Experiment: KB with Quercetin 360 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0417 and Psyr_0418 are separated by 269 nucleotides Psyr_0418 and Psyr_0419 overlap by 4 nucleotides Psyr_0419 and Psyr_0420 are separated by 77 nucleotides
Psyr_0417: Psyr_0417 - gluconate permease GntT, at 455,430 to 456,779
_0417
Psyr_0418: Psyr_0418 - conserved domain protein, at 457,049 to 457,696
_0418
Psyr_0419: Psyr_0419 - conserved hypothetical protein, at 457,693 to 458,958
_0419
Psyr_0420: Psyr_0420 - General substrate transporter:Major facilitator superfamily, at 459,036 to 460,304
_0420
Position (kb) 457
458
459 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 456.746 kb on - strand at 456.761 kb on + strand at 456.780 kb on - strand at 456.881 kb on + strand at 456.882 kb on - strand at 456.924 kb on + strand at 456.924 kb on + strand at 456.924 kb on + strand at 456.924 kb on + strand at 456.931 kb on - strand at 457.078 kb on - strand at 457.105 kb on + strand at 457.105 kb on + strand at 457.111 kb on + strand at 457.111 kb on + strand at 457.111 kb on + strand at 457.111 kb on + strand at 457.111 kb on + strand at 457.111 kb on + strand at 457.111 kb on + strand at 457.112 kb on - strand at 457.112 kb on - strand at 457.112 kb on - strand at 457.112 kb on - strand at 457.112 kb on - strand at 457.112 kb on - strand at 457.140 kb on - strand, within Psyr_0418 at 457.140 kb on - strand, within Psyr_0418 at 457.140 kb on - strand, within Psyr_0418 at 457.230 kb on + strand, within Psyr_0418 at 457.231 kb on - strand, within Psyr_0418 at 457.389 kb on + strand, within Psyr_0418 at 457.389 kb on + strand, within Psyr_0418 at 457.390 kb on - strand, within Psyr_0418 at 457.390 kb on - strand, within Psyr_0418 at 457.476 kb on + strand, within Psyr_0418 at 457.476 kb on + strand, within Psyr_0418 at 457.476 kb on + strand, within Psyr_0418 at 457.477 kb on - strand, within Psyr_0418 at 457.523 kb on + strand, within Psyr_0418 at 457.523 kb on + strand, within Psyr_0418 at 457.524 kb on - strand, within Psyr_0418 at 457.524 kb on - strand, within Psyr_0418 at 457.539 kb on + strand, within Psyr_0418 at 457.540 kb on - strand, within Psyr_0418 at 457.614 kb on + strand, within Psyr_0418 at 457.614 kb on + strand, within Psyr_0418 at 457.615 kb on - strand, within Psyr_0418 at 457.615 kb on - strand, within Psyr_0418 at 457.750 kb on + strand at 457.751 kb on - strand at 457.828 kb on + strand, within Psyr_0419 at 457.828 kb on + strand, within Psyr_0419 at 457.828 kb on + strand, within Psyr_0419 at 457.828 kb on + strand, within Psyr_0419 at 457.828 kb on + strand, within Psyr_0419 at 457.828 kb on + strand, within Psyr_0419 at 457.829 kb on - strand, within Psyr_0419 at 457.829 kb on - strand, within Psyr_0419 at 457.829 kb on - strand, within Psyr_0419 at 457.913 kb on + strand, within Psyr_0419 at 457.914 kb on - strand, within Psyr_0419 at 457.914 kb on - strand, within Psyr_0419 at 458.122 kb on + strand, within Psyr_0419 at 458.122 kb on + strand, within Psyr_0419 at 458.122 kb on + strand, within Psyr_0419 at 458.122 kb on + strand, within Psyr_0419 at 458.122 kb on + strand, within Psyr_0419 at 458.123 kb on - strand, within Psyr_0419 at 458.123 kb on - strand, within Psyr_0419 at 458.123 kb on - strand, within Psyr_0419 at 458.150 kb on - strand, within Psyr_0419 at 458.161 kb on - strand, within Psyr_0419 at 458.276 kb on + strand, within Psyr_0419 at 458.276 kb on + strand, within Psyr_0419 at 458.277 kb on - strand, within Psyr_0419 at 458.281 kb on + strand, within Psyr_0419 at 458.281 kb on + strand, within Psyr_0419 at 458.281 kb on + strand, within Psyr_0419 at 458.281 kb on + strand, within Psyr_0419 at 458.282 kb on - strand, within Psyr_0419 at 458.282 kb on - strand, within Psyr_0419 at 458.282 kb on - strand, within Psyr_0419 at 458.282 kb on - strand, within Psyr_0419 at 458.282 kb on - strand, within Psyr_0419 at 458.282 kb on - strand, within Psyr_0419 at 458.282 kb on - strand, within Psyr_0419 at 458.456 kb on + strand, within Psyr_0419 at 458.456 kb on + strand, within Psyr_0419 at 458.456 kb on + strand, within Psyr_0419 at 458.456 kb on + strand, within Psyr_0419 at 458.456 kb on + strand, within Psyr_0419 at 458.456 kb on + strand, within Psyr_0419 at 458.456 kb on + strand, within Psyr_0419 at 458.456 kb on + strand, within Psyr_0419 at 458.456 kb on + strand, within Psyr_0419 at 458.457 kb on - strand, within Psyr_0419 at 458.457 kb on - strand, within Psyr_0419 at 458.503 kb on + strand, within Psyr_0419 at 458.538 kb on - strand, within Psyr_0419 at 458.538 kb on - strand, within Psyr_0419 at 458.549 kb on - strand, within Psyr_0419 at 458.549 kb on - strand, within Psyr_0419 at 458.602 kb on + strand, within Psyr_0419 at 458.602 kb on + strand, within Psyr_0419 at 458.656 kb on + strand, within Psyr_0419 at 458.656 kb on + strand, within Psyr_0419 at 458.656 kb on + strand, within Psyr_0419 at 458.657 kb on - strand, within Psyr_0419 at 458.711 kb on + strand, within Psyr_0419 at 458.747 kb on - strand, within Psyr_0419 at 458.809 kb on + strand, within Psyr_0419 at 458.809 kb on + strand, within Psyr_0419 at 458.810 kb on - strand, within Psyr_0419 at 458.810 kb on - strand, within Psyr_0419 at 458.919 kb on - strand at 458.997 kb on + strand at 458.997 kb on + strand at 458.997 kb on + strand at 458.997 kb on + strand at 458.997 kb on + strand at 458.998 kb on - strand at 458.998 kb on - strand at 458.998 kb on - strand at 458.998 kb on - strand at 459.027 kb on + strand at 459.027 kb on + strand at 459.027 kb on + strand at 459.028 kb on - strand at 459.028 kb on - strand at 459.028 kb on - strand at 459.028 kb on - strand at 459.111 kb on + strand at 459.111 kb on + strand at 459.111 kb on + strand at 459.112 kb on - strand at 459.112 kb on - strand at 459.143 kb on - strand at 459.191 kb on - strand, within Psyr_0420 at 459.193 kb on + strand, within Psyr_0420 at 459.194 kb on - strand, within Psyr_0420 at 459.194 kb on - strand, within Psyr_0420 at 459.205 kb on + strand, within Psyr_0420 at 459.205 kb on + strand, within Psyr_0420 at 459.205 