Experiment: Ra1_0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS02390 and ABZR87_RS02395 are separated by 12 nucleotides ABZR87_RS02395 and ABZR87_RS02400 are separated by 19 nucleotides ABZR87_RS02400 and ABZR87_RS02405 are separated by 420 nucleotides
ABZR87_RS02390: ABZR87_RS02390 - large conductance mechanosensitive channel protein MscL, at 510,229 to 510,657
_RS02390
ABZR87_RS02395: ABZR87_RS02395 - Nif3-like dinuclear metal center hexameric protein, at 510,670 to 511,416
_RS02395
ABZR87_RS02400: ABZR87_RS02400 - Do family serine endopeptidase, at 511,436 to 512,650
_RS02400
ABZR87_RS02405: ABZR87_RS02405 - porin, at 513,071 to 514,177
_RS02405
Position (kb) 511
512
513 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 510.438 kb on + strand, within ABZR87_RS02390 at 510.438 kb on + strand, within ABZR87_RS02390 at 510.438 kb on + strand, within ABZR87_RS02390 at 510.438 kb on + strand, within ABZR87_RS02390 at 510.438 kb on + strand, within ABZR87_RS02390 at 510.438 kb on + strand, within ABZR87_RS02390 at 510.438 kb on + strand, within ABZR87_RS02390 at 510.438 kb on + strand, within ABZR87_RS02390 at 510.439 kb on - strand, within ABZR87_RS02390 at 510.439 kb on - strand, within ABZR87_RS02390 at 510.439 kb on - strand, within ABZR87_RS02390 at 510.439 kb on - strand, within ABZR87_RS02390 at 510.439 kb on - strand, within ABZR87_RS02390 at 510.439 kb on - strand, within ABZR87_RS02390 at 510.439 kb on - strand, within ABZR87_RS02390 at 510.439 kb on - strand, within ABZR87_RS02390 at 510.528 kb on + strand, within ABZR87_RS02390 at 510.529 kb on - strand, within ABZR87_RS02390 at 510.655 kb on + strand at 510.656 kb on - strand at 510.656 kb on - strand at 510.656 kb on - strand at 510.706 kb on + strand at 510.706 kb on + strand at 510.706 kb on + strand at 510.706 kb on + strand at 510.706 kb on + strand at 510.707 kb on - strand at 510.707 kb on - strand at 510.707 kb on - strand at 510.707 kb on - strand at 510.785 kb on + strand, within ABZR87_RS02395 at 510.785 kb on + strand, within ABZR87_RS02395 at 510.785 kb on + strand, within ABZR87_RS02395 at 510.785 kb on + strand, within ABZR87_RS02395 at 510.785 kb on + strand, within ABZR87_RS02395 at 510.785 kb on + strand, within ABZR87_RS02395 at 510.786 kb on - strand, within ABZR87_RS02395 at 510.786 kb on - strand, within ABZR87_RS02395 at 510.786 kb on - strand, within ABZR87_RS02395 at 510.786 kb on - strand, within ABZR87_RS02395 at 510.786 kb on - strand, within ABZR87_RS02395 at 510.786 kb on - strand, within ABZR87_RS02395 at 510.786 kb on - strand, within ABZR87_RS02395 at 510.845 kb on + strand, within ABZR87_RS02395 at 510.845 kb on + strand, within ABZR87_RS02395 at 510.845 kb on + strand, within ABZR87_RS02395 at 510.846 kb on - strand, within ABZR87_RS02395 at 510.846 kb on - strand, within ABZR87_RS02395 at 