Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4172

Experiment: KB with Ferulic Acid 180 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_4171 and Psyr_4172 are separated by 157 nucleotidesPsyr_4172 and Psyr_4173 are separated by 78 nucleotides Psyr_4171: Psyr_4171 - Twin-arginine translocation pathway signal, at 4,960,367 to 4,961,950 _4171 Psyr_4172: Psyr_4172 - conserved hypothetical protein, at 4,962,108 to 4,963,124 _4172 Psyr_4173: Psyr_4173 - Protein of unknown function DUF748, at 4,963,203 to 4,966,232 _4173 Position (kb) 4962 4963 4964Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 4961.110 kb on - strand, within Psyr_4171at 4961.158 kb on - strand, within Psyr_4171at 4961.158 kb on - strand, within Psyr_4171at 4961.158 kb on - strand, within Psyr_4171at 4961.275 kb on - strand, within Psyr_4171at 4961.292 kb on + strand, within Psyr_4171at 4961.397 kb on + strand, within Psyr_4171at 4961.397 kb on + strand, within Psyr_4171at 4961.397 kb on + strand, within Psyr_4171at 4961.398 kb on - strand, within Psyr_4171at 4961.398 kb on - strand, within Psyr_4171at 4961.454 kb on + strand, within Psyr_4171at 4961.454 kb on + strand, within Psyr_4171at 4961.454 kb on + strand, within Psyr_4171at 4961.454 kb on + strand, within Psyr_4171at 4961.454 kb on + strand, within Psyr_4171at 4961.454 kb on + strand, within Psyr_4171at 4961.454 kb on + strand, within Psyr_4171at 4961.454 kb on + strand, within Psyr_4171at 4961.455 kb on - strandat 4961.455 kb on - strand, within Psyr_4171at 4961.455 kb on - strand, within Psyr_4171at 4961.455 kb on - strand, within Psyr_4171at 4961.455 kb on - strand, within Psyr_4171at 4961.455 kb on - strand, within Psyr_4171at 4961.455 kb on - strand, within Psyr_4171at 4961.455 kb on - strand, within Psyr_4171at 4961.455 kb on - strand, within Psyr_4171at 4961.455 kb on - strand, within Psyr_4171at 4961.458 kb on + strand, within Psyr_4171at 4961.458 kb on + strand, within Psyr_4171at 4961.458 kb on + strand, within Psyr_4171at 4961.458 kb on + strand, within Psyr_4171at 4961.458 kb on + strand, within Psyr_4171at 4961.459 kb on - strand, within Psyr_4171at 4961.459 kb on - strand, within Psyr_4171at 4961.459 kb on - strand, within Psyr_4171at 4961.898 kb on - strandat 4961.898 kb on - strandat 4961.898 kb on - strandat 4961.898 kb on - strandat 4961.986 kb on - strandat 4961.996 kb on + strandat 4961.997 kb on - strandat 4962.007 kb on + strandat 4962.008 kb on - strandat 4962.008 kb on - strandat 4962.008 kb on - strandat 4962.008 kb on - strandat 4962.086 kb on - strandat 4962.086 kb on - strandat 4962.086 kb on - strandat 4962.360 kb on + strand, within Psyr_4172at 4962.360 kb on + strand, within