Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4419

Experiment: KB with Fusaric 250 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_4418 and Psyr_4419 overlap by 1 nucleotidesPsyr_4419 and Psyr_4420 overlap by 4 nucleotides Psyr_4418: Psyr_4418 - Precorrin-6Y C5,15-methyltransferase (decarboxylating), at 5,282,096 to 5,283,298 _4418 Psyr_4419: Psyr_4419 - Cobalamin (vitamin B12) biosynthesis CbiD protein, at 5,283,298 to 5,284,410 _4419 Psyr_4420: Psyr_4420 - precorrin-6A reductase, at 5,284,407 to 5,285,147 _4420 Position (kb) 5283 5284 5285Strain fitness (log2 ratio) -2 -1 0 1 2at 5282.408 kb on + strand, within Psyr_4418at 5282.408 kb on + strand, within Psyr_4418at 5282.409 kb on - strand, within Psyr_4418at 5282.409 kb on - strand, within Psyr_4418at 5282.803 kb on - strand, within Psyr_4418at 5283.208 kb on + strandat 5283.591 kb on - strand, within Psyr_4419at 5283.727 kb on + strand, within Psyr_4419at 5283.728 kb on - strand, within Psyr_4419at 5283.728 kb on - strand, within Psyr_4419at 5283.871 kb on + strand, within Psyr_4419at 5283.871 kb on + strand, within Psyr_4419at 5283.871 kb on + strand, within Psyr_4419at 5283.871 kb on + strand, within Psyr_4419at 5283.871 kb on + strand, within Psyr_4419at 5283.872 kb on - strand, within Psyr_4419at 5283.872 kb on - strand, within Psyr_4419at 5283.872 kb on - strand, within Psyr_4419at 5283.872 kb on - strand, within Psyr_4419at 5283.874 kb on - strand, within Psyr_4419at 5283.977 kb on - strand, within Psyr_4419at 5284.482 kb on + strand, within Psyr_4420at 5284.483 kb on - strand, within Psyr_4420at 5284.483 kb on - strand, within Psyr_4420at 5284.483 kb on - strand, within Psyr_4420at 5284.483 kb on - strand, within Psyr_4420at 5284.483 kb on - strand, within Psyr_4420at 5284.572 kb on + strand, within Psyr_4420at 5284.572 kb on + strand, within Psyr_4420at 5284.572 kb on + strand, within Psyr_4420at 5284.572 kb on + strand, within Psyr_4420at 5284.572 kb on + strand, within Psyr_4420at 5284.572 kb on + strand, within Psyr_4420at 5284.573 kb on - strand, within Psyr_4420at 5284.573 kb on - strand, within Psyr_4420at 5284.573 kb on - strand, within Psyr_4420at 5284.573 kb on - strand, within Psyr_4420at 5284.963 kb on + strand, within Psyr_4420at 5285.288 kb on + strandat 5285.288 kb on + strandat 5285.288 kb on + strandat 5285.288 kb on + strandat 5285.288 kb on + strandat 5285.288 kb on + strandat 5285.288 kb on + strandat 5285.288 kb on + strandat 5285.288 kb on + strandat 5285.288 kb on + strandat 5285.288 kb on + strandat 5285.288 kb on + strandat 5285.288 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Fusaric 250 ug/ml
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5,282,408 + Psyr_4418 0.26 +2.0
5,282,408 + Psyr_4418 0.26 +0.3
5,282,409 - Psyr_4418 0.26 +0.1
5,282,409 - Psyr_4418 0.26 -0.1
5,282,803 - Psyr_4418 0.59 +1.5
5,283,208 + +0.8
5,283,591 - Psyr_4419 0.26 +1.3
5,283,727 + Psyr_4419 0.39 -0.4
5,283,728 - Psyr_4419 0.39 -0.9
5,283,728 - Psyr_4419 0.39 -1.5
5,283,871 + Psyr_4419 0.51 +1.0
5,283,871 + Psyr_4419 0.51 +0.3
5,283,871 + Psyr_4419 0.51 -0.2
5,283,871 + Psyr_4419 0.51 +0.5
5,283,871 + Psyr_4419 0.51 -0.9
5,283,872 - Psyr_4419 0.52 +1.5
5,283,872 - Psyr_4419 0.52 +1.4
5,283,872 - Psyr_4419 0.52 +1.7
5,283,872 - Psyr_4419 0.52 +0.7
5,283,874 - Psyr_4419 0.52 +0.7
5,283,977 - Psyr_4419 0.61 +0.3
5,284,482 + Psyr_4420 0.10 +0.0
5,284,483 - Psyr_4420 0.10 +0.7
5,284,483 - Psyr_4420 0.10 +0.3
5,284,483 - Psyr_4420 0.10 +1.7
5,284,483 - Psyr_4420 0.10 +0.0
5,284,483 - Psyr_4420 0.10 -1.2
5,284,572 + Psyr_4420 0.22 +0.1
5,284,572 + Psyr_4420 0.22 +1.6
5,284,572 + Psyr_4420 0.22 +2.3
5,284,572 + Psyr_4420 0.22 +1.7
5,284,572 + Psyr_4420 0.22 +0.3
5,284,572 + Psyr_4420 0.22 +2.5
5,284,573 - Psyr_4420 0.22 +2.6
5,284,573 - Psyr_4420 0.22 -0.6
5,284,573 - Psyr_4420 0.22 +0.0
5,284,573 - Psyr_4420 0.22 -0.2
5,284,963 + Psyr_4420 0.75 -0.8
5,285,288 + +0.0
5,285,288 + -0.2
5,285,288 + -0.5
5,285,288 + -1.9
5,285,288 + +0.0
5,285,288 + +0.1
5,285,288 + -0.2
5,285,288 + +0.6
5,285,288 + -0.9
5,285,288 + +0.1
5,285,288 + -1.0
5,285,288 + +0.5
5,285,288 + +0.1

Or see this region's nucleotide sequence