510.846 kb on - strand, within ABZR87_RS02395 at 510.846 kb on - strand, within ABZR87_RS02395 at 510.846 kb on - strand, within ABZR87_RS02395 at 510.846 kb on - strand, within ABZR87_RS02395 at 510.846 kb on - strand, within ABZR87_RS02395 at 510.846 kb on - strand, within ABZR87_RS02395 at 510.846 kb on - strand, within ABZR87_RS02395 at 510.846 kb on - strand, within ABZR87_RS02395 at 510.995 kb on - strand, within ABZR87_RS02395 at 510.995 kb on - strand, within ABZR87_RS02395 at 510.995 kb on - strand, within ABZR87_RS02395 at 511.131 kb on - strand, within ABZR87_RS02395 at 511.220 kb on + strand, within ABZR87_RS02395 at 511.220 kb on + strand, within ABZR87_RS02395 at 511.220 kb on + strand, within ABZR87_RS02395 at 511.220 kb on + strand, within ABZR87_RS02395 at 511.221 kb on - strand, within ABZR87_RS02395 at 511.221 kb on - strand, within ABZR87_RS02395 at 511.221 kb on - strand, within ABZR87_RS02395 at 511.221 kb on - strand, within ABZR87_RS02395 at 511.311 kb on + strand, within ABZR87_RS02395 at 511.312 kb on - strand, within ABZR87_RS02395 at 511.312 kb on - strand, within ABZR87_RS02395 at 511.336 kb on + strand, within ABZR87_RS02395 at 511.336 kb on + strand, within ABZR87_RS02395 at 511.337 kb on - strand, within ABZR87_RS02395 at 511.337 kb on - strand, within ABZR87_RS02395 at 511.337 kb on - strand, within ABZR87_RS02395 at 511.352 kb on + strand at 511.352 kb on + strand at 511.352 kb on + strand at 511.352 kb on + strand at 511.353 kb on - strand at 511.353 kb on - strand at 511.353 kb on - strand at 511.353 kb on - strand at 511.391 kb on + strand at 511.391 kb on + strand at 511.435 kb on + strand at 511.435 kb on + strand at 511.435 kb on + strand at 511.436 kb on - strand at 511.436 kb on - strand at 511.436 kb on - strand at 511.436 kb on - strand at 511.436 kb on - strand at 511.622 kb on + strand, within ABZR87_RS02400 at 511.623 kb on - strand, within ABZR87_RS02400 at 511.623 kb on - strand, within ABZR87_RS02400 at 511.824 kb on + strand, within ABZR87_RS02400 at 511.824 kb on + strand, within ABZR87_RS02400 at 511.824 kb on + strand, within ABZR87_RS02400 at 511.824 kb on + strand, within ABZR87_RS02400 at 511.825 kb on - strand, within ABZR87_RS02400 at 511.825 kb on - strand, within ABZR87_RS02400 at 511.969 kb on + strand, within ABZR87_RS02400 at 511.970 kb on - strand, within ABZR87_RS02400 at 511.970 kb on - strand, within ABZR87_RS02400 at 511.970 kb on - strand, within ABZR87_RS02400 at 512.204 kb on + strand, within ABZR87_RS02400 at 512.204 kb on + strand, within ABZR87_RS02400 at 512.204 kb on + strand, within ABZR87_RS02400 at 512.204 kb on + strand, within ABZR87_RS02400 at 512.204 kb on + strand, within ABZR87_RS02400 at 512.281 kb on + strand, within ABZR87_RS02400 at 512.281 kb on + strand, within ABZR87_RS02400 at 512.281 kb on + strand, within