Experiment: Ra1_0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS20425 and ABZR87_RS20430 overlap by 4 nucleotides ABZR87_RS20430 and ABZR87_RS20435 overlap by 4 nucleotides ABZR87_RS20435 and ABZR87_RS20440 are separated by 270 nucleotides ABZR87_RS20440 and ABZR87_RS20445 are separated by 239 nucleotides
ABZR87_RS20425: ABZR87_RS20425 - EAL domain-containing protein, at 969,247 to 971,259
_RS20425
ABZR87_RS20430: ABZR87_RS20430 - YfiR family protein, at 971,256 to 971,828
_RS20430
ABZR87_RS20435: ABZR87_RS20435 - TonB-dependent receptor, at 971,825 to 973,795
_RS20435
ABZR87_RS20440: ABZR87_RS20440 - F0F1 ATP synthase subunit epsilon, at 974,066 to 974,485
_RS20440
ABZR87_RS20445: ABZR87_RS20445 - LysR substrate-binding domain-containing protein, at 974,725 to 975,660
_RS20445
Position (kb) 971
972
973
974 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 970.888 kb on + strand, within ABZR87_RS20425 at 970.889 kb on - strand, within ABZR87_RS20425 at 970.889 kb on - strand, within ABZR87_RS20425 at 970.952 kb on + strand, within ABZR87_RS20425 at 970.953 kb on - strand, within ABZR87_RS20425 at 971.671 kb on + strand, within ABZR87_RS20430 at 971.671 kb on + strand, within ABZR87_RS20430 at 971.671 kb on + strand, within ABZR87_RS20430 at 971.671 kb on + strand, within ABZR87_RS20430 at 971.838 kb on + strand at 971.838 kb on + strand at 971.838 kb on + strand at 971.839 kb on - strand at 971.937 kb on + strand at 971.938 kb on - strand at 971.938 kb on - strand at 972.006 kb on + strand at 972.048 kb on + strand, within ABZR87_RS20435 at 972.048 kb on + strand, within ABZR87_RS20435 at 972.049 kb on - strand, within ABZR87_RS20435 at 972.049 kb on - strand, within ABZR87_RS20435 at 972.177 kb on + strand, within ABZR87_RS20435 at 972.177 kb on + strand, within ABZR87_RS20435 at 972.177 kb on + strand, within ABZR87_RS20435 at 972.178 kb on - strand, within ABZR87_RS20435 at 972.219 kb on + strand, within ABZR87_RS20435 at 972.385 kb on - strand, within ABZR87_RS20435 at 972.385 kb on - strand, within ABZR87_RS20435 at 972.451 kb on - strand, within ABZR87_RS20435 at 972.451 kb on - strand, within ABZR87_RS20435 at 972.451 kb on - strand, within ABZR87_RS20435 at 972.492 kb on + strand, within ABZR87_RS20435 at 972.554 kb on + strand, within ABZR87_RS20435 at 972.554 kb on + strand, within ABZR87_RS20435 at 972.555 kb on - strand, within ABZR87_RS20435 at 972.555 kb on - strand, within ABZR87_RS20435 at 972.582 kb on + strand, within ABZR87_RS20435 at 972.639 kb on + strand, within ABZR87_RS20435 at 972.640 kb on - strand, within ABZR87_RS20435 at 972.678 kb on + strand, within ABZR87_RS20435 at 972.688 kb on - strand, within ABZR87_RS20435 at 972.697 kb on + strand, within ABZR87_RS20435 at 972.724 kb on - strand, within ABZR87_RS20435 at 972.724 kb on - strand, within ABZR87_RS20435 at 972.802 kb on - strand, within ABZR87_RS20435 at 972.802 kb on - strand, within ABZR87_RS20435 at 972.852 kb on + strand, within ABZR87_RS20435 at 972.852 kb on + strand, within ABZR87_RS20435 at 972.852 kb on + strand, within ABZR87_RS20435 at 972.852 kb on + strand, within ABZR87_RS20435 at 972.852 kb on + strand, within ABZR87_RS20435 at 972.852 kb on + strand, within ABZR87_RS20435 at 972.852 kb on + strand, within ABZR87_RS20435 at 972.852 kb on + strand, within ABZR87_RS20435 at 972.852 kb on + strand, within