Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3188

Experiment: KB with Quercetin 360 ug/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Quercetin 360 ug/ml
3,817,119	+		Psyr_3187	0.22	-1.4
3,817,120	-		Psyr_3187	0.22	-0.2
3,817,132	-		Psyr_3187	0.23	-2.0
3,817,132	-		Psyr_3187	0.23	+0.3
3,817,132	-		Psyr_3187	0.23	+1.3
3,817,157	+		Psyr_3187	0.26	-1.6
3,817,162	+		Psyr_3187	0.27	-0.2
3,817,171	-		Psyr_3187	0.28	+0.5
3,817,221	+		Psyr_3187	0.33	-0.7
3,817,221	+		Psyr_3187	0.33	+0.4
3,817,221	+		Psyr_3187	0.33	+1.7
3,817,221	+		Psyr_3187	0.33	+0.2
3,817,221	+		Psyr_3187	0.33	-0.2
3,817,221	+		Psyr_3187	0.33	-1.1
3,817,221	+		Psyr_3187	0.33	+0.9
3,817,221	+		Psyr_3187	0.33	+0.5
3,817,221	+		Psyr_3187	0.33	+0.9
3,817,221	+		Psyr_3187	0.33	+0.8
3,817,221	+		Psyr_3187	0.33	-2.0
3,817,222	-		Psyr_3187	0.34	-0.1
3,817,222	-		Psyr_3187	0.34	-0.6
3,817,222	-		Psyr_3187	0.34	-0.6
3,817,222	-		Psyr_3187	0.34	-1.2
3,817,222	-		Psyr_3187	0.34	-1.9
3,817,222	-		Psyr_3187	0.34	+1.7
3,817,240	-		Psyr_3187	0.36	+1.0
3,817,240	-		Psyr_3187	0.36	-1.1
3,817,401	+		Psyr_3187	0.54	-0.1
3,817,482	+		Psyr_3187	0.63	+1.1
3,817,490	+		Psyr_3187	0.64	-3.6
3,817,491	-		Psyr_3187	0.64	+0.5
3,817,494	+		Psyr_3187	0.64	+1.5
3,817,494	+		Psyr_3187	0.64	-0.1
3,817,494	+		Psyr_3187	0.64	-0.9
3,817,494	+		Psyr_3187	0.64	+1.7
3,817,494	+		Psyr_3187	0.64	-0.8
3,817,494	+		Psyr_3187	0.64	-0.0
3,817,494	+		Psyr_3187	0.64	-1.0
3,817,494	+		Psyr_3187	0.64	-0.3
3,817,495	-		Psyr_3187	0.65	+1.0
3,817,495	-		Psyr_3187	0.65	-0.5
3,817,495	-		Psyr_3187	0.65	+1.6
3,817,495	-		Psyr_3187	0.65	-0.5
3,817,495	-		Psyr_3187	0.65	-0.8
3,817,495	-		Psyr_3187	0.65	-0.2
3,817,495	-		Psyr_3187	0.65	+0.6
3,817,495	-		Psyr_3187	0.65	+1.1
3,817,496	+		Psyr_3187	0.65	-0.3
3,817,496	+		Psyr_3187	0.65	+0.1
3,817,497	-		Psyr_3187	0.65	+1.2
3,817,504	-		Psyr_3187	0.66	+2.1
3,817,504	-		Psyr_3187	0.66	+0.5
3,817,566	+		Psyr_3187	0.73	+1.2
3,817,567	-		Psyr_3187	0.73	+1.2
3,817,598	-		Psyr_3187	0.76	-0.7
3,817,741	-				+0.7
3,817,751	+				-0.5
3,817,751	+				+0.7
3,817,751	+				+0.7
3,817,751	+				-1.6
3,817,751	+				+1.9
3,817,751	+				+0.3
3,817,751	+				+0.9
3,817,751	+				-0.9
3,817,752	-				+0.5
3,817,752	-				+0.3
3,817,752	-				+0.7
3,817,761	-				-0.4
3,817,898	+				+0.5
3,817,898	+				-0.4
3,817,899	-				+0.6
3,817,963	+				+1.4
3,817,998	+				-0.7
3,818,017	-				-1.6
3,818,584	+		Psyr_3188	0.53	+1.2
3,818,584	+		Psyr_3188	0.53	-1.0
3,818,585	-		Psyr_3188	0.53	+0.0
3,818,597	-		Psyr_3188	0.54	+0.5
3,818,735	+		Psyr_3188	0.69	+0.3
3,818,743	-		Psyr_3188	0.70	+1.7
3,818,828	+		Psyr_3188	0.79	-0.4
3,818,829	-		Psyr_3188	0.80	+0.4
3,818,829	-		Psyr_3188	0.80	+0.6
3,818,831	+		Psyr_3188	0.80	+0.2
3,818,832	-		Psyr_3188	0.80	+2.5
3,818,892	+		Psyr_3188	0.87	+0.1
3,818,893	-		Psyr_3188	0.87	-0.1
3,818,919	-		Psyr_3188	0.90	+2.3
3,819,012	-				+1.1
3,819,012	-				+0.7
3,819,054	-				+0.3
3,819,054	-				+0.4
3,819,148	+		Psyr_3189	0.20	-0.6
3,819,149	-		Psyr_3189	0.21	+0.7
3,819,264	+		Psyr_3189	0.46	-1.1
3,819,264	+		Psyr_3189	0.46	-0.5
3,819,264	+		Psyr_3189	0.46	+0.3
3,819,264	+		Psyr_3189	0.46	+0.7
3,819,265	-		Psyr_3189	0.47	+0.0
3,819,265	-		Psyr_3189	0.47	+0.4
3,819,265	-		Psyr_3189	0.47	+1.1
3,819,265	-		Psyr_3189	0.47	+0.5
3,819,265	-		Psyr_3189	0.47	+0.5
3,819,270	+		Psyr_3189	0.48	-1.2
3,819,271	-		Psyr_3189	0.48	+0.5
3,819,297	+		Psyr_3189	0.54	+1.4
3,819,297	+		Psyr_3189	0.54	+0.4
3,819,525	+				-1.0
3,819,525	+				-0.2
3,819,525	+				+0.2