Experiment: MoYLS4 with Nickel Chloride 0.75mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU1277 and tRNA-SeC(p) are separated by 156 nucleotides tRNA-SeC(p) and ftsH are separated by 389 nucleotides ftsH and folP overlap by 4 nucleotides folP and DVU1280 are separated by 8 nucleotides
DVU1277: DVU1277 - hypothetical protein (TIGR), at 1,369,213 to 1,369,350
DVU1277
DVU_tRNA-SeC(p)-1: tRNA-SeC(p) - tRNA with anticodon TCA for SeC(p) (VIMSS-AUTO), at 1,369,507 to 1,369,596
tRNA-SeC(p)
DVU1278: ftsH - cell division protein FtsH (TIGR), at 1,369,986 to 1,371,956
ftsH
DVU1279: folP - dihydropteroate synthase (TIGR), at 1,371,953 to 1,372,813
folP
DVU1280: DVU1280 - conserved hypothetical protein TIGR00159 (TIGR), at 1,372,822 to 1,373,568
DVU1280
Position (kb)
1369
1370
1371
1372 Strain fitness (log2 ratio)
-2
-1
0
1 at 1369.039 kb on - strand at 1369.148 kb on - strand at 1369.263 kb on - strand, within DVU1277 at 1369.337 kb on + strand at 1369.443 kb on + strand at 1369.613 kb on - strand at 1369.659 kb on - strand at 1369.677 kb on + strand at 1369.696 kb on + strand at 1369.704 kb on - strand at 1369.830 kb on - strand at 1369.862 kb on + strand at 1371.911 kb on - strand at 1372.780 kb on - strand at 1372.780 kb on - strand at 1372.780 kb on - strand at 1372.780 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Nickel Chloride 0.75mM remove 1,369,039 - -1.1 1,369,148 - -0.1 1,369,263 - DVU1277 0.36 -1.9 1,369,337 + +0.4 1,369,443 + +0.1 1,369,613 - -0.1 1,369,659 - -0.1 1,369,677 + -0.7 1,369,696 + -0.6 1,369,704 - -0.5 1,369,830 - +0.4 1,369,862 + -0.6 1,371,911 - -0.9 1,372,780 - +0.8 1,372,780 - +0.1 1,372,780 - +0.1 1,372,780 - -0.1
Or see this region's nucleotide sequence