ABZR87_RS02400 at 512.281 kb on + strand, within ABZR87_RS02400 at 512.281 kb on + strand, within ABZR87_RS02400 at 512.282 kb on - strand, within ABZR87_RS02400 at 512.480 kb on - strand, within ABZR87_RS02400 at 512.490 kb on + strand, within ABZR87_RS02400 at 512.491 kb on - strand, within ABZR87_RS02400 at 512.599 kb on + strand at 512.648 kb on + strand at 512.648 kb on + strand at 512.649 kb on - strand at 512.649 kb on - strand at 512.649 kb on - strand at 512.667 kb on + strand at 512.701 kb on + strand at 512.792 kb on + strand at 512.793 kb on - strand at 512.807 kb on + strand at 512.807 kb on + strand at 512.808 kb on - strand at 512.808 kb on - strand at 512.808 kb on - strand at 512.811 kb on + strand at 512.811 kb on + strand at 512.811 kb on + strand at 512.811 kb on + strand at 512.812 kb on - strand at 512.812 kb on - strand at 512.812 kb on - strand at 512.821 kb on + strand at 512.858 kb on + strand at 512.858 kb on + strand at 512.858 kb on + strand at 512.858 kb on + strand at 512.859 kb on - strand at 512.859 kb on - strand at 512.859 kb on - strand at 512.859 kb on - strand at 512.859 kb on - strand at 512.859 kb on - strand at 512.859 kb on - strand at 512.870 kb on - strand at 512.870 kb on - strand at 512.905 kb on + strand at 512.905 kb on + strand at 512.905 kb on + strand at 512.906 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ra1_0.1 remove 510,438 + ABZR87_RS02390 0.49 -0.6 510,438 + ABZR87_RS02390 0.49 -0.2 510,438 + ABZR87_RS02390 0.49 -0.2 510,438 + ABZR87_RS02390 0.49 -0.2 510,438 + ABZR87_RS02390 0.49 -0.1 510,438 + ABZR87_RS02390 0.49 -0.5 510,438 + ABZR87_RS02390 0.49 +0.5 510,438 + ABZR87_RS02390 0.49 -0.1 510,439 - ABZR87_RS02390 0.49 -0.3 510,439 - ABZR87_RS02390 0.49 -0.2 510,439 - ABZR87_RS02390 0.49 +0.0 510,439 - ABZR87_RS02390 0.49 -0.1 510,439 - ABZR87_RS02390 0.49 +0.2 510,439 - ABZR87_RS02390 0.49 -0.4 510,439 - ABZR87_RS02390 0.49 -0.6 510,439 - ABZR87_RS02390 0.49 -0.2 510,528 + ABZR87_RS02390 0.70 -0.6 510,529 - ABZR87_RS02390 0.70 -0.2 510,655 + +0.0 510,656 - +0.1 510,656 - +0.8 510,656 - +1.0 510,706 + -1.0 510,706 + +0.2 510,706 + -0.7 510,706 + -0.2 510,706 + -0.1 510,707 - -0.7 510,707 - -1.2 510,707 - -0.3 510,707 - -0.3 510,785 + ABZR87_RS02395 0.15 +0.7 510,785 + ABZR87_RS02395 0.15 +0.4 510,785 + ABZR87_RS02395 0.15 -1.0 510,785 + ABZR87_RS02395 0.15 +2.1 510,785 + ABZR87_RS02395 0.15 +0.4 510,785 + ABZR87_RS02395 0.15 +0.7 510,786 - ABZR87_RS02395 0.16 -0.7 510,786 - ABZR87_RS02395 0.16 +0.2 510,786 - ABZR87_RS02395 0.16 -1.6 510,786 - ABZR87_RS02395 0.16 -0.0 510,786 - ABZR87_RS02395 0.16 -0.3 510,786 - ABZR87_RS02395 0.16 +0.2 510,786 - ABZR87_RS02395 0.16 -0.1 510,845 + ABZR87_RS02395 0.23 -1.0 510,845 + ABZR87_RS02395 0.23 +1.7 510,845 + ABZR87_RS02395 0.23 +0.6 510,846 - ABZR87_RS02395 0.24 -1.8 510,846 - ABZR87_RS02395 