Experiment: Ra1_0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS03765 and ABZR87_RS03770 are separated by 40 nucleotides ABZR87_RS03770 and ABZR87_RS03775 are separated by 16 nucleotides ABZR87_RS03775 and ABZR87_RS03780 are separated by 18 nucleotides ABZR87_RS03780 and ABZR87_RS03785 are separated by 10 nucleotides ABZR87_RS03785 and ABZR87_RS03790 are separated by 171 nucleotides
ABZR87_RS03765: ABZR87_RS03765 - sulfur oxidation c-type cytochrome SoxA, at 782,057 to 782,857
_RS03765
ABZR87_RS03770: ABZR87_RS03770 - DsrE family protein, at 782,898 to 783,353
_RS03770
ABZR87_RS03775: ABZR87_RS03775 - thiosulfate oxidation carrier complex protein SoxZ, at 783,370 to 783,681
_RS03775
ABZR87_RS03780: ABZR87_RS03780 - thiosulfate oxidation carrier protein SoxY, at 783,700 to 784,170
_RS03780
ABZR87_RS03785: ABZR87_RS03785 - c-type cytochrome, at 784,181 to 784,528
_RS03785
ABZR87_RS03790: ABZR87_RS03790 - EamA family transporter, at 784,700 to 785,587
_RS03790
Position (kb) 783
784
785 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 782.767 kb on - strand, within ABZR87_RS03765 at 782.909 kb on + strand at 782.909 kb on + strand at 782.909 kb on + strand at 782.910 kb on - strand at 782.911 kb on + strand at 782.911 kb on + strand at 782.911 kb on + strand at 782.911 kb on + strand at 782.912 kb on - strand at 782.912 kb on - strand at 782.912 kb on - strand at 783.235 kb on + strand, within ABZR87_RS03770 at 783.235 kb on + strand, within ABZR87_RS03770 at 783.236 kb on - strand, within ABZR87_RS03770 at 783.236 kb on - strand, within ABZR87_RS03770 at 783.236 kb on - strand, within ABZR87_RS03770 at 783.236 kb on - strand, within ABZR87_RS03770 at 783.236 kb on - strand, within ABZR87_RS03770 at 783.236 kb on - strand, within ABZR87_RS03770 at 783.247 kb on + strand, within ABZR87_RS03770 at 783.247 kb on + strand, within ABZR87_RS03770 at 783.248 kb on - strand, within ABZR87_RS03770 at 783.248 kb on - strand, within ABZR87_RS03770 at 783.371 kb on + strand at 783.371 kb on + strand at 783.378 kb on + strand at 783.378 kb on + strand at 783.378 kb on + strand at 783.379 kb on - strand at 783.379 kb on - strand at 783.379 kb on - strand at 783.379 kb on - strand at 783.379 kb on - strand at 783.379 kb on - strand at 783.780 kb on - strand, within ABZR87_RS03780 at 783.780 kb on - strand, within ABZR87_RS03780 at 784.341 kb on + strand, within ABZR87_RS03785 at 784.341 kb on + strand, within ABZR87_RS03785 at 784.341 kb on + strand, within ABZR87_RS03785 at 784.341 kb on + strand, within ABZR87_RS03785 at 784.342 kb on - strand, within ABZR87_RS03785 at 784.363 kb on - strand, within ABZR87_RS03785 at 784.363 kb on - strand, within ABZR87_RS03785 at 784.594 kb on + strand at 784.595 kb on - strand at 784.595 kb on - strand at 784.620 kb on + strand at 784.620 kb on + strand at 784.620 kb on + strand at 784.620 kb on + strand at 784.620 kb on + strand at 784.620 kb on + strand at 784.620 kb on + strand at 784.620 kb on + strand at 784.621 kb on - strand at 784.621 kb on - strand at 784.621 kb on - strand at 784.621 kb on - strand at 784.662 kb on - strand at 784.881 kb on + strand, within ABZR87_RS03790 at 784.911 kb on + strand, within ABZR87_RS03790 at 784.911 kb on + strand, within ABZR87_RS03790 at 784.911 kb on + strand, within ABZR87_RS03790 at 784.912 kb on - strand, within ABZR87_RS03790 at 784.941 kb on + strand, within ABZR87_RS03790 at 784.941 kb on + strand, within ABZR87_RS03790 at 784.941 kb on + strand, within ABZR87_RS03790 at 784.942 kb on - strand, within ABZR87_RS03790 at 784.942 kb on - strand, within ABZR87_RS03790 at 784.942 kb on - strand, within ABZR87_RS03790 at 784.942 kb on - strand, within ABZR87_RS03790 at 784.942 kb on - strand, within ABZR87_RS03790 at 784.942 kb on - strand, within ABZR87_RS03790 at 784.942 kb on - strand, within ABZR87_RS03790 at 784.942 kb on - strand, within ABZR87_RS03790 at 784.942 kb on - strand, within ABZR87_RS03790 at 784.984 kb on + strand, within ABZR87_RS03790 at 784.985 kb on - strand, within ABZR87_RS03790 at 785.016 kb on + strand, within ABZR87_RS03790 at 785.016 kb on + strand, within ABZR87_RS03790 at 785.016 kb on + strand, within ABZR87_RS03790 at 785.017 kb on - strand, within ABZR87_RS03790 at 785.017 kb on - strand, within ABZR87_RS03790 at 785.017 kb on - strand, within ABZR87_RS03790
Per-strain Table
Position Strand Gene LocusTag Fraction Ra1_0.1 remove 782,767 - ABZR87_RS03765 0.89 -0.5 782,909 + -0.1 782,909 + -0.1 782,909 + +0.4 782,910 - +0.7 782,911 + -2.2 782,911 + -0.2 782,911 + -1.2 782,911 + -1.5 782,912 - -0.9 782,912 - -0.4 782,912 - -0.5 783,235 + ABZR87_RS03770 0.74 -0.5 783,235 + ABZR87_RS03770 0.74 -0.1 783,236 - ABZR87_RS03770 0.74 +0.7 783,236 - ABZR87_RS03770 0.74 +1.1 783,236 - ABZR87_RS03770 0.74 -0.9 783,236 - ABZR87_RS03770 0.74 -2.0 783,236 - ABZR87_RS03770 0.74 -0.4 783,236 - ABZR87_RS03770 0.74 +1.3 783,247 + ABZR87_RS03770 0.77 -2.1 783,247 + ABZR87_RS03770 0.77 -0.5 783,248 - ABZR87_RS03770 0.77 -2.1 783,248 - ABZR87_RS03770 0.77 -1.2 783,371 + +1.0 783,371 + +0.1 783,378 + +0.5 783,378 + +2.0 783,378 + -0.1 783,379 - +0.4 783,379 - +0.3 783,379 - -0.4 783,379 - +1.5 783,379 - -0.9 783,379 - +0.1 783,780 - ABZR87_RS03780 0.17 -0.3 783,780 - ABZR87_RS03780 0.17 -2.8 784,341 + ABZR87_RS03785 0.46 +1.0 784,341 + ABZR87_RS03785 0.46 +0.6 784,341 + ABZR87_RS03785 0.46 +0.5 784,341 + ABZR87_RS03785 0.46 +1.3 784,342 - ABZR87_RS03785 0.46 +0.6 784,363 - ABZR87_RS03785 0.52 -0.2 784,363 - ABZR87_RS03785 0.52 +0.7 784,594 + -1.7 784,595 - +0.6 784,595 - -0.3 784,620 + +0.5 784,620 + +0.3 784,620 + -1.4 784,620 + +0.4 784,620 + -0.5 784,620 + -0.2 784,620 + +0.6 784,620 + -0.6 784,621 - -0.3 784,621 - +0.5 784,621 - -1.3 784,621 - -0.2 784,662 - +0.1 784,881 + ABZR87_RS03790 0.20 -0.4 784,911 + ABZR87_RS03790 0.24 +0.9 784,911 + ABZR87_RS03790 0.24 +0.0 784,911 + ABZR87_RS03790 0.24 +0.1 784,912 - ABZR87_RS03790 0.24 +1.6 784,941 + ABZR87_RS03790 0.27 -1.7 784,941 + ABZR87_RS03790 0.27 -0.5 784,941 + ABZR87_RS03790 0.27 +0.7 784,942 - ABZR87_RS03790 0.27 -1.5 784,942 - ABZR87_RS03790 0.27 -1.0 784,942 - ABZR87_RS03790 0.27 +0.0 784,942 - ABZR87_RS03790 0.27 +0.9 784,942 - ABZR87_RS03790 0.27 -0.2 784,942 - ABZR87_RS03790 0.27 -0.7 784,942 - ABZR87_RS03790 0.27 +0.3 784,942 - ABZR87_RS03790 0.27 -0.1 784,942 - ABZR87_RS03790 0.27 +0.3 784,984 + ABZR87_RS03790 0.32 -0.9 784,985 - ABZR87_RS03790 0.32 -0.1 785,016 + ABZR87_RS03790 0.36 -0.6 785,016 + ABZR87_RS03790 0.36 +0.2 785,016 + ABZR87_RS03790 0.36 -3.2 785,017 - ABZR87_RS03790 0.36 +0.4 785,017 - ABZR87_RS03790 0.36 -0.5 785,017 - ABZR87_RS03790 0.36 +0.1
Or see this region's nucleotide sequence