ABZR87_RS20435 at 972.852 kb on + strand, within ABZR87_RS20435 at 972.853 kb on - strand, within ABZR87_RS20435 at 972.853 kb on - strand, within ABZR87_RS20435 at 972.853 kb on - strand, within ABZR87_RS20435 at 972.853 kb on - strand, within ABZR87_RS20435 at 972.853 kb on - strand, within ABZR87_RS20435 at 972.853 kb on - strand, within ABZR87_RS20435 at 972.853 kb on - strand, within ABZR87_RS20435 at 972.853 kb on - strand, within ABZR87_RS20435 at 972.853 kb on - strand, within ABZR87_RS20435 at 972.853 kb on - strand, within ABZR87_RS20435 at 972.858 kb on + strand, within ABZR87_RS20435 at 972.858 kb on + strand, within ABZR87_RS20435 at 972.858 kb on + strand, within ABZR87_RS20435 at 972.859 kb on - strand, within ABZR87_RS20435 at 972.859 kb on - strand, within ABZR87_RS20435 at 972.877 kb on - strand, within ABZR87_RS20435 at 973.021 kb on + strand, within ABZR87_RS20435 at 973.021 kb on + strand, within ABZR87_RS20435 at 973.101 kb on + strand, within ABZR87_RS20435 at 973.155 kb on + strand, within ABZR87_RS20435 at 973.350 kb on + strand, within ABZR87_RS20435 at 973.377 kb on + strand, within ABZR87_RS20435 at 973.378 kb on - strand, within ABZR87_RS20435 at 973.536 kb on + strand, within ABZR87_RS20435 at 973.548 kb on + strand, within ABZR87_RS20435 at 973.549 kb on - strand, within ABZR87_RS20435 at 973.549 kb on - strand, within ABZR87_RS20435 at 973.549 kb on - strand, within ABZR87_RS20435 at 973.549 kb on - strand, within ABZR87_RS20435 at 973.557 kb on + strand, within ABZR87_RS20435 at 973.557 kb on + strand, within ABZR87_RS20435 at 973.557 kb on + strand, within ABZR87_RS20435 at 973.557 kb on + strand, within ABZR87_RS20435 at 973.557 kb on + strand, within ABZR87_RS20435 at 973.558 kb on - strand, within ABZR87_RS20435 at 973.558 kb on - strand, within ABZR87_RS20435 at 973.605 kb on + strand at 973.605 kb on + strand at 973.605 kb on + strand at 973.671 kb on + strand at 973.671 kb on + strand at 973.671 kb on + strand at 973.671 kb on + strand at 973.672 kb on - strand at 973.672 kb on - strand at 973.980 kb on + strand at 973.981 kb on - strand at 973.992 kb on - strand at 974.440 kb on - strand, within ABZR87_RS20440 at 974.509 kb on - strand at 974.509 kb on - strand at 974.509 kb on - strand at 974.638 kb on + strand at 974.638 kb on + strand at 974.655 kb on + strand at 974.655 kb on + strand at 974.656 kb on - strand at 974.656 kb on - strand at 974.656 kb on - strand at 974.656 kb on - strand at 974.674 kb on + strand at 974.674 kb on + strand at 974.674 kb on + strand at 974.674 kb on + strand at 974.675 kb on - strand at 974.738 kb on + strand at 974.738 kb on + strand at 974.738 kb on + strand at 974.738 kb on + strand at 974.738 kb on + strand at 974.738 kb on + strand at 974.738 kb on + strand at 974.739 kb on - strand at 974.739 kb on - strand at 974.739 kb on - strand at 974.739 kb on - strand at 974.739 kb on - strand at 974.739 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ra1_0.1 remove 970,888 + ABZR87_RS20425 0.82 +2.0 970,889 - ABZR87_RS20425 0.82 +1.1 970,889 - ABZR87_RS20425 0.82 -2.1 970,952 + ABZR87_RS20425 0.85 +0.6 970,953 - ABZR87_RS20425 0.85 -0.0 971,671 + ABZR87_RS20430 0.72 +0.0 971,671 + ABZR87_RS20430 0.72 +1.4 971,671 + ABZR87_RS20430 0.72 +0.1 971,671 + ABZR87_RS20430 0.72 +0.3 971,838 + -0.0 971,838 + +0.6 971,838 + +0.5 971,839 - +0.4 