Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DORF19110

Experiment: MoYLS4 with Polyethylene glycol 5%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU2590 and DVU2591 are separated by 145 nucleotidesDVU2591 and DVU2592 overlap by 8 nucleotidesDVU2592 and DORF19110 are separated by 2 nucleotidesDORF19110 and DORF19118 are separated by 115 nucleotidesDORF19118 and DVU2595 overlap by 4 nucleotides DVU2590: DVU2590 - sensory box protein (TIGR), at 2,713,242 to 2,714,807 DVU2590 DVU2591: DVU2591 - tail fiber assembly protein, putative (TIGR), at 2,714,953 to 2,715,462 DVU2591 DVU2592: DVU2592 - hypothetical protein (TIGR), at 2,715,455 to 2,715,793 DVU2592 DORF19110: DORF19110 - SEED: FIG00607238: hypothetical protein, at 2,715,796 to 2,716,848 DORF19110 DORF19118: DORF19118 - SEED: FIG00606735: hypothetical protein, at 2,716,964 to 2,717,386 DORF19118 DVU2595: DVU2595 - hypothetical protein (TIGR), at 2,717,383 to 2,717,958 DVU2595 Position (kb) 2715 2716 2717Strain fitness (log2 ratio) -1 0 1 2at 2714.849 kb on + strandat 2714.883 kb on - strandat 2714.958 kb on - strandat 2714.965 kb on + strandat 2714.986 kb on - strandat 2715.032 kb on - strand, within DVU2591at 2715.060 kb on + strand, within DVU2591at 2715.294 kb on + strand, within DVU2591at 2715.339 kb on - strand, within DVU2591at 2715.385 kb on - strand, within DVU2591at 2715.399 kb on + strand, within DVU2591at 2715.472 kb on + strandat 2715.724 kb on + strand, within DVU2592at 2715.731 kb on + strand, within DVU2592at 2715.731 kb on + strand, within DVU2592at 2715.731 kb on + strand, within DVU2592at 2715.731 kb on + strand, within DVU2592at 2715.848 kb on - strandat 2716.216 kb on - strand, within DORF19110at 2716.282 kb on + strand, within DORF19110at 2716.304 kb on + strand, within DORF19110at 2716.309 kb on + strand, within DORF19110at 2716.327 kb on - strand, within DORF19110at 2716.521 kb on + strand, within DORF19110at 2716.566 kb on + strand, within DORF19110at 2716.566 kb on + strand, within DORF19110at 2716.574 kb on - strand, within DORF19110at 2716.574 kb on - strand, within DORF19110at 2716.574 kb on - strand, within DORF19110at 2716.574 kb on - strand, within DORF19110at 2716.688 kb on + strand, within DORF19110at 2716.693 kb on + strand, within DORF19110at 2716.696 kb on - strand, within DORF19110at 2716.726 kb on - strand, within DORF19110at 2716.728 kb on + strand, within DORF19110at 2716.736 kb on - strand, within DORF19110at 2716.787 kb on + strandat 2716.809 kb on - strandat 2716.886 kb on - strandat 2716.937 kb on + strandat 2716.956 kb on - strandat 2716.980 kb on + strandat 2716.980 kb on + strandat 2716.982 kb on - strandat 2716.982 kb on - strandat 2716.988 kb on - strandat 2716.988 kb on - strandat 2716.990 kb on + strandat 2717.116 kb on - strand, within DORF19118at 2717.146 kb on + strand, within DORF19118at 2717.259 kb on + strand, within DORF19118at 2717.259 kb on + strand, within DORF19118at 2717.260 kb on + strand, within DORF19118at 2717.267 kb on - strand, within DORF19118at 2717.267 kb on - strand, within DORF19118at 2717.298 kb on + strand, within DORF19118at 2717.301 kb on - strand, within DORF19118at 2717.347 kb on + strandat 2717.381 kb on + strandat 2717.464 kb on + strand, within DVU2595at 2717.483 kb on - strand, within DVU2595at 2717.543 kb on - strand, within DVU2595at 2717.608 kb on - strand, within DVU2595at 2717.664 kb on - strand, within DVU2595at 2717.680 kb on - strand, within DVU2595at 2717.715 kb on + strand, within DVU2595at 2717.720 kb on + strand, within DVU2595at 2717.723 kb on - strand, within DVU2595at 2717.728 kb on - strand, within DVU2595at 2717.749 kb on + strand, within DVU2595at 2717.779 kb on - strand, within DVU2595at 2717.795 kb on + strand, within DVU2595at 2717.795 kb on + strand, within DVU2595at 2717.816 kb on + strand, within DVU2595at 2717.822 kb on + strand, within DVU2595at 2717.846 kb on + strand, within DVU2595