0.24 -0.7 510,846 - ABZR87_RS02395 0.24 -0.7 510,846 - ABZR87_RS02395 0.24 +0.6 510,846 - ABZR87_RS02395 0.24 +0.3 510,846 - ABZR87_RS02395 0.24 -0.0 510,846 - ABZR87_RS02395 0.24 -1.6 510,846 - ABZR87_RS02395 0.24 +0.1 510,846 - ABZR87_RS02395 0.24 +0.1 510,846 - ABZR87_RS02395 0.24 -0.3 510,995 - ABZR87_RS02395 0.44 -2.8 510,995 - ABZR87_RS02395 0.44 -0.4 510,995 - ABZR87_RS02395 0.44 -0.3 511,131 - ABZR87_RS02395 0.62 -0.4 511,220 + ABZR87_RS02395 0.74 -0.8 511,220 + ABZR87_RS02395 0.74 +0.1 511,220 + ABZR87_RS02395 0.74 +0.8 511,220 + ABZR87_RS02395 0.74 -1.5 511,221 - ABZR87_RS02395 0.74 -0.9 511,221 - ABZR87_RS02395 0.74 -0.1 511,221 - ABZR87_RS02395 0.74 -1.0 511,221 - ABZR87_RS02395 0.74 +0.2 511,311 + ABZR87_RS02395 0.86 +1.1 511,312 - ABZR87_RS02395 0.86 -0.6 511,312 - ABZR87_RS02395 0.86 -3.3 511,336 + ABZR87_RS02395 0.89 -0.1 511,336 + ABZR87_RS02395 0.89 -0.2 511,337 - ABZR87_RS02395 0.89 -1.7 511,337 - ABZR87_RS02395 0.89 -0.3 511,337 - ABZR87_RS02395 0.89 -2.0 511,352 + +0.4 511,352 + +1.2 511,352 + -0.3 511,352 + -0.1 511,353 - +0.1 511,353 - +0.1 511,353 - -1.0 511,353 - -1.3 511,391 + +0.8 511,391 + +0.6 511,435 + -1.2 511,435 + -1.1 511,435 + -1.2 511,436 - -2.5 511,436 - -1.3 511,436 - -1.0 511,436 - -1.1 511,436 - -1.7 511,622 + ABZR87_RS02400 0.15 -1.8 511,623 - ABZR87_RS02400 0.15 -1.3 511,623 - ABZR87_RS02400 0.15 -1.1 511,824 + ABZR87_RS02400 0.32 -0.0 511,824 + ABZR87_RS02400 0.32 +0.3 511,824 + ABZR87_RS02400 0.32 -3.1 511,824 + ABZR87_RS02400 0.32 -2.0 511,825 - ABZR87_RS02400 0.32 -0.7 511,825 - ABZR87_RS02400 0.32 -0.8 511,969 + ABZR87_RS02400 0.44 -2.2 511,970 - ABZR87_RS02400 0.44 -2.0 511,970 - ABZR87_RS02400 0.44 -1.7 511,970 - ABZR87_RS02400 0.44 -0.2 512,204 + ABZR87_RS02400 0.63 -1.1 512,204 + ABZR87_RS02400 0.63 -0.8 512,204 + ABZR87_RS02400 0.63 -3.0 512,204 + ABZR87_RS02400 0.63 -1.3 512,204 + ABZR87_RS02400 0.63 -0.5 512,281 + ABZR87_RS02400 0.70 -1.8 512,281 + ABZR87_RS02400 0.70 +0.3 512,281 + ABZR87_RS02400 0.70 -2.6 512,281 + ABZR87_RS02400 0.70 -0.5 512,281 + ABZR87_RS02400 0.70 -1.7 512,282 - ABZR87_RS02400 0.70 +0.1 512,480 - ABZR87_RS02400 0.86 -1.8 512,490 + ABZR87_RS02400 0.87 -0.6 512,491 - ABZR87_RS02400 0.87 -2.3 512,599 + +1.2 512,648 + -0.3 512,648 + +1.0 512,649 - -0.4 512,649 - +0.2 512,649 - +0.2 512,667 + -0.0 512,701 + +1.8 512,792 + +0.0 512,793 - +0.2 512,807 + +0.2 512,807 + -1.5 512,808 - -1.5 512,808 - -0.2 512,808 - +0.3 512,811 + -1.8 512,811 + +0.2 512,811 + -0.7 512,811 + -1.5 512,812 - +0.1 512,812 - -0.7 512,812 - +0.2 512,821 + +0.8 512,858 + +1.7 512,858 + -0.7 512,858 + -0.3 512,858 + -0.3 512,859 - +0.2 512,859 - -2.7 512,859 - -0.3 512,859 - -0.2 512,859 - -0.5 512,859 - -0.0 512,859 - +0.5 512,870 - -1.3 512,870 - -0.6 512,905 + -0.9 512,905 + -1.7 512,905 + -1.5 512,906 - -0.4
Or see this region's nucleotide sequence