971,937 + +1.0 971,938 - +2.0 971,938 - +1.4 972,006 + -0.2 972,048 + ABZR87_RS20435 0.11 +1.0 972,048 + ABZR87_RS20435 0.11 +0.5 972,049 - ABZR87_RS20435 0.11 +1.5 972,049 - ABZR87_RS20435 0.11 +0.6 972,177 + ABZR87_RS20435 0.18 +0.7 972,177 + ABZR87_RS20435 0.18 +0.9 972,177 + ABZR87_RS20435 0.18 -0.8 972,178 - ABZR87_RS20435 0.18 +0.8 972,219 + ABZR87_RS20435 0.20 -0.1 972,385 - ABZR87_RS20435 0.28 +1.9 972,385 - ABZR87_RS20435 0.28 +1.0 972,451 - ABZR87_RS20435 0.32 +1.8 972,451 - ABZR87_RS20435 0.32 +0.7 972,451 - ABZR87_RS20435 0.32 +0.5 972,492 + ABZR87_RS20435 0.34 -0.1 972,554 + ABZR87_RS20435 0.37 +1.6 972,554 + ABZR87_RS20435 0.37 +0.3 972,555 - ABZR87_RS20435 0.37 +1.7 972,555 - ABZR87_RS20435 0.37 +1.1 972,582 + ABZR87_RS20435 0.38 +0.1 972,639 + ABZR87_RS20435 0.41 +0.5 972,640 - ABZR87_RS20435 0.41 +1.3 972,678 + ABZR87_RS20435 0.43 +1.1 972,688 - ABZR87_RS20435 0.44 +1.2 972,697 + ABZR87_RS20435 0.44 -1.6 972,724 - ABZR87_RS20435 0.46 +3.3 972,724 - ABZR87_RS20435 0.46 +1.8 972,802 - ABZR87_RS20435 0.50 +0.5 972,802 - ABZR87_RS20435 0.50 +2.0 972,852 + ABZR87_RS20435 0.52 -0.4 972,852 + ABZR87_RS20435 0.52 +0.2 972,852 + ABZR87_RS20435 0.52 +0.9 972,852 + ABZR87_RS20435 0.52 +0.5 972,852 + ABZR87_RS20435 0.52 -1.7 972,852 + ABZR87_RS20435 0.52 -0.6 972,852 + ABZR87_RS20435 0.52 +0.0 972,852 + ABZR87_RS20435 0.52 +0.4 972,852 + ABZR87_RS20435 0.52 +0.5 972,852 + ABZR87_RS20435 0.52 -0.3 972,853 - ABZR87_RS20435 0.52 +1.3 972,853 - ABZR87_RS20435 0.52 +1.7 972,853 - ABZR87_RS20435 0.52 +1.4 972,853 - ABZR87_RS20435 0.52 +1.1 972,853 - ABZR87_RS20435 0.52 +1.2 972,853 - ABZR87_RS20435 0.52 +1.1 972,853 - ABZR87_RS20435 0.52 -0.6 972,853 - ABZR87_RS20435 0.52 +2.8 972,853 - ABZR87_RS20435 0.52 +1.0 972,853 - ABZR87_RS20435 0.52 +2.2 972,858 + ABZR87_RS20435 0.52 -0.2 972,858 + ABZR87_RS20435 0.52 -0.6 972,858 + ABZR87_RS20435 0.52 -0.7 972,859 - ABZR87_RS20435 0.52 +1.3 972,859 - ABZR87_RS20435 0.52 +1.4 972,877 - ABZR87_RS20435 0.53 +1.8 973,021 + ABZR87_RS20435 0.61 +1.2 973,021 + ABZR87_RS20435 0.61 -1.8 973,101 + ABZR87_RS20435 0.65 +0.1 973,155 + ABZR87_RS20435 0.67 +0.3 973,350 + ABZR87_RS20435 0.77 -1.7 973,377 + ABZR87_RS20435 0.79 +0.9 973,378 - ABZR87_RS20435 0.79 -0.2 973,536 + ABZR87_RS20435 0.87 -1.2 973,548 + ABZR87_RS20435 0.87 -0.6 973,549 - ABZR87_RS20435 0.87 +0.2 973,549 - ABZR87_RS20435 0.87 +1.2 973,549 - ABZR87_RS20435 0.87 -0.3 973,549 - ABZR87_RS20435 0.87 +1.2 973,557 + ABZR87_RS20435 0.88 +0.6 973,557 + ABZR87_RS20435 0.88 +0.1 973,557 + ABZR87_RS20435 0.88 +0.4 973,557 + ABZR87_RS20435 0.88 +0.2 973,557 + ABZR87_RS20435 0.88 +1.9 973,558 - ABZR87_RS20435 0.88 +1.0 973,558 - ABZR87_RS20435 0.88 +0.6 973,605 + +2.4 973,605 + +1.0 973,605 + +0.2 973,671 + -0.2 973,671 + -2.1 973,671 + -0.6 973,671 + -0.2 973,672 - +1.0 973,672 - +0.7 973,980 + +1.1 973,981 - -1.0 973,992 - +0.4 974,440 - ABZR87_RS20440 0.89 +0.4 974,509 - -0.6 974,509 - +0.1 974,509 - -0.8 974,638 + -0.3 974,638 + +0.3 974,655 + -1.1 974,655 + -0.5 974,656 - -1.1 974,656 - +0.6 974,656 - -0.1 974,656 - +0.4 974,674 + +0.6 974,674 + -0.1 974,674 + +1.0 974,674 + +0.9 974,675 - +0.1 974,738 + +0.6 974,738 + -0.2 974,738 + -0.2 974,738 + +0.2 974,738 + +0.8 974,738 + +0.3 974,738 + -1.9 974,739 - -1.7 974,739 - -0.1 974,739 - -0.2 974,739 - +0.0 974,739 - +0.8 974,739 - -0.6
Or see this region's nucleotide sequence