Experiment: KB with Quercetin 360 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4844 and Psyr_4845 are separated by 13 nucleotides Psyr_4845 and Psyr_4846 are separated by 531 nucleotides Psyr_4846 and Psyr_4847 are separated by 161 nucleotides Psyr_4847 and Psyr_4848 are separated by 45 nucleotides
Psyr_4844: Psyr_4844 - HAD-superfamily hydrolase, subfamily IB (PSPase-like):HAD-superfamily subfamily IB hydrolase, hypothetical 2, at 5,750,644 to 5,751,300
_4844
Psyr_4845: Psyr_4845 - conserved hypothetical protein, at 5,751,314 to 5,751,742
_4845
Psyr_4846: Psyr_4846 - L-threonine ammonia-lyase, at 5,752,274 to 5,753,788
_4846
Psyr_4847: Psyr_4847 - ribose-5-phosphate isomerase, at 5,753,950 to 5,754,621
_4847
Psyr_4848: Psyr_4848 - SdiA-regulated, at 5,754,667 to 5,755,620
_4848
Position (kb) 5752
5753
5754 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 5751.285 kb on + strand at 5751.285 kb on + strand at 5751.286 kb on - strand at 5751.311 kb on + strand at 5751.312 kb on - strand at 5751.312 kb on - strand at 5751.312 kb on - strand at 5751.474 kb on + strand at 5751.475 kb on - strand, within Psyr_4845 at 5751.475 kb on - strand, within Psyr_4845 at 5751.718 kb on + strand at 5751.718 kb on + strand at 5751.718 kb on + strand at 5751.718 kb on + strand at 5751.718 kb on + strand at 5751.718 kb on + strand at 5751.718 kb on + strand at 5751.718 kb on + strand at 5751.718 kb on + strand at 5751.719 kb on - strand at 5751.719 kb on - strand at 5751.719 kb on - strand at 5751.719 kb on - strand at 5751.719 kb on - strand at 5751.719 kb on - strand at 5751.719 kb on - strand at 5751.719 kb on - strand at 5751.722 kb on - strand at 5751.781 kb on - strand at 5751.781 kb on - strand at 5751.795 kb on + strand at 5751.795 kb on + strand at 5751.795 kb on + strand at 5751.796 kb on - strand at 5751.796 kb on - strand at 5751.796 kb on - strand at 5751.796 kb on - strand at 5751.838 kb on + strand at 5751.838 kb on + strand at 5751.839 kb on - strand at 5751.962 kb on + strand at 5751.962 kb on + strand at 5751.964 kb on + strand at 5752.041 kb on + strand at 5752.041 kb on + strand at 5752.041 kb on + strand at 5752.041 kb on + strand at 5752.041 kb on + strand at 5752.042 kb on - strand at 5752.042 kb on - strand at 5752.042 kb on - strand at 5752.042 kb on - strand at 5752.042 kb on - strand at 5752.042 kb on - strand at 5752.042 kb on - strand at 5752.085 kb on - strand at 5752.085 kb on - strand at 5752.085 kb on - strand at 5752.263 kb on + strand at 5752.379 kb on + strand at 5752.380 kb on - strand at 5752.380 kb on - strand at 5752.923 kb on + strand, within Psyr_4846 at 5752.923 kb on + strand, within Psyr_4846 at 5752.923 kb on + strand, within Psyr_4846 at 5752.923 kb on + strand, within Psyr_4846 at 5752.923 kb on + strand, within Psyr_4846 at 5752.923 kb on + strand, within Psyr_4846 at 5752.923 kb on + strand, within Psyr_4846 at 5752.923 kb on + strand, within Psyr_4846 at 5752.923 kb on + strand, within Psyr_4846 at 5752.923 kb on + strand, within Psyr_4846 