Experiment: Ra1_0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS17285 and ABZR87_RS17290 are separated by 683 nucleotides ABZR87_RS17290 and ABZR87_RS17295 are separated by 21 nucleotides
ABZR87_RS17285: ABZR87_RS17285 - ferrous iron transport protein A, at 233,913 to 234,221
_RS17285
ABZR87_RS17290: ABZR87_RS17290 - EAL domain-containing protein, at 234,905 to 238,456
_RS17290
ABZR87_RS17295: ABZR87_RS17295 - PAS domain-containing methyl-accepting chemotaxis protein, at 238,478 to 240,067
_RS17295
Position (kb) 234
235
236
237
238
239 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 233.915 kb on - strand at 233.915 kb on - strand at 233.915 kb on - strand at 234.236 kb on - strand at 234.241 kb on - strand at 234.241 kb on - strand at 234.334 kb on + strand at 234.334 kb on + strand at 234.334 kb on + strand at 234.334 kb on + strand at 234.335 kb on - strand at 234.335 kb on - strand at 234.335 kb on - strand at 234.353 kb on + strand at 234.353 kb on + strand at 234.354 kb on - strand at 234.436 kb on + strand at 234.436 kb on + strand at 234.436 kb on + strand at 234.436 kb on + strand at 234.436 kb on + strand at 234.437 kb on - strand at 234.437 kb on - strand at 234.437 kb on - strand at 234.437 kb on - strand at 234.437 kb on - strand at 234.437 kb on - strand at 234.442 kb on - strand at 234.450 kb on + strand at 234.451 kb on - strand at 234.475 kb on + strand at 234.476 kb on - strand at 234.476 kb on - strand at 234.512 kb on + strand at 234.512 kb on + strand at 234.513 kb on - strand at 234.554 kb on + strand at 234.554 kb on + strand at 234.555 kb on - strand at 234.669 kb on + strand at 234.669 kb on + strand at 234.669 kb on + strand at 234.669 kb on + strand at 234.669 kb on + strand at 234.669 kb on + strand at 234.669 kb on + strand at 234.669 kb on + strand at 234.669 kb on + strand at 234.669 kb on + strand at 234.669 kb on + strand at 234.670 kb on - strand at 234.670 kb on - strand at 234.670 kb on - strand at 234.670 kb on - strand at 234.670 kb on - strand at 234.670 kb on - strand at 234.670 kb on - strand at 234.670 kb on - strand at 234.670 kb on - strand at 234.670 kb on - strand at 234.670 kb on - strand at 234.670 kb on - strand at 234.724 kb on + strand at 234.725 kb on - strand at 234.883 kb on + strand at 234.883 kb on + strand at 234.883 kb on + strand at 234.883 kb on + strand at 234.883 kb on + strand at 234.884 kb on - strand at 234.884 kb on - strand at 234.884 kb on - strand at 234.884 kb on - strand at 234.884 kb on - strand at 234.884 kb on - strand at 234.884 kb on - strand at 234.892 kb on - strand at 235.013 kb on + strand at 235.013 kb on + strand at 235.014 kb on - strand at 235.108 kb on + strand at 235.108 kb on + strand at 235.108 kb on + strand at 235.109 kb on - strand at 235.109 kb on - strand at 235.109 kb on - strand at 235.109 kb on - strand at 235.195 kb on + strand at 235.248 kb on + strand at 235.249 kb on - strand at 235.249 kb on - strand at 235.249 kb on - strand at 235.430 kb on + strand, within ABZR87_RS17290 at 235.431 kb on - strand, within ABZR87_RS17290 at 235.431 