Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS02660

Experiment: Ra1_0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS02650 and ABZR87_RS02655 are separated by 95 nucleotidesABZR87_RS02655 and ABZR87_RS02660 are separated by 8 nucleotidesABZR87_RS02660 and ABZR87_RS02665 are separated by 25 nucleotidesABZR87_RS02665 and ABZR87_RS02670 are separated by 108 nucleotides ABZR87_RS02650: ABZR87_RS02650 - protein-methionine-sulfoxide reductase catalytic subunit MsrP, at 563,393 to 564,388 _RS02650 ABZR87_RS02655: ABZR87_RS02655 - anti-sigma factor, at 564,484 to 565,344 _RS02655 ABZR87_RS02660: ABZR87_RS02660 - RNA polymerase sigma factor, at 565,353 to 565,934 _RS02660 ABZR87_RS02665: ABZR87_RS02665 - ATP-binding protein, at 565,960 to 566,388 _RS02665 ABZR87_RS02670: ABZR87_RS02670 - c-type cytochrome biogenesis protein CcsB, at 566,497 to 567,684 _RS02670 Position (kb) 565 566Strain fitness (log2 ratio) -2 -1 0 1 2at 564.480 kb on - strandat 564.480 kb on - strandat 564.480 kb on - strandat 564.486 kb on - strandat 564.521 kb on + strandat 564.522 kb on - strandat 564.611 kb on + strand, within ABZR87_RS02655at 564.611 kb on + strand, within ABZR87_RS02655at 564.612 kb on - strand, within ABZR87_RS02655at 564.612 kb on - strand, within ABZR87_RS02655at 564.612 kb on - strand, within ABZR87_RS02655at 564.612 kb on - strand, within ABZR87_RS02655at 564.764 kb on + strand, within ABZR87_RS02655at 564.764 kb on + strand, within ABZR87_RS02655at 564.765 kb on - strand, within ABZR87_RS02655at 564.765 kb on - strand, within ABZR87_RS02655at 565.256 kb on + strand, within ABZR87_RS02655at 565.256 kb on + strand, within ABZR87_RS02655at 565.256 kb on + strand, within ABZR87_RS02655at 565.256 kb on + strand, within ABZR87_RS02655at 565.256 kb on + strand, within ABZR87_RS02655at 565.256 kb on + strand, within ABZR87_RS02655at 565.256 kb on + strand, within ABZR87_RS02655at 565.256 kb on + strand, within ABZR87_RS02655at 565.256 kb on + strand, within ABZR87_RS02655at 565.256 kb on + strand, within ABZR87_RS02655at 565.257 kb on - strand, within ABZR87_RS02655at 565.257 kb on - strand, within ABZR87_RS02655at 565.257 kb on - strand, within ABZR87_RS02655at 565.257 kb on - strand, within ABZR87_RS02655at 565.304 kb on + strandat 565.304 kb on + strandat 565.304 kb on + strandat 565.304 kb on + strandat 565.304 kb on + strandat 565.304 kb on + strandat 565.305 kb on - strandat 565.323 kb on + strandat 565.323 kb on + strandat 565.324 kb on - strandat 565.324 kb on - strandat 565.520 kb on - strand, within ABZR87_RS02660at 565.520 kb on - strand, within ABZR87_RS02660at 565.551 kb on + strand, within ABZR87_RS02660at 565.551 kb on + strand, within ABZR87_RS02660at 565.552 kb on - strand, within ABZR87_RS02660at 565.552 kb on - strand, within ABZR87_RS02660at 565.934 kb on + strandat 565.934 kb on + strandat 565.934 kb on + strandat 565.934 kb on + strandat 565.935 kb on - strandat 565.935 kb on - strandat 565.935 kb on - strandat 565.935 kb on - strandat 565.961 kb on + strandat 565.961 kb on + strandat 566.039 kb on + strand, within ABZR87_RS02665at 566.039 kb on + strand, within ABZR87_RS02665at 566.040 kb on - strand, within ABZR87_RS02665at 566.040 kb on - strand, within ABZR87_RS02665at 566.099 kb on + strand, within ABZR87_RS02665at 566.100 kb on - strand, within ABZR87_RS02665at 566.100 kb on - strand, within ABZR87_RS02665at 566.207 kb on + strand, within ABZR87_RS02665at 566.207 kb on + strand, within ABZR87_RS02665at 566.207 kb on + strand, within ABZR87_RS02665at 566.208 kb on - strand, within ABZR87_RS02665at 566.208 kb on - strand, within ABZR87_RS02665at 566.208 kb on - strand, within ABZR87_RS02665at 566.208 kb on - strand, within ABZR87_RS02665at 566.208 kb on - strand, within ABZR87_RS02665at 566.208 kb on - strand, within ABZR87_RS02665at 566.439 kb on + strandat 566.439 kb on + strandat 566.460 kb on + strandat 566.460 kb on + strandat 566.461 kb on - strandat 566.498 kb on + strandat 566.498 kb on + strandat 566.498 kb on + strandat 566.499 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ra1_0.1
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564,480 - -0.5
564,480 - +0.7
564,480 - +1.1
564,486 - -0.9
564,521 + +0.1
564,522 - -1.7
564,611 + ABZR87_RS02655 0.15 -0.1
564,611 + ABZR87_RS02655 0.15 -0.4
564,612 - ABZR87_RS02655 0.15 +1.3
564,612 - ABZR87_RS02655 0.15 +0.4
564,612 - ABZR87_RS02655 0.15 -0.5
564,612 - ABZR87_RS02655 0.15 +0.4
564,764 + ABZR87_RS02655 0.33 -0.5
564,764 + ABZR87_RS02655 0.33 +0.3
564,765 - ABZR87_RS02655 0.33 -2.2
564,765 - ABZR87_RS02655 0.33 -0.7
565,256 + ABZR87_RS02655 0.90 +1.1
565,256 + ABZR87_RS02655 0.90 +0.5
565,256 + ABZR87_RS02655 0.90 +0.3
565,256 + ABZR87_RS02655 0.90 -0.2
565,256 + ABZR87_RS02655 0.90 +0.3
565,256 + ABZR87_RS02655 0.90 +0.6
565,256 + ABZR87_RS02655 0.90 +0.7
565,256 + ABZR87_RS02655 0.90 +0.3
565,256 + ABZR87_RS02655 0.90 -0.0
565,256 + ABZR87_RS02655 0.90 -0.1
565,257 - ABZR87_RS02655 0.90 +0.1
565,257 - ABZR87_RS02655 0.90 +1.1
565,257 - ABZR87_RS02655 0.90 +0.5
565,257 - ABZR87_RS02655 0.90 +1.7
565,304 + -0.2
565,304 + -1.4
565,304 + -0.7
565,304 + -0.6
565,304 + -0.6
565,304 + -0.7
565,305 - +2.7
565,323 + -0.5
565,323 + -0.7
565,324 - -1.1
565,324 - +0.7
565,520 - ABZR87_RS02660 0.29 -0.8
565,520 - ABZR87_RS02660 0.29 -0.6
565,551 + ABZR87_RS02660 0.34 -0.6
565,551 + ABZR87_RS02660 0.34 -2.4
565,552 - ABZR87_RS02660 0.34 -0.7
565,552 - ABZR87_RS02660 0.34 -1.8
565,934 + -1.1
565,934 + +0.7
565,934 + -0.2
565,934 + +0.9
565,935 - -0.0
565,935 - +0.0
565,935 - +0.3
565,935 - +0.4
565,961 + -0.8
565,961 + +0.7
566,039 + ABZR87_RS02665 0.18 +0.8
566,039 + ABZR87_RS02665 0.18 +0.4
566,040 - ABZR87_RS02665 0.19 +1.4
566,040 - ABZR87_RS02665 0.19 +0.4
566,099 + ABZR87_RS02665 0.32 +0.3
566,100 - ABZR87_RS02665 0.33 +1.7
566,100 - ABZR87_RS02665 0.33 +0.9
566,207 + ABZR87_RS02665 0.58 -0.9
566,207 + ABZR87_RS02665 0.58 +0.7
566,207 + ABZR87_RS02665 0.58 -0.3
566,208 - ABZR87_RS02665 0.58 +1.3
566,208 - ABZR87_RS02665 0.58 -0.8
566,208 - ABZR87_RS02665 0.58 -1.1
566,208 - ABZR87_RS02665 0.58 -1.8
566,208 - ABZR87_RS02665 0.58 +0.2
566,208 - ABZR87_RS02665 0.58 -0.7
566,439 + -0.1
566,439 + -0.0
566,460 + -0.0
566,460 + -1.1
566,461 - +0.3
566,498 + -0.3
566,498 + +1.3
566,498 + +0.5
566,499 - -0.8

Or see this region's nucleotide sequence