at 5752.923 kb on + strand, within Psyr_4846 at 5752.923 kb on + strand, within Psyr_4846 at 5752.924 kb on - strand, within Psyr_4846 at 5752.924 kb on - strand, within Psyr_4846 at 5752.924 kb on - strand, within Psyr_4846 at 5752.924 kb on - strand, within Psyr_4846 at 5752.924 kb on - strand, within Psyr_4846 at 5752.924 kb on - strand, within Psyr_4846 at 5752.924 kb on - strand, within Psyr_4846 at 5752.924 kb on - strand, within Psyr_4846 at 5752.924 kb on - strand, within Psyr_4846 at 5752.924 kb on - strand, within Psyr_4846 at 5752.987 kb on - strand, within Psyr_4846 at 5752.987 kb on - strand, within Psyr_4846 at 5752.987 kb on - strand, within Psyr_4846 at 5752.987 kb on - strand, within Psyr_4846 at 5752.987 kb on - strand, within Psyr_4846 at 5752.987 kb on - strand, within Psyr_4846 at 5752.987 kb on - strand, within Psyr_4846 at 5752.987 kb on - strand, within Psyr_4846 at 5752.987 kb on - strand, within Psyr_4846 at 5752.987 kb on - strand, within Psyr_4846 at 5753.364 kb on + strand, within Psyr_4846 at 5753.364 kb on + strand, within Psyr_4846 at 5753.364 kb on + strand, within Psyr_4846 at 5753.364 kb on + strand, within Psyr_4846 at 5753.364 kb on + strand, within Psyr_4846 at 5753.364 kb on + strand, within Psyr_4846 at 5753.622 kb on + strand, within Psyr_4846 at 5753.745 kb on + strand at 5753.775 kb on + strand at 5753.775 kb on + strand at 5753.775 kb on + strand at 5753.775 kb on + strand at 5753.776 kb on - strand at 5753.776 kb on - strand at 5753.776 kb on - strand at 5753.776 kb on - strand at 5753.776 kb on - strand at 5753.776 kb on - strand at 5753.830 kb on + strand at 5753.830 kb on + strand at 5753.856 kb on - strand at 5753.856 kb on - strand at 5753.889 kb on + strand at 5753.891 kb on + strand at 5753.891 kb on + strand at 5753.891 kb on + strand at 5753.922 kb on + strand at 5753.922 kb on + strand at 5753.922 kb on + strand at 5753.922 kb on + strand at 5753.922 kb on + strand at 5753.922 kb on + strand at 5753.922 kb on + strand at 5753.922 kb on + strand at 5753.926 kb on + strand at 5753.926 kb on + strand at 5753.926 kb on + strand at 5753.926 kb on + strand at 5753.926 kb on + strand at 5753.926 kb on + strand at 5753.926 kb on + strand at 5753.926 kb on + strand at 5753.926 kb on + strand at 5753.926 kb on + strand at 5753.926 kb on + strand at 5753.926 kb on + strand at 5753.926 kb on + strand at 5754.686 kb on + strand at 5754.686 kb on + strand at 5754.687 kb on - strand at 5754.713 kb on + strand at 5754.713 kb on + strand at 5754.713 kb on + strand at 5754.713 kb on + strand at 5754.713 kb on + strand at 5754.714 kb on - strand at 5754.714 kb on - strand at 5754.714 kb on - strand at 5754.714 kb on - strand at 5754.714 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Quercetin 360 ug/ml remove 5,751,285 + -0.7 5,751,285 + -3.2 5,751,286 - +0.2 5,751,311 + -0.2 5,751,312 - -1.7 5,751,312 - +0.6 5,751,312 - +0.5 5,751,474 + +0.4 5,751,475 - Psyr_4845 0.38 -0.2 5,751,475 - Psyr_4845 0.38 -0.6 5,751,718 + -0.7 5,751,718 + +0.4 