Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU2780

Experiment: MoYLS4 with Polyethylene glycol 5%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU2779 and DVU2780 are separated by 141 nucleotidesDVU2780 and DVU2781 are separated by 393 nucleotides DVU2779: DVU2779 - extracellular solute-binding protein, putative (TIGR), at 2,884,963 to 2,886,348 DVU2779 DVU2780: DVU2780 - membrane protein, putative (TIGR), at 2,886,490 to 2,887,365 DVU2780 DVU2781: DVU2781 - hypothetical protein (TIGR), at 2,887,759 to 2,888,325 DVU2781 Position (kb) 2886 2887 2888Strain fitness (log2 ratio) -1 0 1 2at 2885.524 kb on - strand, within DVU2779at 2885.549 kb on - strand, within DVU2779at 2885.600 kb on - strand, within DVU2779at 2885.600 kb on - strand, within DVU2779at 2885.600 kb on - strand, within DVU2779at 2885.649 kb on - strand, within DVU2779at 2885.768 kb on - strand, within DVU2779at 2885.970 kb on + strand, within DVU2779at 2886.079 kb on - strand, within DVU2779at 2886.108 kb on + strand, within DVU2779at 2886.115 kb on + strand, within DVU2779at 2886.123 kb on - strand, within DVU2779at 2886.123 kb on - strand, within DVU2779at 2886.256 kb on - strandat 2886.344 kb on + strandat 2886.344 kb on + strandat 2886.386 kb on - strandat 2886.431 kb on - strandat 2886.454 kb on + strandat 2886.490 kb on + strandat 2886.536 kb on - strandat 2886.536 kb on - strandat 2886.600 kb on + strand, within DVU2780at 2886.601 kb on - strand, within DVU2780at 2886.607 kb on - strand, within DVU2780at 2886.611 kb on - strand, within DVU2780at 2886.682 kb on - strand, within DVU2780at 2886.726 kb on + strand, within DVU2780at 2886.746 kb on + strand, within DVU2780at 2886.754 kb on - strand, within DVU2780at 2886.794 kb on - strand, within DVU2780at 2886.862 kb on - strand, within DVU2780at 2886.871 kb on + strand, within DVU2780at 2886.914 kb on + strand, within DVU2780at 2887.024 kb on - strand, within DVU2780at 2887.024 kb on - strand, within DVU2780at 2887.024 kb on - strand, within DVU2780at 2887.024 kb on - strand, within DVU2780at 2887.048 kb on + strand, within DVU2780at 2887.261 kb on - strand, within DVU2780at 2887.261 kb on - strand, within DVU2780at 2887.287 kb on + strandat 2887.371 kb on - strandat 2887.430 kb on + strandat 2887.558 kb on - strandat 2887.757 kb on + strandat 2887.765 kb on - strandat 2887.787 kb on + strandat 2887.811 kb on + strandat 2887.863 kb on - strand, within DVU2781at 2887.883 kb on + strand, within DVU2781at 2887.894 kb on + strand, within DVU2781at 2887.965 kb on - strand, within DVU2781at 2887.970 kb on - strand, within DVU2781at 2887.993 kb on + strand, within DVU2781at 2887.998 kb on - strand, within DVU2781at 2887.998 kb on - strand, within DVU2781at 2888.086 kb on - strand, within DVU2781at 2888.092 kb on + strand, within DVU2781at 2888.167 kb on + strand, within DVU2781at 2888.203 kb on + strand, within DVU2781at 2888.362 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Polyethylene glycol 5%
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2,885,524 - DVU2779 0.40 -0.1
2,885,549 - DVU2779 0.42 -0.7
2,885,600 - DVU2779 0.46 -1.0
2,885,600 - DVU2779 0.46 +0.7
2,885,600 - DVU2779 0.46 -1.2
2,885,649 - DVU2779 0.49 -0.2
2,885,768 - DVU2779 0.58 -0.5
2,885,970 + DVU2779 0.73 -0.5
2,886,079 - DVU2779 0.81 +0.2
2,886,108 + DVU2779 0.83 -1.0
2,886,115 + DVU2779 0.83 +0.4
2,886,123 - DVU2779 0.84 -0.3
2,886,123 - DVU2779 0.84 +0.5
2,886,256 - -0.1
2,886,344 + +0.4
2,886,344 + +0.7
2,886,386 - -0.2
2,886,431 - -1.0
2,886,454 + -0.9
2,886,490 + -0.4
2,886,536 - +0.6
2,886,536 - -0.1
2,886,600 + DVU2780 0.13 +1.8
2,886,601 - DVU2780 0.13 +0.8
2,886,607 - DVU2780 0.13 +0.1
2,886,611 - DVU2780 0.14 -0.0
2,886,682 - DVU2780 0.22 -1.2
2,886,726 + DVU2780 0.27 +0.0
2,886,746 + DVU2780 0.29 +0.3
2,886,754 - DVU2780 0.30 +0.0
2,886,794 - DVU2780 0.35 +0.7
2,886,862 - DVU2780 0.42 -0.4
2,886,871 + DVU2780 0.43 +0.9
2,886,914 + DVU2780 0.48 +0.8
2,887,024 - DVU2780 0.61 -0.4
2,887,024 - DVU2780 0.61 -0.9
2,887,024 - DVU2780 0.61 +0.1
2,887,024 - DVU2780 0.61 +1.0
2,887,048 + DVU2780 0.64 -0.7
2,887,261 - DVU2780 0.88 -0.1
2,887,261 - DVU2780 0.88 +0.3
2,887,287 + -0.4
2,887,371 - -0.5
2,887,430 + +2.3
2,887,558 - -1.6
2,887,757 + +1.3
2,887,765 - -1.0
2,887,787 + +1.7
2,887,811 + +1.0
2,887,863 - DVU2781 0.18 -0.0
2,887,883 + DVU2781 0.22 +0.5
2,887,894 + DVU2781 0.24 -0.1
2,887,965 - DVU2781 0.36 -0.0
2,887,970 - DVU2781 0.37 -0.4
2,887,993 + DVU2781 0.41 +0.0
2,887,998 - DVU2781 0.42 -0.0
2,887,998 - DVU2781 0.42 -0.5
2,888,086 - DVU2781 0.58 -0.2
2,888,092 + DVU2781 0.59 -0.5
2,888,167 + DVU2781 0.72 +0.6
2,888,203 + DVU2781 0.78 -1.7
2,888,362 + -0.5

Or see this region's nucleotide sequence