kb on - strand, within ABZR87_RS17290 at 235.431 kb on - strand, within ABZR87_RS17290 at 235.497 kb on - strand, within ABZR87_RS17290 at 235.497 kb on - strand, within ABZR87_RS17290 at 235.869 kb on - strand, within ABZR87_RS17290 at 236.188 kb on - strand, within ABZR87_RS17290 at 236.188 kb on - strand, within ABZR87_RS17290 at 236.188 kb on - strand, within ABZR87_RS17290 at 236.188 kb on - strand, within ABZR87_RS17290 at 236.188 kb on - strand, within ABZR87_RS17290 at 236.188 kb on - strand, within ABZR87_RS17290 at 236.232 kb on + strand, within ABZR87_RS17290 at 236.325 kb on - strand, within ABZR87_RS17290 at 236.510 kb on + strand, within ABZR87_RS17290 at 236.510 kb on + strand, within ABZR87_RS17290 at 236.510 kb on + strand, within ABZR87_RS17290 at 236.510 kb on + strand, within ABZR87_RS17290 at 236.510 kb on + strand, within ABZR87_RS17290 at 236.510 kb on + strand, within ABZR87_RS17290 at 236.511 kb on - strand, within ABZR87_RS17290 at 236.511 kb on - strand, within ABZR87_RS17290 at 236.511 kb on - strand, within ABZR87_RS17290 at 236.511 kb on - strand, within ABZR87_RS17290 at 236.585 kb on + strand, within ABZR87_RS17290 at 236.585 kb on + strand, within ABZR87_RS17290 at 236.585 kb on + strand, within ABZR87_RS17290 at 236.585 kb on + strand, within ABZR87_RS17290 at 236.585 kb on + strand, within ABZR87_RS17290 at 236.585 kb on + strand, within ABZR87_RS17290 at 236.585 kb on + strand, within ABZR87_RS17290 at 236.585 kb on + strand, within ABZR87_RS17290 at 236.585 kb on + strand, within ABZR87_RS17290 at 236.585 kb on + strand, within ABZR87_RS17290 at 236.586 kb on - strand, within ABZR87_RS17290 at 236.586 kb on - strand, within ABZR87_RS17290 at 236.586 kb on - strand, within ABZR87_RS17290 at 236.586 kb on - strand, within ABZR87_RS17290 at 236.586 kb on - strand, within ABZR87_RS17290 at 236.586 kb on - strand, within ABZR87_RS17290 at 236.586 kb on - strand, within ABZR87_RS17290 at 236.586 kb on - strand, within ABZR87_RS17290 at 236.587 kb on + strand, within ABZR87_RS17290 at 236.588 kb on - strand, within ABZR87_RS17290 at 236.636 kb on + strand, within ABZR87_RS17290 at 236.830 kb on + strand, within ABZR87_RS17290 at 236.870 kb on + strand, within ABZR87_RS17290 at 236.870 kb on + strand, within ABZR87_RS17290 at 236.870 kb on + strand, within ABZR87_RS17290 at 236.870 kb on + strand, within ABZR87_RS17290 at 236.871 kb on - strand, within ABZR87_RS17290 at 236.871 kb on - strand, within ABZR87_RS17290 at 237.110 kb on + strand, within ABZR87_RS17290 at 237.111 kb on - strand, within ABZR87_RS17290 at 237.111 kb on - strand, within ABZR87_RS17290 at 237.111 kb on - strand, within ABZR87_RS17290 at 237.272 kb on + strand, within ABZR87_RS17290 at 237.272 kb on + strand, within ABZR87_RS17290 at 237.273 kb on - strand, within ABZR87_RS17290 at 237.273 kb on - strand, within ABZR87_RS17290 at 237.273 kb on - strand, within ABZR87_RS17290 at 237.273 kb on - strand, within ABZR87_RS17290 at 237.289 kb on + strand, within ABZR87_RS17290 at 237.289 kb on + strand, within ABZR87_RS17290 at 237.546 kb on - strand, within