5,751,718 + -1.8 5,751,718 + -0.2 5,751,718 + +0.1 5,751,718 + +0.3 5,751,718 + +0.6 5,751,718 + -0.2 5,751,718 + +0.4 5,751,719 - +2.3 5,751,719 - +1.1 5,751,719 - +0.3 5,751,719 - +0.7 5,751,719 - -0.2 5,751,719 - +0.0 5,751,719 - -1.1 5,751,719 - +0.6 5,751,722 - -0.6 5,751,781 - +0.2 5,751,781 - +0.5 5,751,795 + -1.2 5,751,795 + +0.8 5,751,795 + +0.7 5,751,796 - +1.1 5,751,796 - +1.2 5,751,796 - -1.0 5,751,796 - -0.3 5,751,838 + +0.7 5,751,838 + -0.0 5,751,839 - -1.0 5,751,962 + +0.1 5,751,962 + -0.0 5,751,964 + +0.5 5,752,041 + -1.0 5,752,041 + +0.8 5,752,041 + -0.3 5,752,041 + -0.3 5,752,041 + -0.1 5,752,042 - +0.3 5,752,042 - -0.4 5,752,042 - +2.0 5,752,042 - +0.2 5,752,042 - -0.6 5,752,042 - +0.4 5,752,042 - +0.4 5,752,085 - +0.6 5,752,085 - +2.5 5,752,085 - -1.4 5,752,263 + -0.8 5,752,379 + -0.8 5,752,380 - -1.9 5,752,380 - +0.3 5,752,923 + Psyr_4846 0.43 +0.3 5,752,923 + Psyr_4846 0.43 +2.8 5,752,923 + Psyr_4846 0.43 +0.6 5,752,923 + Psyr_4846 0.43 +0.5 5,752,923 + Psyr_4846 0.43 +0.7 5,752,923 + Psyr_4846 0.43 +0.3 5,752,923 + Psyr_4846 0.43 +0.9 5,752,923 + Psyr_4846 0.43 -1.6 5,752,923 + Psyr_4846 0.43 +0.2 5,752,923 + Psyr_4846 0.43 +0.0 5,752,923 + Psyr_4846 0.43 -1.1 5,752,923 + Psyr_4846 0.43 +1.2 5,752,924 - Psyr_4846 0.43 -0.1 5,752,924 - Psyr_4846 0.43 +0.3 5,752,924 - Psyr_4846 0.43 +0.2 5,752,924 - Psyr_4846 0.43 +0.0 5,752,924 - Psyr_4846 0.43 +0.7 5,752,924 - Psyr_4846 0.43 -0.1 5,752,924 - Psyr_4846 0.43 +0.6 5,752,924 - Psyr_4846 0.43 +0.6 5,752,924 - Psyr_4846 0.43 -0.3 5,752,924 - Psyr_4846 0.43 +0.4 5,752,987 - Psyr_4846 0.47 +0.5 5,752,987 - Psyr_4846 0.47 -0.5 5,752,987 - Psyr_4846 0.47 -0.2 5,752,987 - Psyr_4846 0.47 -0.1 5,752,987 - Psyr_4846 0.47 +0.5 5,752,987 - Psyr_4846 0.47 +0.0 5,752,987 - Psyr_4846 0.47 +0.5 5,752,987 - Psyr_4846 0.47 +1.4 5,752,987 - Psyr_4846 0.47 +0.2 5,752,987 - Psyr_4846 0.47 +0.3 5,753,364 + Psyr_4846 0.72 +2.5 5,753,364 + Psyr_4846 0.72 +0.0 5,753,364 + Psyr_4846 0.72 -0.6 5,753,364 + Psyr_4846 0.72 -2.4 5,753,364 + Psyr_4846 0.72 +0.6 5,753,364 + Psyr_4846 0.72 +0.5 5,753,622 + Psyr_4846 0.89 -0.7 5,753,745 + +0.9 5,753,775 + +0.3 5,753,775 + +0.5 5,753,775 + +1.8 5,753,775 + +0.5 5,753,776 - +0.9 5,753,776 - +0.7 5,753,776 - -0.1 5,753,776 - -1.1 5,753,776 - +0.5 5,753,776 - -0.1 5,753,830 + +0.6 5,753,830 + -1.1 5,753,856 - -1.0 5,753,856 - +0.8 5,753,889 + -0.6 5,753,891 + -1.5 5,753,891 + +1.1 5,753,891 + -0.1 5,753,922 + +0.7 5,753,922 + -1.6 5,753,922 + +0.9 5,753,922 + -1.6 5,753,922 + +0.8 5,753,922 + +0.5 5,753,922 + -0.2 5,753,922 + +0.5 5,753,926 + -1.2 5,753,926 + -0.3 5,753,926 + -0.5 5,753,926 + -0.1 5,753,926 + -0.4 5,753,926 + +0.8 5,753,926 + -0.1 5,753,926 + -1.1 5,753,926 + +0.3 5,753,926 + +0.4 5,753,926 + +0.2 5,753,926 + -1.4 5,753,926 + -0.0 5,754,686 + -0.3 5,754,686 + +1.0 5,754,687 - -0.2 5,754,713 + +1.0 5,754,713 + -0.0 5,754,713 + -1.4 5,754,713 + +0.8 5,754,713 + -0.4 5,754,714 - +0.6 5,754,714 - -0.2 5,754,714 - -0.0 5,754,714 - -0.8 5,754,714 - -0.6
Or see this region's nucleotide sequence