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Polyethylene glycol 5%
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2,714,849 + +1.5
2,714,883 - +0.1
2,714,958 - +0.2
2,714,965 + +1.7
2,714,986 - -1.7
2,715,032 - DVU2591 0.15 +1.3
2,715,060 + DVU2591 0.21 -0.0
2,715,294 + DVU2591 0.67 -0.1
2,715,339 - DVU2591 0.76 -0.1
2,715,385 - DVU2591 0.85 +0.1
2,715,399 + DVU2591 0.87 +0.3
2,715,472 + +0.3
2,715,724 + DVU2592 0.79 +0.0
2,715,731 + DVU2592 0.81 +0.5
2,715,731 + DVU2592 0.81 +1.9
2,715,731 + DVU2592 0.81 +0.3
2,715,731 + DVU2592 0.81 -0.7
2,715,848 - -0.3
2,716,216 - DORF19110 0.40 +0.6
2,716,282 + DORF19110 0.46 +0.9
2,716,304 + DORF19110 0.48 +0.6
2,716,309 + DORF19110 0.49 +0.4
2,716,327 - DORF19110 0.50 +0.0
2,716,521 + DORF19110 0.69 -0.6
2,716,566 + DORF19110 0.73 -0.8
2,716,566 + DORF19110 0.73 -0.1
2,716,574 - DORF19110 0.74 -0.4
2,716,574 - DORF19110 0.74 +0.3
2,716,574 - DORF19110 0.74 -1.0
2,716,574 - DORF19110 0.74 +0.0
2,716,688 + DORF19110 0.85 +0.6
2,716,693 + DORF19110 0.85 +0.4
2,716,696 - DORF19110 0.85 +0.5
2,716,726 - DORF19110 0.88 +2.3
2,716,728 + DORF19110 0.89 +0.5
2,716,736 - DORF19110 0.89 +1.3
2,716,787 + -0.1
2,716,809 - -0.6
2,716,886 - -0.3
2,716,937 + -0.5
2,716,956 - -0.6
2,716,980 + -0.0
2,716,980 + +0.6
2,716,982 - -0.3
2,716,982 - -0.7
2,716,988 - -0.0
2,716,988 - +0.4
2,716,990 + -0.1
2,717,116 - DORF19118 0.36 +0.2
2,717,146 + DORF19118 0.43 +0.1
2,717,259 + DORF19118 0.70 -0.0
2,717,259 + DORF19118 0.70 +0.4
2,717,260 + DORF19118 0.70 +1.3
2,717,267 - DORF19118 0.72 +0.5
2,717,267 - DORF19118 0.72 -0.3
2,717,298 + DORF19118 0.79 -0.6
2,717,301 - DORF19118 0.80 +0.5
2,717,347 + +0.2
2,717,381 + +0.4
2,717,464 + DVU2595 0.14 -0.3
2,717,483 - DVU2595 0.17 -0.2
2,717,543 - DVU2595 0.28 -0.0
2,717,608 - DVU2595 0.39 -0.8
2,717,664 - DVU2595 0.49 -0.5
2,717,680 - DVU2595 0.52 -0.2
2,717,715 + DVU2595 0.58 -0.2
2,717,720 + DVU2595 0.59 +0.0
2,717,723 - DVU2595 0.59 +0.6
2,717,728 - DVU2595 0.60 +0.2
2,717,749 + DVU2595 0.64 +0.1
2,717,779 - DVU2595 0.69 -0.3
2,717,795 + DVU2595 0.72 +0.7
2,717,795 + DVU2595 0.72 +1.3
2,717,816 + DVU2595 0.75 -0.2
2,717,822 + DVU2595 0.76 +0.6
2,717,846 + DVU2595 0.80 +0.6

Or see this region's nucleotide sequence