kb on + strand, within Psyr_0420 at 459.206 kb on - strand, within Psyr_0420 at 459.206 kb on - strand, within Psyr_0420 at 459.399 kb on + strand, within Psyr_0420 at 459.400 kb on - strand, within Psyr_0420 at 459.436 kb on + strand, within Psyr_0420 at 459.436 kb on + strand, within Psyr_0420 at 459.436 kb on + strand, within Psyr_0420 at 459.436 kb on + strand, within Psyr_0420 at 459.436 kb on + strand, within Psyr_0420 at 459.436 kb on + strand, within Psyr_0420 at 459.436 kb on + strand, within Psyr_0420 at 459.436 kb on + strand, within Psyr_0420 at 459.437 kb on - strand, within Psyr_0420 at 459.437 kb on - strand, within Psyr_0420 at 459.437 kb on - strand, within Psyr_0420 at 459.437 kb on - strand, within Psyr_0420 at 459.451 kb on + strand, within Psyr_0420 at 459.451 kb on + strand, within Psyr_0420 at 459.451 kb on + strand, within Psyr_0420 at 459.452 kb on - strand, within Psyr_0420 at 459.452 kb on - strand, within Psyr_0420 at 459.493 kb on + strand, within Psyr_0420 at 459.494 kb on - strand, within Psyr_0420 at 459.523 kb on + strand, within Psyr_0420 at 459.524 kb on - strand, within Psyr_0420 at 459.524 kb on - strand, within Psyr_0420 at 459.524 kb on - strand, within Psyr_0420 at 459.524 kb on - strand, within Psyr_0420 at 459.524 kb on - strand, within Psyr_0420 at 459.524 kb on - strand, within Psyr_0420 at 459.524 kb on - strand, within Psyr_0420 at 459.745 kb on + strand, within Psyr_0420 at 459.745 kb on + strand, within Psyr_0420 at 459.746 kb on - strand, within Psyr_0420 at 459.746 kb on - strand, within Psyr_0420 at 459.746 kb on - strand, within Psyr_0420 at 459.746 kb on - strand, within Psyr_0420 at 459.746 kb on - strand, within Psyr_0420 at 459.746 kb on - strand, within Psyr_0420 at 459.746 kb on - strand, within Psyr_0420 at 459.808 kb on + strand, within Psyr_0420 at 459.808 kb on + strand, within Psyr_0420 at 459.808 kb on + strand, within Psyr_0420 at 459.808 kb on + strand, within Psyr_0420 at 459.808 kb on + strand, within Psyr_0420 at 459.808 kb on + strand, within Psyr_0420 at 459.808 kb on + strand, within Psyr_0420 at 459.808 kb on + strand, within Psyr_0420 at 459.808 kb on + strand, within Psyr_0420 at 459.809 kb on - strand, within Psyr_0420 at 459.809 kb on - strand, within Psyr_0420 at 459.809 kb on - strand, within Psyr_0420 at 459.809 kb on - strand, within Psyr_0420 at 459.809 kb on - strand, within Psyr_0420 at 459.809 kb on - strand, within Psyr_0420 at 459.809 kb on - strand, within Psyr_0420 at 459.809 kb on - strand, within Psyr_0420 at 459.809 kb on - strand, within Psyr_0420 at 459.809 kb on - strand, within Psyr_0420 at 459.809 kb on - strand, within Psyr_0420 at 459.859 kb on + strand, within Psyr_0420 at 459.859 kb on + strand, within Psyr_0420 at 459.860 kb on - strand, within Psyr_0420 at 459.860 kb on - strand, within Psyr_0420 at 459.900 kb on + strand, within Psyr_0420 at 459.900 kb on + strand, within Psyr_0420 at 459.901 kb on - strand, within Psyr_0420 at 459.901 kb on - strand, within Psyr_0420 at 459.901 kb on - strand, within Psyr_0420 at 459.901 kb on - strand, within Psyr_0420 at 459.901 kb on - strand, within Psyr_0420 at 459.901 kb on - strand, within Psyr_0420 at 459.901 kb on - strand, within Psyr_0420
