Experiment: Ra1_0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS08745 and ABZR87_RS08750 are separated by 43 nucleotides ABZR87_RS08750 and ABZR87_RS08755 overlap by 1 nucleotides
ABZR87_RS08745: ABZR87_RS08745 - phosphomannomutase/phosphoglucomutase, at 1,859,096 to 1,860,484
_RS08745
ABZR87_RS08750: ABZR87_RS08750 - lipopolysaccharide heptosyltransferase I, at 1,860,528 to 1,861,526
_RS08750
ABZR87_RS08755: ABZR87_RS08755 - lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase, at 1,861,526 to 1,862,842
_RS08755
Position (kb)
1860
1861
1862 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1860.552 kb on - strand at 1860.596 kb on + strand at 1860.786 kb on + strand, within ABZR87_RS08750 at 1860.787 kb on - strand, within ABZR87_RS08750 at 1860.903 kb on + strand, within ABZR87_RS08750 at 1860.903 kb on + strand, within ABZR87_RS08750 at 1860.927 kb on + strand, within ABZR87_RS08750 at 1860.927 kb on + strand, within ABZR87_RS08750 at 1861.077 kb on + strand, within ABZR87_RS08750 at 1861.077 kb on + strand, within ABZR87_RS08750 at 1861.170 kb on + strand, within ABZR87_RS08750 at 1861.170 kb on + strand, within ABZR87_RS08750 at 1861.398 kb on + strand, within ABZR87_RS08750 at 1861.398 kb on + strand, within ABZR87_RS08750 at 1861.398 kb on + strand, within ABZR87_RS08750 at 1861.431 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ra1_0.1 remove 1,860,552 - +0.3 1,860,596 + -2.5 1,860,786 + ABZR87_RS08750 0.26 +2.1 1,860,787 - ABZR87_RS08750 0.26 +1.7 1,860,903 + ABZR87_RS08750 0.38 -0.5 1,860,903 + ABZR87_RS08750 0.38 -0.5 1,860,927 + ABZR87_RS08750 0.40 -1.4 1,860,927 + ABZR87_RS08750 0.40 -1.4 1,861,077 + ABZR87_RS08750 0.55 -1.7 1,861,077 + ABZR87_RS08750 0.55 -1.7 1,861,170 + ABZR87_RS08750 0.64 +1.5 1,861,170 + ABZR87_RS08750 0.64 -1.5 1,861,398 + ABZR87_RS08750 0.87 +1.1 1,861,398 + ABZR87_RS08750 0.87 +0.7 1,861,398 + ABZR87_RS08750 0.87 -2.0 1,861,431 + -1.1
Or see this region's nucleotide sequence