Experiment: KB with Quercetin 360 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4942 and Psyr_4943 are separated by 44 nucleotides Psyr_4943 and Psyr_4944 are separated by 149 nucleotides Psyr_4944 and Psyr_4945 are separated by 103 nucleotides Psyr_4945 and Psyr_4946 overlap by 4 nucleotides
Psyr_4942: Psyr_4942 - HAD-superfamily hydrolase, subfamily IA, variant 3, at 5,857,858 to 5,858,520
_4942
Psyr_4943: Psyr_4943 - Peptidoglycan-binding LysM:Transport-associated, at 5,858,565 to 5,859,005
_4943
Psyr_4944: Psyr_4944 - transcriptional regulator, LysR family, at 5,859,155 to 5,860,036
_4944
Psyr_4945: Psyr_4945 - Formate dehydrogenase, subunit FdhD, at 5,860,140 to 5,860,976
_4945
Psyr_4946: Psyr_4946 - Oxidoreductase alpha (molybdopterin) subunit, at 5,860,973 to 5,863,309
_4946
Position (kb) 5859
5860
5861 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 5858.257 kb on + strand, within Psyr_4942 at 5858.257 kb on + strand, within Psyr_4942 at 5858.414 kb on + strand, within Psyr_4942 at 5858.414 kb on + strand, within Psyr_4942 at 5858.415 kb on - strand, within Psyr_4942 at 5858.518 kb on + strand at 5858.518 kb on + strand at 5858.518 kb on + strand at 5858.519 kb on - strand at 5858.519 kb on - strand at 5858.519 kb on - strand at 5858.519 kb on - strand at 5858.519 kb on - strand at 5858.651 kb on - strand, within Psyr_4943 at 5858.668 kb on + strand, within Psyr_4943 at 5858.668 kb on + strand, within Psyr_4943 at 5858.684 kb on + strand, within Psyr_4943 at 5858.685 kb on - strand, within Psyr_4943 at 5858.719 kb on + strand, within Psyr_4943 at 5858.720 kb on - strand, within Psyr_4943 at 5858.909 kb on + strand, within Psyr_4943 at 5858.909 kb on + strand, within Psyr_4943 at 5858.909 kb on + strand, within Psyr_4943 at 5858.909 kb on + strand, within Psyr_4943 at 5858.909 kb on + strand, within Psyr_4943 at 5858.909 kb on + strand, within Psyr_4943 at 5858.909 kb on + strand, within Psyr_4943 at 5858.910 kb on - strand, within Psyr_4943 at 5858.910 kb on - strand, within Psyr_4943 at 5858.910 kb on - strand, within Psyr_4943 at 5858.996 kb on + strand at 5858.997 kb on - strand at 5859.020 kb on + strand at 5859.020 kb on + strand at 5859.021 kb on - strand at 5859.024 kb on + strand at 5859.024 kb on + strand at 5859.024 kb on + strand at 5859.024 kb on + strand at 5859.024 kb on + strand at 5859.024 kb on + strand at 5859.025 kb on - strand at 5859.025 kb on - strand at 5859.025 kb on - strand at 5859.025 kb on - strand at 5859.045 kb on + strand at 5859.046 kb on - strand at 5859.059 kb on + strand at 5859.090 kb on + strand at 5859.090 kb on + strand at 5859.090 kb on + strand at 5859.090 kb on + strand at 5859.090 kb on + strand at 5859.091 kb on - strand at 5859.091 kb on - strand at 5859.091 kb on - strand at 5859.091 kb on - strand at 5859.091 kb on - strand at 5859.091 kb on - strand at 5859.119 kb on + strand at 