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Quercetin 360 ug/ml remove 456,746 - -2.4 456,761 + -0.2 456,780 - +0.4 456,881 + +1.5 456,882 - +0.3 456,924 + -1.9 456,924 + +1.3 456,924 + +1.3 456,924 + -0.2 456,931 - -0.1 457,078 - +0.9 457,105 + -0.3 457,105 + +0.5 457,111 + -0.1 457,111 + -0.3 457,111 + +1.1 457,111 + -0.8 457,111 + -0.7 457,111 + -0.6 457,111 + -0.8 457,112 - -0.3 457,112 - -0.9 457,112 - +1.2 457,112 - +0.8 457,112 - -1.0 457,112 - -0.1 457,140 - Psyr_0418 0.14 +0.7 457,140 - Psyr_0418 0.14 +0.5 457,140 - Psyr_0418 0.14 +0.8 457,230 + Psyr_0418 0.28 +0.0 457,231 - Psyr_0418 0.28 -1.1 457,389 + Psyr_0418 0.52 +0.0 457,389 + Psyr_0418 0.52 +0.4 457,390 - Psyr_0418 0.53 +0.0 457,390 - Psyr_0418 0.53 -1.3 457,476 + Psyr_0418 0.66 +0.8 457,476 + Psyr_0418 0.66 +0.1 457,476 + Psyr_0418 0.66 -0.6 457,477 - Psyr_0418 0.66 +0.9 457,523 + Psyr_0418 0.73 +1.2 457,523 + Psyr_0418 0.73 +1.9 457,524 - Psyr_0418 0.73 -0.7 457,524 - Psyr_0418 0.73 -2.8 457,539 + Psyr_0418 0.76 -2.2 457,540 - Psyr_0418 0.76 -1.1 457,614 + Psyr_0418 0.87 +0.4 457,614 + Psyr_0418 0.87 -0.1 457,615 - Psyr_0418 0.87 -0.6 457,615 - Psyr_0418 0.87 -0.9 457,750 + -0.6 457,751 - -0.4 457,828 + Psyr_0419 0.11 +1.2 457,828 + Psyr_0419 0.11 +0.0 457,828 + Psyr_0419 0.11 +0.7 457,828 + Psyr_0419 0.11 +0.4 457,828 + Psyr_0419 0.11 -1.1 457,828 + Psyr_0419 0.11 +0.3 457,829 - Psyr_0419 0.11 +1.8 457,829 - Psyr_0419 0.11 -0.4 457,829 - Psyr_0419 0.11 -0.1 457,913 + Psyr_0419 0.17 +0.3 457,914 - Psyr_0419 0.17 +0.2 457,914 - Psyr_0419 0.17 +0.7 458,122 + Psyr_0419 0.34 +3.9 458,122 + Psyr_0419 0.34 +1.6 458,122 + Psyr_0419 0.34 -1.6 458,122 + Psyr_0419 0.34 +0.9 458,122 + Psyr_0419 0.34 +0.1 458,123 - Psyr_0419 0.34 +1.2 458,123 - Psyr_0419 0.34 +1.0 458,123 - Psyr_0419 0.34 -0.6 458,150 - Psyr_0419 0.36 +0.2 458,161 - Psyr_0419 0.37 +0.7 458,276 + Psyr_0419 0.46 -0.7 458,276 + Psyr_0419 0.46 +1.1 458,277 - Psyr_0419 0.46 -0.3 458,281 + Psyr_0419 0.46 -0.2 458,281 + Psyr_0419 0.46 -0.1 458,281 + Psyr_0419 0.46 +0.6 458,281 + Psyr_0419 0.46 +0.9 458,282 - Psyr_0419 0.47 +0.0 458,282 - Psyr_0419 0.47 +1.0 458,282 - Psyr_0419 0.47 +0.2 458,282 - Psyr_0419 0.47 -0.5 458,282 - Psyr_0419 0.47 -1.0 458,282 - Psyr_0419 0.47 -0.4 458,282 - Psyr_0419 0.47 +0.3 458,456 + Psyr_0419 0.60 +1.0 458,456 + Psyr_0419 0.60 +0.7 458,456 + Psyr_0419 0.60 +0.4 458,456 + Psyr_0419 0.60 +0.9 458,456 + Psyr_0419 0.60 +0.3 458,456 + Psyr_0419 0.60 +0.4 458,456 + Psyr_0419 0.60 +0.7 458,456 + Psyr_0419 0.60 +0.9 458,456 + Psyr_0419 0.60 +0.7 458,457 - Psyr_0419 0.60 -0.3 458,457 - Psyr_0419 0.60 +0.2 458,503 + Psyr_0419 0.64 -3.3 458,538 - Psyr_0419 0.67 +1.1 458,538 - Psyr_0419 0.67 -1.6 458,549 - Psyr_0419 0.68 +0.0 458,549 - Psyr_0419 0.68 +0.5 458,602 + Psyr_0419 0.72 -0.4 458,602 + Psyr_0419 0.72 +0.3 458,656 + Psyr_0419 0.76 +0.2 458,656 + Psyr_0419 0.76 -0.8 458,656 + Psyr_0419 0.76 +0.4 458,657 - Psyr_0419 0.76 +0.5 458,711 + Psyr_0419 0.80 +0.4 458,747 - Psyr_0419 0.83 +2.5 458,809 + Psyr_0419 0.88 -0.1 458,809 + Psyr_0419 0.88 +0.3 458,810 - Psyr_0419 0.88 -0.1 458,810 - Psyr_0419 0.88 +0.3 458,919 - +2.9 458,997 + +2.0 458,997 + -0.4 458,997 + +0.5 458,997 + +1.5 458,997 + +0.3 458,998 - +0.9 458,998 - +0.4 458,998 - +0.7 458,998 - +0.5 459,027 + +2.4 459,027 + +1.2 459,027 + -0.9 459,028 - +1.0 459,028 - -0.9 459,028 - +0.6 459,028 - -1.1 459,111 + -0.8 459,111 + -1.1 459,111 + -2.8 459,112 - +0.0 459,112 - -2.2 459,143 - -1.4 459,191 - Psyr_0420 0.12 +0.3 459,193 + Psyr_0420 0.12 -0.4 459,194 - Psyr_0420 0.12 +1.9 459,194 - Psyr_0420 0.12 +0.2 459,205 + Psyr_0420 0.13 +0.3 459,205 + Psyr_0420 0.13 +0.6 459,205 + Psyr_0420 0.13 -1.1 459,206 - Psyr_0420 0.13 +0.8 459,206 - Psyr_0420 0.13 +0.4 459,399 + Psyr_0420 0.29 +1.6 459,400 - Psyr_0420 0.29 -0.8 459,436 + Psyr_0420 0.32 +0.1 459,436 + Psyr_0420 0.32 +0.5 459,436 + Psyr_0420 0.32 -1.3 459,436 + Psyr_0420 0.32 +0.3 459,436 + Psyr_0420 0.32 +2.8 459,436 + Psyr_0420 0.32 -1.6 459,436 + Psyr_0420 0.32 -1.5 459,436 + Psyr_0420 0.32 -1.5 459,437 - Psyr_0420 0.32 +0.9 459,437 - Psyr_0420 0.32 -1.1 459,437 - Psyr_0420 0.32 -1.8 459,437 - Psyr_0420 0.32 -0.2 459,451 + Psyr_0420 0.33 +0.1 459,451 + Psyr_0420 0.33 +0.1 459,451 + Psyr_0420 0.33 +2.8 459,452 - Psyr_0420 0.33 +0.2 459,452 - Psyr_0420 0.33 +0.2 459,493 + Psyr_0420 0.36 -0.7 459,494 - Psyr_0420 0.36 +1.0 459,523 + Psyr_0420 0.38 -0.8 459,524 - Psyr_0420 0.38 -1.7 459,524 - Psyr_0420 0.38 +1.8 459,524 - Psyr_0420 0.38 -1.3 459,524 - Psyr_0420 0.38 +0.4 459,524 - Psyr_0420 0.38 -0.5 459,524 - Psyr_0420 0.38 +1.4 459,524 - Psyr_0420 0.38 -1.4 459,745 + Psyr_0420 0.56 +0.4 459,745 + Psyr_0420 0.56 -0.9 459,746 - Psyr_0420 0.56 +0.7 459,746 - Psyr_0420 0.56 +0.3 459,746 - Psyr_0420 0.56 +1.0 459,746 - Psyr_0420 0.56 +1.0 459,746 - Psyr_0420 0.56 +0.6 459,746 - Psyr_0420 0.56 +0.5 459,746 - Psyr_0420 0.56 -0.8 459,808 + Psyr_0420 0.61 -0.9 459,808 + Psyr_0420 0.61 +0.8 459,808 + Psyr_0420 0.61 +0.1 459,808 + Psyr_0420 0.61 -0.6 459,808 + Psyr_0420 0.61 +0.7 459,808 + Psyr_0420 0.61 +1.3 459,808 + Psyr_0420 0.61 +0.2 459,808 + Psyr_0420 0.61 +0.6 459,808 + Psyr_0420 0.61 +1.4 459,809 - Psyr_0420 0.61 +0.3 459,809 - Psyr_0420 0.61 +0.9 459,809 - Psyr_0420 0.61 -0.5 459,809 - Psyr_0420 0.61 +0.9 459,809 - Psyr_0420 0.61 +0.4 459,809 - Psyr_0420 0.61 +1.9 459,809 - Psyr_0420 0.61 -2.9 459,809 - Psyr_0420 0.61 +0.9 459,809 - Psyr_0420 0.61 -0.9 459,809 - Psyr_0420 0.61 -0.4 459,809 - Psyr_0420 0.61 +1.4 459,859 + Psyr_0420 0.65 +0.1 459,859 + Psyr_0420 0.65 +0.0 459,860 - Psyr_0420 0.65 -1.2 459,860 - Psyr_0420 0.65 +0.4 459,900 + Psyr_0420 0.68 +0.2 459,900 + Psyr_0420 0.68 -0.6 459,901 - Psyr_0420 0.68 +0.2 459,901 - Psyr_0420 0.68 +0.1 459,901 - Psyr_0420 0.68 -1.5 459,901 - Psyr_0420 0.68 -0.3 459,901 - Psyr_0420 0.68 +0.0 459,901 - Psyr_0420 0.68 +0.0 459,901 - Psyr_0420 0.68 +0.7
Or see this region's nucleotide sequence