ABZR87_RS17290 at 237.546 kb on - strand, within ABZR87_RS17290 at 237.602 kb on + strand, within ABZR87_RS17290 at 237.602 kb on + strand, within ABZR87_RS17290 at 237.602 kb on + strand, within ABZR87_RS17290 at 237.602 kb on + strand, within ABZR87_RS17290 at 237.603 kb on - strand, within ABZR87_RS17290 at 237.603 kb on - strand, within ABZR87_RS17290 at 237.603 kb on - strand, within ABZR87_RS17290 at 237.603 kb on - strand, within ABZR87_RS17290 at 237.603 kb on - strand, within ABZR87_RS17290 at 237.605 kb on + strand, within ABZR87_RS17290 at 237.605 kb on + strand, within ABZR87_RS17290 at 237.605 kb on + strand, within ABZR87_RS17290 at 237.605 kb on + strand, within ABZR87_RS17290 at 237.605 kb on + strand, within ABZR87_RS17290 at 237.606 kb on - strand, within ABZR87_RS17290 at 237.606 kb on - strand, within ABZR87_RS17290 at 237.672 kb on - strand, within ABZR87_RS17290 at 237.735 kb on - strand, within ABZR87_RS17290 at 238.025 kb on + strand, within ABZR87_RS17290 at 238.025 kb on + strand, within ABZR87_RS17290 at 238.178 kb on + strand at 238.178 kb on + strand at 238.383 kb on - strand at 238.383 kb on - strand at 238.383 kb on - strand at 238.385 kb on + strand at 238.385 kb on + strand at 238.386 kb on - strand at 238.454 kb on + strand at 238.454 kb on + strand at 238.454 kb on + strand at 238.455 kb on - strand at 238.479 kb on + strand at 239.149 kb on + strand, within ABZR87_RS17295
Per-strain Table
Position Strand Gene LocusTag Fraction Ra1_0.1 remove 233,915 - +1.0 233,915 - -0.4 233,915 - +0.3 234,236 - +0.2 234,241 - -1.4 234,241 - +0.2 234,334 + +0.9 234,334 + -0.6 234,334 + -0.6 234,334 + -0.2 234,335 - -1.2 234,335 - +1.0 234,335 - -0.4 234,353 + -1.1 234,353 + -0.4 234,354 - -0.3 234,436 + -1.3 234,436 + -1.1 234,436 + -0.7 234,436 + -0.4 234,436 + -0.6 234,437 - -1.3 234,437 - +2.0 234,437 - -2.2 234,437 - -0.1 234,437 - -1.3 234,437 - +0.8 234,442 - -1.1 234,450 + -1.0 234,451 - -0.6 234,475 + -0.4 234,476 - -0.6 234,476 - -1.6 234,512 + +2.6 234,512 + -1.1 234,513 - -2.2 234,554 + -0.1 234,554 + +0.4 234,555 - -0.8 234,669 + +0.1 234,669 + +1.8 234,669 + +0.2 234,669 + +0.9 234,669 + +0.2 234,669 + +1.7 234,669 + -0.3 234,669 + -1.6 234,669 + +1.4 234,669 + +0.4 234,669 + -0.9 234,670 - -1.3 234,670 - -0.1 234,670 - +0.1 234,670 - +0.2 234,670 - -0.5 234,670 - +0.9 234,670 - -0.0 234,670 - -1.6 234,670 - +0.9 234,670 - -0.6 234,670 - +0.7 234,670 - -1.3 234,724 + +1.6 234,725 - -0.4 234,883 + -0.0 234,883 + -0.9 234,883 + -0.6 234,883 + +1.4 234,883 + +0.5 234,884 - -2.2 234,884 - -0.6 234,884 - -0.6 234,884 - -1.7 234,884 - -2.2 234,884 - +2.6 234,884 - -1.0 234,892 - -1.4 235,013 + +0.3 235,013 + -1.9 235,014 - -0.3 235,108 + -1.8 235,108 + -1.0 235,108 + -1.4 235,109 - -3.3 235,109 - -0.6 235,109 - -0.6 235,109 - -0.9 235,195 + +1.0 235,248 + -1.0 235,249 - -1.1 235,249 - +0.7 235,249 - -1.4 235,430 + ABZR87_RS17290 0.15 -0.0 235,431 - ABZR87_RS17290 0.15 -1.2 235,431 - ABZR87_RS17290 0.15 -0.1 235,431 - ABZR87_RS17290 0.15 -0.6 235,497 - ABZR87_RS17290 0.17 -1.8 235,497 - ABZR87_RS17290 0.17 -1.7 