Experiment: Ra1_0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS02160 and ABZR87_RS02165 are separated by 10 nucleotides ABZR87_RS02165 and ABZR87_RS02170 overlap by 4 nucleotides ABZR87_RS02170 and ABZR87_RS02175 are separated by 414 nucleotides
ABZR87_RS02160: ABZR87_RS02160 - indole-3-glycerol phosphate synthase TrpC, at 462,732 to 463,535
_RS02160
ABZR87_RS02165: ABZR87_RS02165 - CYTH domain-containing protein, at 463,546 to 464,205
_RS02165
ABZR87_RS02170: ABZR87_RS02170 - uracil-DNA glycosylase, at 464,202 to 464,993
_RS02170
ABZR87_RS02175: ABZR87_RS02175 - FUSC family protein, at 465,408 to 467,624
_RS02175
Position (kb) 464
465 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 463.577 kb on + strand at 463.661 kb on - strand, within ABZR87_RS02165 at 463.661 kb on - strand, within ABZR87_RS02165 at 463.661 kb on - strand, within ABZR87_RS02165 at 463.661 kb on - strand, within ABZR87_RS02165 at 463.663 kb on + strand, within ABZR87_RS02165 at 463.663 kb on + strand, within ABZR87_RS02165 at 463.664 kb on - strand, within ABZR87_RS02165 at 463.764 kb on + strand, within ABZR87_RS02165 at 463.764 kb on + strand, within ABZR87_RS02165 at 463.765 kb on - strand, within ABZR87_RS02165 at 463.765 kb on - strand, within ABZR87_RS02165 at 463.867 kb on + strand, within ABZR87_RS02165 at 463.867 kb on + strand, within ABZR87_RS02165 at 463.867 kb on + strand, within ABZR87_RS02165 at 463.867 kb on + strand, within ABZR87_RS02165 at 463.868 kb on + strand, within ABZR87_RS02165 at 463.868 kb on - strand, within ABZR87_RS02165 at 463.868 kb on - strand, within ABZR87_RS02165 at 463.868 kb on - strand, within ABZR87_RS02165 at 465.324 kb on + strand at 465.325 kb on - strand at 465.409 kb on + strand at 465.409 kb on + strand at 465.410 kb on - strand at 465.410 kb on - strand at 465.410 kb on - strand at 465.422 kb on + strand at 465.422 kb on + strand at 465.422 kb on + strand at 465.423 kb on - strand at 465.790 kb on + strand, within ABZR87_RS02175 at 465.790 kb on + strand, within ABZR87_RS02175 at 465.790 kb on + strand, within ABZR87_RS02175 at 465.791 kb on - strand, within ABZR87_RS02175 at 465.791 kb on - strand, within ABZR87_RS02175 at 465.791 kb on - strand, within ABZR87_RS02175 at 465.791 kb on - strand, within ABZR87_RS02175 at 465.791 kb on - strand, within ABZR87_RS02175 at 465.791 kb on - strand, within ABZR87_RS02175
Per-strain Table
Position Strand Gene LocusTag Fraction Ra1_0.1 remove 463,577 + +0.7 463,661 - ABZR87_RS02165 0.17 -1.6 463,661 - ABZR87_RS02165 0.17 -1.7 463,661 - ABZR87_RS02165 0.17 -0.7 463,661 - ABZR87_RS02165 0.17 +0.3 463,663 + ABZR87_RS02165 0.18 +1.0 463,663 + ABZR87_RS02165 0.18 +0.7 463,664 - ABZR87_RS02165 0.18 -2.0 463,764 + ABZR87_RS02165 0.33 -0.2 463,764 + ABZR87_RS02165 0.33 +1.1 463,765 - ABZR87_RS02165 0.33 +5.0 463,765 - ABZR87_RS02165 0.33 -0.9 463,867 + ABZR87_RS02165 0.49 -0.7 463,867 + ABZR87_RS02165 0.49 +0.1 463,867 + ABZR87_RS02165 0.49 -0.6 463,867 + ABZR87_RS02165 0.49 -0.2 463,868 + ABZR87_RS02165 0.49 -1.8 463,868 - ABZR87_RS02165 0.49 +0.7 463,868 - ABZR87_RS02165 0.49 +0.2 463,868 - ABZR87_RS02165 0.49 -0.2 465,324 + -1.0 465,325 - +0.7 465,409 + -0.9 465,409 + -0.3 465,410 - -1.2 465,410 - -0.4 465,410 - -1.7 465,422 + +1.0 465,422 + +1.7 465,422 + +0.3 465,423 - -0.0 465,790 + ABZR87_RS02175 0.17 +0.1 465,790 + ABZR87_RS02175 0.17 +1.2 465,790 + ABZR87_RS02175 0.17 +0.4 465,791 - ABZR87_RS02175 0.17 +0.5 465,791 - ABZR87_RS02175 0.17 -0.9 465,791 - ABZR87_RS02175 0.17 +0.5 465,791 - ABZR87_RS02175 0.17 -1.0 465,791 - ABZR87_RS02175 0.17 -0.8 465,791 - ABZR87_RS02175 0.17 -0.2
Or see this region's nucleotide sequence