Psyr_4172at 4962.360 kb on + strand, within Psyr_4172at 4962.360 kb on + strand, within Psyr_4172at 4962.360 kb on + strand, within Psyr_4172at 4962.361 kb on - strand, within Psyr_4172at 4962.361 kb on - strand, within Psyr_4172at 4962.361 kb on - strand, within Psyr_4172at 4962.411 kb on + strand, within Psyr_4172at 4962.411 kb on + strand, within Psyr_4172at 4962.411 kb on + strand, within Psyr_4172at 4962.411 kb on + strand, within Psyr_4172at 4962.411 kb on + strand, within Psyr_4172at 4962.412 kb on - strand, within Psyr_4172at 4962.412 kb on - strand, within Psyr_4172at 4962.412 kb on - strand, within Psyr_4172at 4962.412 kb on - strand, within Psyr_4172at 4962.585 kb on + strand, within Psyr_4172at 4962.732 kb on + strand, within Psyr_4172at 4962.801 kb on + strand, within Psyr_4172at 4962.802 kb on - strand, within Psyr_4172at 4962.802 kb on - strand, within Psyr_4172at 4962.802 kb on - strand, within Psyr_4172at 4962.802 kb on - strand, within Psyr_4172at 4962.802 kb on - strand, within Psyr_4172at 4962.825 kb on + strand, within Psyr_4172at 4962.826 kb on - strand, within Psyr_4172at 4962.826 kb on - strand, within Psyr_4172at 4963.085 kb on + strandat 4963.138 kb on - strandat 4963.165 kb on - strandat 4963.210 kb on - strandat 4963.302 kb on + strandat 4963.303 kb on - strandat 4963.303 kb on - strandat 4963.371 kb on + strandat 4963.372 kb on - strandat 4963.491 kb on + strandat 4963.491 kb on + strandat 4963.491 kb on + strandat 4963.704 kb on + strand, within Psyr_4173at 4963.752 kb on + strand, within Psyr_4173at 4963.753 kb on - strand, within Psyr_4173at 4963.753 kb on - strand, within Psyr_4173at 4963.938 kb on + strand, within Psyr_4173at 4963.938 kb on + strand, within Psyr_4173at 4963.938 kb on + strand, within Psyr_4173at 4963.938 kb on + strand, within Psyr_4173at 4963.938 kb on + strand, within Psyr_4173at 4963.939 kb on - strand, within Psyr_4173at 4963.939 kb on - strand, within Psyr_4173at 4963.998 kb on + strand, within Psyr_4173at 4963.998 kb on + strand, within Psyr_4173at 4963.998 kb on + strand, within Psyr_4173at 4963.999 kb on - strand, within Psyr_4173at 4963.999 kb on - strand, within Psyr_4173

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Ferulic Acid 180 ug/ml
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4,961,110 - Psyr_4171 0.47 -1.7
4,961,158 - Psyr_4171 0.50 +1.0
4,961,158 - Psyr_4171 0.50 -0.3
4,961,158 - Psyr_4171 0.50 -1.2
4,961,275 - Psyr_4171 0.57 -0.6
4,961,292 + Psyr_4171 0.58 +2.6
4,961,397 + Psyr_4171 0.65 -0.7
4,961,397 + Psyr_4171 0.65 -0.8
4,961,397 + Psyr_4171 0.65 -0.7
4,961,398 - Psyr_4171 0.65 -1.2
4,961,398 - Psyr_4171 0.65 +1.3
4,961,454 + Psyr_4171 0.69 -2.6