235,869 - ABZR87_RS17290 0.27 +0.9 236,188 - ABZR87_RS17290 0.36 -2.3 236,188 - ABZR87_RS17290 0.36 -1.7 236,188 - ABZR87_RS17290 0.36 -2.1 236,188 - ABZR87_RS17290 0.36 -0.1 236,188 - ABZR87_RS17290 0.36 -0.4 236,188 - ABZR87_RS17290 0.36 -1.2 236,232 + ABZR87_RS17290 0.37 -1.7 236,325 - ABZR87_RS17290 0.40 +0.4 236,510 + ABZR87_RS17290 0.45 -1.7 236,510 + ABZR87_RS17290 0.45 +0.6 236,510 + ABZR87_RS17290 0.45 -0.4 236,510 + ABZR87_RS17290 0.45 +0.8 236,510 + ABZR87_RS17290 0.45 -0.9 236,510 + ABZR87_RS17290 0.45 -0.8 236,511 - ABZR87_RS17290 0.45 -2.0 236,511 - ABZR87_RS17290 0.45 +0.3 236,511 - ABZR87_RS17290 0.45 -1.7 236,511 - ABZR87_RS17290 0.45 -1.5 236,585 + ABZR87_RS17290 0.47 +2.6 236,585 + ABZR87_RS17290 0.47 -1.8 236,585 + ABZR87_RS17290 0.47 +0.5 236,585 + ABZR87_RS17290 0.47 +0.2 236,585 + ABZR87_RS17290 0.47 -1.9 236,585 + ABZR87_RS17290 0.47 -0.1 236,585 + ABZR87_RS17290 0.47 -0.1 236,585 + ABZR87_RS17290 0.47 -1.4 236,585 + ABZR87_RS17290 0.47 +0.6 236,585 + ABZR87_RS17290 0.47 -1.6 236,586 - ABZR87_RS17290 0.47 -1.9 236,586 - ABZR87_RS17290 0.47 -1.5 236,586 - ABZR87_RS17290 0.47 -1.2 236,586 - ABZR87_RS17290 0.47 -2.1 236,586 - ABZR87_RS17290 0.47 +0.1 236,586 - ABZR87_RS17290 0.47 -1.3 236,586 - ABZR87_RS17290 0.47 -1.7 236,586 - ABZR87_RS17290 0.47 -1.8 236,587 + ABZR87_RS17290 0.47 -0.8 236,588 - ABZR87_RS17290 0.47 +0.3 236,636 + ABZR87_RS17290 0.49 -1.9 236,830 + ABZR87_RS17290 0.54 +0.3 236,870 + ABZR87_RS17290 0.55 -2.3 236,870 + ABZR87_RS17290 0.55 -1.1 236,870 + ABZR87_RS17290 0.55 -1.7 236,870 + ABZR87_RS17290 0.55 -1.7 236,871 - ABZR87_RS17290 0.55 -0.0 236,871 - ABZR87_RS17290 0.55 +1.0 237,110 + ABZR87_RS17290 0.62 +0.1 237,111 - ABZR87_RS17290 0.62 -0.7 237,111 - ABZR87_RS17290 0.62 -1.5 237,111 - ABZR87_RS17290 0.62 -2.0 237,272 + ABZR87_RS17290 0.67 -0.4 237,272 + ABZR87_RS17290 0.67 -1.5 237,273 - ABZR87_RS17290 0.67 -0.7 237,273 - ABZR87_RS17290 0.67 -1.7 237,273 - ABZR87_RS17290 0.67 -1.3 237,273 - ABZR87_RS17290 0.67 +0.3 237,289 + ABZR87_RS17290 0.67 -0.8 237,289 + ABZR87_RS17290 0.67 -0.2 237,546 - ABZR87_RS17290 0.74 -2.4 237,546 - ABZR87_RS17290 0.74 -2.5 237,602 + ABZR87_RS17290 0.76 -2.4 237,602 + ABZR87_RS17290 0.76 -1.4 237,602 + ABZR87_RS17290 0.76 -1.4 237,602 + ABZR87_RS17290 0.76 -1.4 237,603 - ABZR87_RS17290 0.76 -0.7 237,603 - ABZR87_RS17290 0.76 -1.5 237,603 - ABZR87_RS17290 0.76 -0.4 237,603 - ABZR87_RS17290 0.76 -1.7 237,603 - ABZR87_RS17290 0.76 -0.5 237,605 + ABZR87_RS17290 0.76 -1.6 237,605 + ABZR87_RS17290 0.76 -0.2 237,605 + ABZR87_RS17290 0.76 -0.7 237,605 + ABZR87_RS17290 0.76 -0.4 237,605 + ABZR87_RS17290 0.76 -2.0 237,606 - ABZR87_RS17290 0.76 -1.2 237,606 - ABZR87_RS17290 0.76 -1.2 237,672 - ABZR87_RS17290 0.78 -1.6 237,735 - ABZR87_RS17290 0.80 -1.0 238,025 + ABZR87_RS17290 0.88 -0.0 238,025 + ABZR87_RS17290 0.88 +0.2 238,178 + -1.1 238,178 + +0.6 238,383 - +1.0 238,383 - -1.0 238,383 - -0.3 238,385 + -1.3 238,385 + -0.6 238,386 - -0.7 238,454 + +0.3 238,454 + +0.7 238,454 + +0.9 238,455 - +2.0 238,479 + +0.2 239,149 + ABZR87_RS17295 0.42 -0.0
Or see this region's nucleotide sequence