87_RS00720 0.49 +1.8 146,834 - ABZR87_RS00720 0.49 +2.1 146,834 - ABZR87_RS00720 0.49 +1.2 146,834 - ABZR87_RS00720 0.49 +1.6 147,049 + +0.1
Or see this region's nucleotide sequence