5859.120 kb on - strand at 5859.155 kb on - strand at 5859.173 kb on - strand at 5859.173 kb on - strand at 5859.232 kb on + strand at 5859.232 kb on + strand at 5859.232 kb on + strand at 5859.233 kb on - strand at 5859.233 kb on - strand at 5859.233 kb on - strand at 5859.235 kb on + strand at 5859.571 kb on + strand, within Psyr_4944 at 5859.590 kb on + strand, within Psyr_4944 at 5859.659 kb on + strand, within Psyr_4944 at 5859.659 kb on + strand, within Psyr_4944 at 5859.659 kb on + strand, within Psyr_4944 at 5859.659 kb on + strand, within Psyr_4944 at 5859.659 kb on + strand, within Psyr_4944 at 5859.660 kb on - strand, within Psyr_4944 at 5859.660 kb on - strand, within Psyr_4944 at 5859.660 kb on - strand, within Psyr_4944 at 5859.676 kb on + strand, within Psyr_4944 at 5859.676 kb on + strand, within Psyr_4944 at 5859.677 kb on - strand, within Psyr_4944 at 5859.810 kb on + strand, within Psyr_4944 at 5859.847 kb on - strand, within Psyr_4944 at 5860.026 kb on + strand at 5860.080 kb on + strand at 5860.103 kb on + strand at 5860.104 kb on - strand at 5860.178 kb on + strand at 5860.206 kb on + strand at 5860.206 kb on + strand at 5860.207 kb on - strand at 5860.207 kb on - strand at 5860.212 kb on + strand at 5860.212 kb on + strand at 5860.212 kb on + strand at 5860.213 kb on - strand at 5860.213 kb on - strand at 5860.281 kb on + strand, within Psyr_4945 at 5860.281 kb on + strand, within Psyr_4945 at 5860.281 kb on + strand, within Psyr_4945 at 5860.282 kb on - strand, within Psyr_4945 at 5860.282 kb on - strand, within Psyr_4945 at 5860.282 kb on - strand, within Psyr_4945 at 5860.290 kb on - strand, within Psyr_4945 at 5860.389 kb on + strand, within Psyr_4945 at 5860.390 kb on - strand, within Psyr_4945 at 5860.390 kb on - strand, within Psyr_4945 at 5860.825 kb on + strand, within Psyr_4945 at 5860.825 kb on + strand, within Psyr_4945 at 5860.826 kb on - strand, within Psyr_4945 at 5860.826 kb on - strand, within Psyr_4945 at 5860.901 kb on + strand at 5860.901 kb on + strand at 5860.912 kb on + strand at 5860.912 kb on + strand at 5860.912 kb on + strand at 5860.912 kb on + strand at 5860.912 kb on + strand at 5860.913 kb on - strand at 5860.913 kb on - strand at 5860.913 kb on - strand at 5860.913 kb on - strand at 5860.913 kb on - strand at 5860.913 kb on - strand at 5860.948 kb on - strand at 5860.948 kb on - strand at 5860.948 kb on - strand at 5860.949 kb on + strand at 5860.950 kb on - strand at 5860.950 kb on - strand at 5861.015 kb on + strand at 5861.016 kb on - strand at 5861.024 kb on + strand at 5861.025 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Quercetin 360 ug/ml remove 5,858,257 + Psyr_4942 0.60 -0.1 5,858,257 + Psyr_4942 0.60 -0.2 5,858,414 + Psyr_4942 0.84 -2.2 5,858,414 + Psyr_4942 0.84 -0.7 5,858,415 - Psyr_4942 0.84 +0.4 5,858,518 + +1.3 5,858,518 + -0.0 5,858,518 + -0.7 5,858,519 - +0.9 5,858,519 - +0.3 5,858,519 - +0.8 5,858,519 - +0.5 5,858,519 - -0.4 5,858,651 - Psyr_4943 0.20 +0.8 5,858,668 + Psyr_4943 0.23 -1.4 5,858,668 + Psyr_4943 0.23 +1.2 5,858,684 + Psyr_4943 0.27 +4.2 5,858,685 - Psyr_4943 0.27 +0.1 5,858,719 + Psyr_4943 0.35 -0.0 5,858,720 - Psyr_4943 0.35 -0.6 5,858,909 + Psyr_4943 0.78 -0.5 5,858,909 + Psyr_4943 0.78 -1.2 5,858,909 + Psyr_4943 0.78 +0.5 5,858,909 + Psyr_4943 0.78 +0.6 5,858,909 + Psyr_4943 0.78 -1.4 5,858,909 + Psyr_4943 0.78 -0.1 5,858,909 + Psyr_4943 0.78 +0.1 5,858,910 - Psyr_4943 0.78 -0.4 5,858,910 - Psyr_4943 0.78 +1.1 5,858,910 - Psyr_4943 0.78 -0.6 5,858,996 + +0.8 5,858,997 - -0.7 5,859,020 + -0.3 5,859,020 + +0.1 5,859,021 - +0.9 5,859,024 + +0.2 5,859,024 + -0.3 5,859,024 + +0.5 5,859,024 + -0.7 5,859,024 + -1.6 5,859,024 + -0.2 5,859,025 - +1.0 5,859,025 - +0.1 5,859,025 - +0.4 5,859,025 - +0.3 5,859,045 + +0.2 5,859,046 - -0.8 5,859,059 + +0.3 5,859,090 + +1.3 5,859,090 + -0.3 5,859,090 + -1.0 5,859,090 + +1.0 5,859,090 + -0.7 5,859,091 - -0.0 5,859,091 - +1.0 5,859,091 - +1.1 5,859,091 - +0.7 5,859,091 - +0.1 5,859,091 - -0.9 5,859,119 + -0.3 5,859,120 - -0.7 5,859,155 - -2.2 5,859,173 - -0.7 5,859,173 - -1.0 5,859,232 + -1.7 5,859,232 + +0.5 5,859,232 + +1.2 5,859,233 - +1.0 5,859,233 - +0.9 5,859,233 - -0.4 5,859,235 + +0.7 5,859,571 + Psyr_4944 0.47 +0.2 5,859,590 + Psyr_4944 0.49 -0.0 5,859,659 + Psyr_4944 0.57 -1.4 5,859,659 + Psyr_4944 0.57 -0.8 5,859,659 + Psyr_4944 0.57 -0.6 5,859,659 + Psyr_4944 0.57 -0.5 5,859,659 + Psyr_4944 0.57 +0.3 5,859,660 - Psyr_4944 0.57 -2.0 5,859,660 - Psyr_4944 0.57 -1.0 5,859,660 - Psyr_4944 0.57 -0.6 5,859,676 + Psyr_4944 0.59 +0.4 5,859,676 + Psyr_4944 0.59 -0.7 5,859,677 - Psyr_4944 0.59 -0.9 5,859,810 + Psyr_4944 0.74 -1.1 5,859,847 - Psyr_4944 0.78 +0.2 5,860,026 + -1.0 5,860,080 + +0.3 5,860,103 + +1.9 5,860,104 - +0.3 5,860,178 + +0.6 5,860,206 + -0.3 5,860,206 + +0.2 5,860,207 - +0.1 5,860,207 - -2.7 5,860,212 + -0.6 5,860,212 + -2.7 5,860,212 + +2.0 5,860,213 - +2.1 5,860,213 - -0.5 5,860,281 + Psyr_4945 0.17 +0.6 5,860,281 + Psyr_4945 0.17 +0.2 5,860,281 + Psyr_4945 0.17 -2.2 5,860,282 - Psyr_4945 0.17 +0.1 5,860,282 - Psyr_4945 0.17 +0.7 5,860,282 - Psyr_4945 0.17 -0.1 5,860,290 - Psyr_4945 0.18 +0.2 5,860,389 + Psyr_4945 0.30 +0.8 5,860,390 - Psyr_4945 0.30 -2.5 5,860,390 - Psyr_4945 0.30 +1.1 5,860,825 + Psyr_4945 0.82 -1.5 5,860,825 + Psyr_4945 0.82 -1.1 5,860,826 - Psyr_4945 0.82 -0.1 5,860,826 - Psyr_4945 0.82 +0.9 5,860,901 + +0.4 5,860,901 + -0.1 5,860,912 + -1.6 5,860,912 + -1.8 5,860,912 + -1.9 5,860,912 + -0.5 5,860,912 + +0.5 5,860,913 - +0.5 5,860,913 - +0.7 5,860,913 - +0.4 5,860,913 - +0.6 5,860,913 - +1.5 5,860,913 - +0.6 5,860,948 - -1.0 5,860,948 - -0.2 5,860,948 - +1.2 5,860,949 + -0.7 5,860,950 - +0.2 5,860,950 - +0.5 5,861,015 + -0.0 5,861,016 - -1.0 5,861,024 + +1.2 5,861,025 - +0.7
Or see this region's nucleotide sequence