Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1278

Experiment: MoYLS4 with Nickel Chloride 0.75mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU1277 and tRNA-SeC(p) are separated by 156 nucleotidestRNA-SeC(p) and ftsH are separated by 389 nucleotidesftsH and folP overlap by 4 nucleotidesfolP and DVU1280 are separated by 8 nucleotides DVU1277: DVU1277 - hypothetical protein (TIGR), at 1,369,213 to 1,369,350 DVU1277 DVU_tRNA-SeC(p)-1: tRNA-SeC(p) - tRNA with anticodon TCA for SeC(p) (VIMSS-AUTO), at 1,369,507 to 1,369,596 tRNA-SeC(p) DVU1278: ftsH - cell division protein FtsH (TIGR), at 1,369,986 to 1,371,956 ftsH DVU1279: folP - dihydropteroate synthase (TIGR), at 1,371,953 to 1,372,813 folP DVU1280: DVU1280 - conserved hypothetical protein TIGR00159 (TIGR), at 1,372,822 to 1,373,568 DVU1280 Position (kb) 1369 1370 1371 1372Strain fitness (log2 ratio) -2 -1 0 1at 1369.039 kb on - strandat 1369.148 kb on - strandat 1369.263 kb on - strand, within DVU1277at 1369.337 kb on + strandat 1369.443 kb on + strandat 1369.613 kb on - strandat 1369.659 kb on - strandat 1369.677 kb on + strandat 1369.696 kb on + strandat 1369.704 kb on - strandat 1369.830 kb on - strandat 1369.862 kb on + strandat 1371.911 kb on - strandat 1372.780 kb on - strandat 1372.780 kb on - strandat 1372.780 kb on - strandat 1372.780 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Nickel Chloride 0.75mM
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1,369,039 - -1.1
1,369,148 - -0.1
1,369,263 - DVU1277 0.36 -1.9
1,369,337 + +0.4
1,369,443 + +0.1
1,369,613 - -0.1
1,369,659 - -0.1
1,369,677 + -0.7
1,369,696 + -0.6
1,369,704 - -0.5
1,369,830 - +0.4
1,369,862 + -0.6
1,371,911 - -0.9
1,372,780 - +0.8
1,372,780 - +0.1
1,372,780 - +0.1
1,372,780 - -0.1

Or see this region's nucleotide sequence