Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3985

Experiment: KB with Naringin 250 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_3984 and Psyr_3985 are separated by 111 nucleotidesPsyr_3985 and Psyr_3986 are separated by 118 nucleotidesPsyr_3986 and Psyr_3987 are separated by 24 nucleotides Psyr_3984: Psyr_3984 - DNA helicase related protein, at 4,739,638 to 4,742,901 _3984 Psyr_3985: Psyr_3985 - Pectate lyase/Amb allergen, at 4,743,013 to 4,744,278 _3985 Psyr_3986: Psyr_3986 - GCN5-related N-acetyltransferase, at 4,744,397 to 4,744,843 _3986 Psyr_3987: Psyr_3987 - Iron-containing alcohol dehydrogenase, at 4,744,868 to 4,746,016 _3987 Position (kb) 4743 4744 4745Strain fitness (log2 ratio) -2 -1 0 1 2at 4742.100 kb on + strand, within Psyr_3984at 4742.100 kb on + strand, within Psyr_3984at 4742.108 kb on + strand, within Psyr_3984at 4742.108 kb on + strand, within Psyr_3984at 4742.190 kb on - strand, within Psyr_3984at 4742.199 kb on - strand, within Psyr_3984at 4742.339 kb on + strand, within Psyr_3984at 4742.340 kb on - strand, within Psyr_3984at 4742.340 kb on - strand, within Psyr_3984at 4742.425 kb on + strand, within Psyr_3984at 4742.426 kb on - strand, within Psyr_3984at 4742.426 kb on - strand, within Psyr_3984at 4742.645 kb on + strandat 4742.645 kb on + strandat 4742.645 kb on + strandat 4742.646 kb on - strandat 4742.646 kb on - strandat 4742.646 kb on - strandat 4742.646 kb on - strandat 4742.685 kb on - strandat 4742.685 kb on - strandat 4742.696 kb on + strandat 4742.696 kb on + strandat 4742.696 kb on + strandat 4742.696 kb on + strandat 4742.696 kb on + strandat 4742.696 kb on + strandat 4742.696 kb on + strandat 4742.696 kb on + strandat 4742.697 kb on - strandat 4742.786 kb on - strandat 4742.786 kb on - strandat 4742.939 kb on + strandat 4742.939 kb on + strandat 4742.939 kb on + strandat 4742.946 kb on + strandat 4742.946 kb on + strandat 4742.946 kb on + strandat 4742.946 kb on + strandat 4742.947 kb on - strandat 4742.959 kb on - strandat 4742.968 kb on + strandat 4742.968 kb on + strandat 4742.971 kb on + strandat 4742.971 kb on + strandat 4743.104 kb on + strandat 4743.105 kb on - strandat 4743.371 kb on + strand, within Psyr_3985at 4743.371 kb on + strand, within Psyr_3985at 4743.371 kb on + strand, within Psyr_3985at 4743.371 kb on + strand, within Psyr_3985at 4743.371 kb on + strand, within Psyr_3985at 4743.371 kb on + strand, within Psyr_3985at 4743.372 kb on - strand, within Psyr_3985at 4743.372 kb on - strand, within Psyr_3985at 4743.372 kb on - strand, within Psyr_3985at 4743.372 kb on - strand, within Psyr_3985at 4743.372 kb on - strand, within Psyr_3985at 4743.372 kb on - strand, within Psyr_3985at 4743.372 kb on - strand, within Psyr_3985at 4743.466 kb on + strand, within Psyr_3985at 4743.466 kb on + strand, within Psyr_3985at 4743.466 kb on + strand, within Psyr_3985at 4743.466 kb on + strand, within Psyr_3985at 4743.466 kb on + strand, within Psyr_3985at 4743.467 kb on - strand, within Psyr_3985at 4743.467 kb on - strand, within Psyr_3985at 4743.467 kb on - strand, within Psyr_3985at 4743.467 kb on - strand, within Psyr_3985at 4743.467 kb on - strand, within Psyr_3985at 4743.467 kb on - strand, within Psyr_3985at 4743.467 kb on - strand, within Psyr_3985at 4743.467 kb on - strand, within Psyr_3985at 4743.467 kb on - strand, within Psyr_3985at 4743.467 kb on - strand, within Psyr_3985at 4743.467 kb on - strand, within Psyr_3985at 4743.470 kb on + strand, within Psyr_3985at 4743.470 kb on + strand, within Psyr_3985at 4743.470 kb on + strand, within Psyr_3985at 4743.470 kb on + strand, within Psyr_3985at 4743.470 kb on + strand, within Psyr_3985at 4743.470 kb on + strand, within Psyr_3985at 4743.470 kb on + strand, within Psyr_3985at 4743.471 kb on - strand, within Psyr_3985at 4743.471 kb on - strand, within Psyr_3985at 4743.471 kb on - strand, within Psyr_3985at 4743.471 kb on - strand, within Psyr_3985at 4743.552 kb on - strand, within Psyr_3985at 4743.869 kb on + strand, within Psyr_3985at 4743.870 kb on - strand, within Psyr_3985at 4743.870 kb on - strand, within Psyr_3985at 4743.870 kb on - strand, within Psyr_3985at 4743.996 kb on + strand, within Psyr_3985at 4744.378 kb on + strandat 4744.379 kb on - strandat 4744.379 kb on - strandat 4744.453 kb on + strand, within Psyr_3986at 4744.488 kb on + strand, within Psyr_3986at 4744.489 kb on - strand, within Psyr_3986at 4744.489 kb on - strand, within Psyr_3986at 4744.707 kb on + strand, within Psyr_3986at 4744.707 kb on + strand, within Psyr_3986at 4744.707 kb on + strand, within Psyr_3986at 4744.708 kb on - strand, within Psyr_3986at 4744.767 kb on + strand, within Psyr_3986at 4744.792 kb on + strand, within Psyr_3986at 4744.858 kb on - strandat 4744.858 kb on - strandat 4744.886 kb on + strandat 4744.886 kb on + strandat 4744.886 kb on + strandat 4744.886 kb on + strandat 4744.886 kb on + strandat 4744.886 kb on + strandat 4744.887 kb on - strandat 4744.887 kb on - strandat 4744.887 kb on - strandat 4744.887 kb on - strandat 4744.889 kb on - strandat 4744.889 kb on - strandat 4744.996 kb on + strand, within Psyr_3987at 4745.203 kb on - strand, within Psyr_3987at 4745.203 kb on - strand, within Psyr_3987at 4745.239 kb on - strand, within Psyr_3987

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Naringin 250 ug/ml
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4,742,100 + Psyr_3984 0.75 -0.7
4,742,100 + Psyr_3984 0.75 +1.4
4,742,108 + Psyr_3984 0.76 -1.9
4,742,108 + Psyr_3984 0.76 -0.1
4,742,190 - Psyr_3984 0.78 -0.4
4,742,199 - Psyr_3984 0.78 -0.5
4,742,339 + Psyr_3984 0.83 -0.3
4,742,340 - Psyr_3984 0.83 +0.5
4,742,340 - Psyr_3984 0.83 +0.9
4,742,425 + Psyr_3984 0.85 -2.5
4,742,426 - Psyr_3984 0.85 -0.9
4,742,426 - Psyr_3984 0.85 -1.5
4,742,645 + +0.8
4,742,645 + +1.1
4,742,645 + -0.7
4,742,646 - -0.8
4,742,646 - -0.4
4,742,646 - -0.0
4,742,646 - -1.5
4,742,685 - -0.3
4,742,685 - -0.1
4,742,696 + +1.6
4,742,696 + +0.7
4,742,696 + -0.3
4,742,696 + -0.6
4,742,696 + -0.8
4,742,696 + +1.1
4,742,696 + -0.8
4,742,696 + +1.1
4,742,697 - -0.1
4,742,786 - +0.9
4,742,786 - +1.9
4,742,939 + +1.0
4,742,939 + -0.6
4,742,939 + -0.3
4,742,946 + +1.6
4,742,946 + +0.0
4,742,946 + -0.4
4,742,946 + +1.3
4,742,947 - +0.6
4,742,959 - +0.2
4,742,968 + -0.3
4,742,968 + +1.5
4,742,971 + -0.5
4,742,971 + +0.3
4,743,104 + -1.0
4,743,105 - -0.1
4,743,371 + Psyr_3985 0.28 +0.1
4,743,371 + Psyr_3985 0.28 -0.4
4,743,371 + Psyr_3985 0.28 +0.8
4,743,371 + Psyr_3985 0.28 -0.5
4,743,371 + Psyr_3985 0.28 -0.3
4,743,371 + Psyr_3985 0.28 -0.9
4,743,372 - Psyr_3985 0.28 -0.5
4,743,372 - Psyr_3985 0.28 +0.1
4,743,372 - Psyr_3985 0.28 +0.6
4,743,372 - Psyr_3985 0.28 -0.8
4,743,372 - Psyr_3985 0.28 +1.0
4,743,372 - Psyr_3985 0.28 -0.5
4,743,372 - Psyr_3985 0.28 +1.8
4,743,466 + Psyr_3985 0.36 +0.8
4,743,466 + Psyr_3985 0.36 +0.3
4,743,466 + Psyr_3985 0.36 +1.5
4,743,466 + Psyr_3985 0.36 +1.5
4,743,466 + Psyr_3985 0.36 +0.5
4,743,467 - Psyr_3985 0.36 +0.4
4,743,467 - Psyr_3985 0.36 +0.0
4,743,467 - Psyr_3985 0.36 -1.0
4,743,467 - Psyr_3985 0.36 +0.4
4,743,467 - Psyr_3985 0.36 -1.0
4,743,467 - Psyr_3985 0.36 -0.4
4,743,467 - Psyr_3985 0.36 -0.5
4,743,467 - Psyr_3985 0.36 +0.8
4,743,467 - Psyr_3985 0.36 -1.5
4,743,467 - Psyr_3985 0.36 -0.3
4,743,467 - Psyr_3985 0.36 +0.3
4,743,470 + Psyr_3985 0.36 -0.2
4,743,470 + Psyr_3985 0.36 -0.5
4,743,470 + Psyr_3985 0.36 -0.5
4,743,470 + Psyr_3985 0.36 +0.2
4,743,470 + Psyr_3985 0.36 +0.3
4,743,470 + Psyr_3985 0.36 -1.5
4,743,470 + Psyr_3985 0.36 -0.1
4,743,471 - Psyr_3985 0.36 -0.3
4,743,471 - Psyr_3985 0.36 -0.7
4,743,471 - Psyr_3985 0.36 -0.5
4,743,471 - Psyr_3985 0.36 +1.7
4,743,552 - Psyr_3985 0.43 -1.5
4,743,869 + Psyr_3985 0.68 +0.3
4,743,870 - Psyr_3985 0.68 -0.0
4,743,870 - Psyr_3985 0.68 -0.7
4,743,870 - Psyr_3985 0.68 +0.6
4,743,996 + Psyr_3985 0.78 -1.5
4,744,378 + -0.4
4,744,379 - +1.1
4,744,379 - +0.5
4,744,453 + Psyr_3986 0.13 +0.3
4,744,488 + Psyr_3986 0.20 +1.2
4,744,489 - Psyr_3986 0.21 -0.7
4,744,489 - Psyr_3986 0.21 -0.1
4,744,707 + Psyr_3986 0.69 +0.7
4,744,707 + Psyr_3986 0.69 +2.7
4,744,707 + Psyr_3986 0.69 -1.4
4,744,708 - Psyr_3986 0.70 +0.8
4,744,767 + Psyr_3986 0.83 +0.8
4,744,792 + Psyr_3986 0.88 -0.3
4,744,858 - +0.2
4,744,858 - +0.9
4,744,886 + +0.5
4,744,886 + +0.1
4,744,886 + -1.3
4,744,886 + +0.6
4,744,886 + +2.6
4,744,886 + +1.0
4,744,887 - -0.2
4,744,887 - -0.2
4,744,887 - +0.1
4,744,887 - +0.7
4,744,889 - +0.2
4,744,889 - -0.6
4,744,996 + Psyr_3987 0.11 +0.0
4,745,203 - Psyr_3987 0.29 +0.9
4,745,203 - Psyr_3987 0.29 -0.8
4,745,239 - Psyr_3987 0.32 -0.4

Or see this region's nucleotide sequence