4,961,454 + Psyr_4171 0.69 -0.9
4,961,454 + Psyr_4171 0.69 +1.4
4,961,454 + Psyr_4171 0.69 -1.3
4,961,454 + Psyr_4171 0.69 -2.2
4,961,454 + Psyr_4171 0.69 +0.8
4,961,454 + Psyr_4171 0.69 -1.7
4,961,454 + Psyr_4171 0.69 +0.3
4,961,455 - +0.8
4,961,455 - Psyr_4171 0.69 -0.0
4,961,455 - Psyr_4171 0.69 +0.3
4,961,455 - Psyr_4171 0.69 +0.8
4,961,455 - Psyr_4171 0.69 -0.2
4,961,455 - Psyr_4171 0.69 -0.5
4,961,455 - Psyr_4171 0.69 -0.0
4,961,455 - Psyr_4171 0.69 -0.7
4,961,455 - Psyr_4171 0.69 -0.2
4,961,455 - Psyr_4171 0.69 +0.1
4,961,458 + Psyr_4171 0.69 +0.4
4,961,458 + Psyr_4171 0.69 +1.3
4,961,458 + Psyr_4171 0.69 +2.0
4,961,458 + Psyr_4171 0.69 -0.9
4,961,458 + Psyr_4171 0.69 +0.3
4,961,459 - Psyr_4171 0.69 -0.4
4,961,459 - Psyr_4171 0.69 +1.5
4,961,459 - Psyr_4171 0.69 +2.8
4,961,898 - -2.1
4,961,898 - -0.5
4,961,898 - -2.7
4,961,898 - +1.9
4,961,986 - +0.1
4,961,996 + -0.3
4,961,997 - -2.0
4,962,007 + -2.6
4,962,008 - -0.9
4,962,008 - +0.7
4,962,008 - -0.1
4,962,008 - -1.0
4,962,086 - +2.0
4,962,086 - +0.3
4,962,086 - +1.7
4,962,360 + Psyr_4172 0.25 +0.3
4,962,360 + Psyr_4172 0.25 +1.5
4,962,360 + Psyr_4172 0.25 -0.6
4,962,360 + Psyr_4172 0.25 -0.7
4,962,360 + Psyr_4172 0.25 +0.8
4,962,361 - Psyr_4172 0.25 -0.2
4,962,361 - Psyr_4172 0.25 +1.1
4,962,361 - Psyr_4172 0.25 +1.2
4,962,411 + Psyr_4172 0.30 +0.1
4,962,411 + Psyr_4172 0.30 +0.2
4,962,411 + Psyr_4172 0.30 -1.3
4,962,411 + Psyr_4172 0.30 -0.2
4,962,411 + Psyr_4172 0.30 -1.2
4,962,412 - Psyr_4172 0.30 -0.1
4,962,412 - Psyr_4172 0.30 -1.9
4,962,412 - Psyr_4172 0.30 +1.0
4,962,412 - Psyr_4172 0.30 +0.5
4,962,585 + Psyr_4172 0.47 +1.9
4,962,732 + Psyr_4172 0.61 -0.4
4,962,801 + Psyr_4172 0.68 -1.2
4,962,802 - Psyr_4172 0.68 -0.7
4,962,802 - Psyr_4172 0.68 +0.5
4,962,802 - Psyr_4172 0.68 +2.0
4,962,802 - Psyr_4172 0.68 +1.2
4,962,802 - Psyr_4172 0.68 +0.8
4,962,825 + Psyr_4172 0.71 -0.2
4,962,826 - Psyr_4172 0.71 +1.0
4,962,826 - Psyr_4172 0.71 -0.4
4,963,085 + +2.2
4,963,138 - -0.4
4,963,165 - +0.1
4,963,210 - -2.7
4,963,302 + -1.1
4,963,303 - +0.5
4,963,303 - +0.3
4,963,371 + +0.1
4,963,372 - +0.1
4,963,491 + +0.7
4,963,491 + +1.0
4,963,491 + -0.9
4,963,704 + Psyr_4173 0.17 +2.3
4,963,752 + Psyr_4173 0.18 -3.1
4,963,753 - Psyr_4173 0.18 +1.2
4,963,753 - Psyr_4173 0.18 +1.2
4,963,938 + Psyr_4173 0.24 -0.2
4,963,938 + Psyr_4173 0.24 +0.4
4,963,938 + Psyr_4173 0.24 -0.1
4,963,938 + Psyr_4173 0.24 +0.5
4,963,938 + Psyr_4173 0.24 -2.9
4,963,939 - Psyr_4173 0.24 +0.8
4,963,939 - Psyr_4173 0.24 -1.0
4,963,998 + Psyr_4173 0.26 -0.2
4,963,998 + Psyr_4173 0.26 -1.2
4,963,998 + Psyr_4173 0.26 -0.6
4,963,999 - Psyr_4173 0.26 -2.5
4,963,999 - Psyr_4173 0.26 +2.4

Or see this region's nucleotide sequence