Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1323

Experiment: KB with Methanol 5 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_1321 and Psyr_1322 are separated by 2 nucleotidesPsyr_1322 and Psyr_1323 are separated by 133 nucleotidesPsyr_1323 and Psyr_1324 are separated by 36 nucleotidesPsyr_1324 and Psyr_1325 are separated by 96 nucleotides Psyr_1321: Psyr_1321 - conserved hypothetical protein, at 1,499,729 to 1,500,040 _1321 Psyr_1322: Psyr_1322 - Protein of unknown function DUF72, at 1,500,043 to 1,500,906 _1322 Psyr_1323: Psyr_1323 - Extensin-like, C-terminal, at 1,501,040 to 1,501,729 _1323 Psyr_1324: Psyr_1324 - conserved hypothetical protein, at 1,501,766 to 1,502,389 _1324 Psyr_1325: Psyr_1325 - Protein of unknown function DUF548, at 1,502,486 to 1,503,295 _1325 Position (kb) 1501 1502Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 1500.059 kb on - strandat 1500.061 kb on + strandat 1500.061 kb on + strandat 1500.061 kb on + strandat 1500.062 kb on - strandat 1500.149 kb on - strand, within Psyr_1322at 1500.149 kb on - strand, within Psyr_1322at 1500.190 kb on + strand, within Psyr_1322at 1500.190 kb on + strand, within Psyr_1322at 1500.190 kb on + strand, within Psyr_1322at 1500.190 kb on + strand, within Psyr_1322at 1500.191 kb on - strand, within Psyr_1322at 1500.191 kb on - strand, within Psyr_1322at 1500.191 kb on - strand, within Psyr_1322at 1500.191 kb on - strand, within Psyr_1322at 1500.233 kb on + strand, within Psyr_1322at 1500.234 kb on - strand, within Psyr_1322at 1500.234 kb on - strand, within Psyr_1322at 1500.271 kb on - strand, within Psyr_1322at 1500.450 kb on - strand, within Psyr_1322at 1500.761 kb on - strand, within Psyr_1322at 1500.761 kb on - strand, within Psyr_1322at 1500.957 kb on - strandat 1501.056 kb on + strandat 1501.057 kb on - strandat 1501.178 kb on + strand, within Psyr_1323at 1501.178 kb on + strand, within Psyr_1323at 1501.178 kb on + strand, within Psyr_1323at 1501.178 kb on + strand, within Psyr_1323at 1501.178 kb on + strand, within Psyr_1323at 1501.179 kb on - strand, within Psyr_1323at 1501.179 kb on - strand, within Psyr_1323at 1501.179 kb on - strand, within Psyr_1323at 1501.297 kb on + strand, within Psyr_1323at 1501.298 kb on - strand, within Psyr_1323at 1501.377 kb on + strand, within Psyr_1323at 1501.377 kb on + strand, within Psyr_1323at 1501.378 kb on - strand, within Psyr_1323at 1501.378 kb on - strand, within Psyr_1323at 1501.471 kb on + strand, within Psyr_1323at 1501.472 kb on - strand, within Psyr_1323at 1501.472 kb on - strand, within Psyr_1323at 1501.472 kb on - strand, within Psyr_1323at 1501.472 kb on - strand, within Psyr_1323at 1501.472 kb on - strand, within Psyr_1323at 1501.475 kb on + strand, within Psyr_1323at 1501.475 kb on + strand, within Psyr_1323at 1501.475 kb on + strand, within Psyr_1323at 1501.475 kb on + strand, within Psyr_1323at 1501.475 kb on + strand, within Psyr_1323at 1501.475 kb on + strand, within Psyr_1323at 1501.475 kb on + strand, within Psyr_1323at 1501.475 kb on + strand, within Psyr_1323at 1501.475 kb on + strand, within Psyr_1323at 1501.475 kb on + strand, within Psyr_1323at 1501.476 kb on - strand, within Psyr_1323at 1501.476 kb on - strand, within Psyr_1323at 1501.572 kb on + strand, within Psyr_1323at 1501.573 kb on - strand, within Psyr_1323at 1501.573 kb on - strand, within Psyr_1323at 1501.573 kb on - strand, within Psyr_1323at 1501.648 kb on + strand, within Psyr_1323at 1501.667 kb on + strandat 1501.667 kb on + strandat 1501.668 kb on - strandat 1501.668 kb on - strandat 1501.767 kb on + strandat 1501.767 kb on + strandat 1501.768 kb on - strandat 1502.146 kb on + strand, within Psyr_1324at 1502.146 kb on + strand, within Psyr_1324at 1502.146 kb on + strand, within Psyr_1324at 1502.146 kb on + strand, within Psyr_1324at 1502.146 kb on + strand, within Psyr_1324at 1502.147 kb on - strand, within Psyr_1324at 1502.147 kb on - strand, within Psyr_1324at 1502.204 kb on + strand, within Psyr_1324at 1502.204 kb on + strand, within Psyr_1324at 1502.204 kb on + strand, within Psyr_1324at 1502.205 kb on - strand, within Psyr_1324at 1502.205 kb on - strand, within Psyr_1324at 1502.205 kb on - strand, within Psyr_1324at 1502.205 kb on - strand, within Psyr_1324at 1502.205 kb on - strand, within Psyr_1324at 1502.205 kb on - strand, within Psyr_1324at 1502.358 kb on + strandat 1502.389 kb on + strandat 1502.389 kb on + strandat 1502.389 kb on + strandat 1502.390 kb on - strandat 1502.390 kb on - strandat 1502.399 kb on + strandat 1502.400 kb on - strandat 1502.429 kb on + strandat 1502.460 kb on + strandat 1502.479 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Methanol 5 vol%
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1,500,059 - -0.3
1,500,061 + +0.3
1,500,061 + +0.7
1,500,061 + -1.3
1,500,062 - +1.9
1,500,149 - Psyr_1322 0.12 -2.6
1,500,149 - Psyr_1322 0.12 -1.2
1,500,190 + Psyr_1322 0.17 +0.9
1,500,190 + Psyr_1322 0.17 -1.3
1,500,190 + Psyr_1322 0.17 +1.2
1,500,190 + Psyr_1322 0.17 -0.3
1,500,191 - Psyr_1322 0.17 -0.2
1,500,191 - Psyr_1322 0.17 -0.9
1,500,191 - Psyr_1322 0.17 -0.4
1,500,191 - Psyr_1322 0.17 -0.9
1,500,233 + Psyr_1322 0.22 -0.3
1,500,234 - Psyr_1322 0.22 +0.9
1,500,234 - Psyr_1322 0.22 +2.7
1,500,271 - Psyr_1322 0.26 +0.7
1,500,450 - Psyr_1322 0.47 +0.4
1,500,761 - Psyr_1322 0.83 -0.4
1,500,761 - Psyr_1322 0.83 -0.5
1,500,957 - +0.8
1,501,056 + -0.2
1,501,057 - +0.8
1,501,178 + Psyr_1323 0.20 -1.5
1,501,178 + Psyr_1323 0.20 -0.9
1,501,178 + Psyr_1323 0.20 -2.7
1,501,178 + Psyr_1323 0.20 +0.1
1,501,178 + Psyr_1323 0.20 +0.8
1,501,179 - Psyr_1323 0.20 +0.7
1,501,179 - Psyr_1323 0.20 +0.5
1,501,179 - Psyr_1323 0.20 -1.0
1,501,297 + Psyr_1323 0.37 -0.2
1,501,298 - Psyr_1323 0.37 -0.9
1,501,377 + Psyr_1323 0.49 +0.7
1,501,377 + