Experiment: Ra1_0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS02525 and ABZR87_RS02530 are separated by 251 nucleotides ABZR87_RS02530 and ABZR87_RS02535 are separated by 74 nucleotides ABZR87_RS02535 and ABZR87_RS02540 are separated by 152 nucleotides ABZR87_RS02540 and ABZR87_RS02545 are separated by 3 nucleotides
ABZR87_RS02525: ABZR87_RS02525 - ABC transporter ATP-binding protein, at 534,370 to 535,335
_RS02525
ABZR87_RS02530: ABZR87_RS02530 - STAS domain-containing protein, at 535,587 to 535,898
_RS02530
ABZR87_RS02535: ABZR87_RS02535 - phospholipid-binding protein MlaC, at 535,973 to 536,608
_RS02535
ABZR87_RS02540: ABZR87_RS02540 - VacJ family lipoprotein, at 536,761 to 537,564
_RS02540
ABZR87_RS02545: ABZR87_RS02545 - outer membrane lipid asymmetry maintenance protein MlaD, at 537,568 to 538,089
_RS02545
Position (kb) 535
536
537 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 535.029 kb on - strand, within ABZR87_RS02525 at 535.029 kb on - strand, within ABZR87_RS02525 at 535.299 kb on - strand at 535.299 kb on - strand at 535.299 kb on - strand at 535.442 kb on - strand at 535.442 kb on - strand at 535.442 kb on - strand at 535.442 kb on - strand at 535.442 kb on - strand at 535.443 kb on + strand at 535.652 kb on - strand, within ABZR87_RS02530 at 535.960 kb on - strand at 535.974 kb on + strand at 535.975 kb on - strand at 535.975 kb on - strand at 535.975 kb on - strand at 536.079 kb on + strand, within ABZR87_RS02535 at 536.079 kb on + strand, within ABZR87_RS02535 at 536.080 kb on - strand, within ABZR87_RS02535 at 536.118 kb on + strand, within ABZR87_RS02535 at 536.118 kb on + strand, within ABZR87_RS02535 at 536.118 kb on + strand, within ABZR87_RS02535 at 536.118 kb on + strand, within ABZR87_RS02535 at 536.118 kb on + strand, within ABZR87_RS02535 at 536.118 kb on + strand, within ABZR87_RS02535 at 536.119 kb on - strand, within ABZR87_RS02535 at 536.119 kb on - strand, within ABZR87_RS02535 at 536.119 kb on - strand, within ABZR87_RS02535 at 536.119 kb on - strand, within ABZR87_RS02535 at 536.119 kb on - strand, within ABZR87_RS02535 at 536.241 kb on + strand, within ABZR87_RS02535 at 536.241 kb on + strand, within ABZR87_RS02535 at 536.242 kb on - strand, within ABZR87_RS02535 at 536.242 kb on - strand, within ABZR87_RS02535 at 536.283 kb on + strand, within ABZR87_RS02535 at 536.283 kb on - strand, within ABZR87_RS02535 at 536.284 kb on - strand, within ABZR87_RS02535 at 536.284 kb on - strand, within ABZR87_RS02535 at 536.576 kb on + strand at 536.577 kb on - strand at 536.608 kb on + strand at 536.609 kb on - strand at 536.609 kb on - strand at 536.609 kb on - strand at 536.619 kb on + strand at 536.619 kb on + strand at 536.619 kb on + strand at 536.619 kb on + strand at 536.620 kb on - strand at 536.621 kb on + strand at 536.621 kb on + strand at 536.621 kb on + strand at 536.622 kb on - strand at 536.622 kb on - strand at 536.674 kb on + strand at 536.674 kb on + strand at 536.675 kb on - strand at 536.675 kb on - strand at 536.675 kb on - strand at 536.719 kb on + strand at 536.719 kb on + strand at 536.720 kb on - strand at 536.749 kb on + strand at 536.749 kb on + strand at 536.749 kb on + strand at 536.749 kb on + strand at 536.749 kb on + strand at 536.749 kb on + strand at 536.749 kb on + strand at 536.749 kb on + strand at 536.749 kb on + strand at 536.749 kb on + strand at 536.749 kb on + strand at 536.750 kb on - strand at 536.750 kb on - strand at 536.750 kb on - strand at 536.750 kb on - strand at 536.750 kb on - strand at 536.773 kb on + strand at 536.774 kb on - strand at 536.801 kb on + strand at 536.802 kb on - strand at 536.802 kb on - strand at 536.873 kb on + strand, within ABZR87_RS02540 at 536.873 kb on + strand, within ABZR87_RS02540 at 536.874 kb on - strand, within ABZR87_RS02540 at 536.882 kb on + strand, within ABZR87_RS02540 at 536.883 kb on - strand, within ABZR87_RS02540 at 536.900 kb on + strand, within ABZR87_RS02540 at 536.921 kb on + strand, within ABZR87_RS02540 at 536.922 kb on - strand, within ABZR87_RS02540 at 536.922 kb on - strand, within ABZR87_RS02540 at 536.922 kb on - strand, within ABZR87_RS02540 at 536.922 kb on - strand, within ABZR87_RS02540 at 536.922 kb on - strand, within ABZR87_RS02540 at 536.922 kb on - strand, within ABZR87_RS02540 at 536.922 kb on - strand, within ABZR87_RS02540 at 536.922 kb on - strand, within ABZR87_RS02540 at 537.008 kb on + strand, within ABZR87_RS02540 at 537.008 kb on + strand, within ABZR87_RS02540 at 537.009 kb on - strand, within ABZR87_RS02540 at 537.032 kb on + strand, within ABZR87_RS02540 at 537.032 kb on + strand, within ABZR87_RS02540 at 537.032 kb on + strand, within ABZR87_RS02540 at 537.033 kb on - strand, within ABZR87_RS02540 at 537.033 kb on - strand, within ABZR87_RS02540 at 537.033 kb on - strand, within ABZR87_RS02540 at 537.033 kb on - strand, within ABZR87_RS02540 at 537.116 kb on + strand, within ABZR87_RS02540 at 537.116 kb on + strand, within ABZR87_RS02540 at 537.117 kb on - strand, within ABZR87_RS02540 at 537.117 kb on - strand, within ABZR87_RS02540 at 537.117 kb on - strand, within ABZR87_RS02540 at 537.117 kb on - strand, within ABZR87_RS02540 at 537.302 kb on + strand, within ABZR87_RS02540 at 537.303 kb on - strand, within ABZR87_RS02540 at 537.371 kb on + strand, within ABZR87_RS02540 at 537.371 kb on + strand, within ABZR87_RS02540 at 537.371 kb on + strand, within ABZR87_RS02540 at 537.371 kb on + strand, within ABZR87_RS02540 at 537.371 kb on + strand, within ABZR87_RS02540 at 537.372 kb on - strand, within ABZR87_RS02540 at 537.372 kb on - strand, within ABZR87_RS02540 at 537.372 kb on - strand, within ABZR87_RS02540 at 537.372 kb on - strand, within ABZR87_RS02540 at 537.372 kb on - strand, within ABZR87_RS02540 at 537.372 kb on - strand, within ABZR87_RS02540 at 537.540 kb on + strand at 537.540 kb on + strand at 537.541 kb on - strand at 537.541 kb on - strand at 537.546 kb on + strand at 537.546 kb on + strand at 537.546 kb on + strand at 537.547 kb on - strand at 537.570 kb on - strand at 537.570 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ra1_0.1 remove 535,029 - ABZR87_RS02525 0.68 -0.7 535,029 - ABZR87_RS02525 0.68 +1.5 535,299 - +0.1 535,299 - +0.3 535,299 - -1.6 535,442 - -0.5 535,442 - +0.3 535,442 - -0.1 535,442 - -0.3 535,442 - +0.3 535,443 + +1.4 535,652 - ABZR87_RS02530 0.21 +1.7 535,960 - -0.7 535,974 + -0.2 535,975 - +0.7 535,975 - -1.0 535,975 - +0.1 536,079 + ABZR87_RS02535 0.17 -0.1 536,079 + ABZR87_RS02535 0.17 -0.7 536,080 - ABZR87_RS02535 0.17 -0.8 536,118 + ABZR87_RS02535 0.23 -1.5 536,118 + ABZR87_RS02535 0.23 +1.1 536,118 + ABZR87_RS02535 0.23 +0.3 536,118 + ABZR87_RS02535 0.23 +1.1 536,118 + ABZR87_RS02535 0.23 -2.7 536,118 + ABZR87_RS02535 0.23 +1.7 536,119 - ABZR87_RS02535 0.23 +1.1 536,119 - ABZR87_RS02535 0.23 -0.7 536,119 - ABZR87_RS02535 0.23 -0.8 536,119 - ABZR87_RS02535 0.23 -2.1 536,119 - ABZR87_RS02535 0.23 -2.6 536,241 + ABZR87_RS02535 0.42 -2.0 536,241 + ABZR87_RS02535 0.42 -0.8 536,242 - ABZR87_RS02535 0.42 -1.7 536,242 - ABZR87_RS02535 0.42 -0.3 536,283 + ABZR87_RS02535 0.49 -1.7 536,283 - ABZR87_RS02535 0.49 -2.8 536,284 - ABZR87_RS02535 0.49 -1.9 536,284 - ABZR87_RS02535 0.49 -2.7 536,576 + -2.6 536,577 - -1.6 536,608 + -1.8 536,609 - -0.8 536,609 - -1.2 536,609 - -0.7 536,619 + -2.5 536,619 + -3.0 536,619 + -0.8 536,619 + -1.4 536,620 - -2.4 536,621 + -0.1 536,621 + -0.3 536,621 + -1.6 536,622 - -1.5 536,622 - -0.4 536,674 + -0.7 536,674 + -3.3 536,675 - -2.4 536,675 - +0.3 536,675 - -0.2 536,719 + -0.9 536,719 + -2.1 536,720 - +0.1 536,749 + -2.2 536,749 + -1.1 536,749 + -1.0 536,749 + -0.7 536,749 + -0.8 536,749 + -1.1 536,749 + -2.2 536,749 + -0.5 536,749 + +1.3 536,749 + -0.9 536,749 + -0.5 536,750 - -1.4 536,750 - +0.5 536,750 - -0.5 536,750 - -0.8 536,750 - +0.5 536,773 + -0.8 536,774 - -0.5 536,801 + +3.7 536,802 - -0.2 536,802 - +0.8 536,873 + ABZR87_RS02540 0.14 -1.5 536,873 + ABZR87_RS02540 0.14 -0.5 536,874 - ABZR87_RS02540 0.14 -1.0 536,882 + ABZR87_RS02540 0.15 -2.3 536,883 - ABZR87_RS02540 0.15 -0.8 536,900 + ABZR87_RS02540 0.17 -1.9 536,921 + ABZR87_RS02540 0.20 +0.7 536,922 - ABZR87_RS02540 0.20 +0.3 536,922 - ABZR87_RS02540 0.20 -1.3 536,922 - ABZR87_RS02540 0.20 -2.2 536,922 - ABZR87_RS02540 0.20 -0.1 536,922 - ABZR87_RS02540 0.20 -0.1 536,922 - ABZR87_RS02540 0.20 -1.1 536,922 - ABZR87_RS02540 0.20 +0.7 536,922 - ABZR87_RS02540 0.20 -0.5 537,008 + ABZR87_RS02540 0.31 +2.7 537,008 + ABZR87_RS02540 0.31 -0.7 537,009 - ABZR87_RS02540 0.31 -0.8 537,032 + ABZR87_RS02540 0.34 -1.5 537,032 + ABZR87_RS02540 0.34 -0.8 537,032 + ABZR87_RS02540 0.34 -1.3 537,033 - ABZR87_RS02540 0.34 -0.2 537,033 - ABZR87_RS02540 0.34 -1.7 537,033 - ABZR87_RS02540 0.34 -1.9 537,033 - ABZR87_RS02540 0.34 -0.9 537,116 + ABZR87_RS02540 0.44 -0.8 537,116 + ABZR87_RS02540 0.44 -0.5 537,117 - ABZR87_RS02540 0.44 +1.1 537,117 - ABZR87_RS02540 0.44 +0.1 537,117 - ABZR87_RS02540 0.44 +0.7 537,117 - ABZR87_RS02540 0.44 +0.5 537,302 + ABZR87_RS02540 0.67 -1.2 537,303 - ABZR87_RS02540 0.67 -2.2 537,371 + ABZR87_RS02540 0.76 -0.8 537,371 + ABZR87_RS02540 0.76 -1.7 537,371 + ABZR87_RS02540 0.76 +0.3 537,371 + ABZR87_RS02540 0.76 -1.9 537,371 + ABZR87_RS02540 0.76 +0.1 537,372 - ABZR87_RS02540 0.76 -0.2 537,372 - ABZR87_RS02540 0.76 -1.2 537,372 - ABZR87_RS02540 0.76 -1.4 537,372 - ABZR87_RS02540 0.76 -1.1 537,372 - ABZR87_RS02540 0.76 +0.1 537,372 - ABZR87_RS02540 0.76 -1.2 537,540 + -2.0 537,540 + +0.2 537,541 - +0.7 537,541 - -3.0 537,546 + -0.7 537,546 + -0.5 537,546 + -1.0 537,547 - -1.0 537,570 - -0.8 537,570 - -0.6
Or see this region's nucleotide sequence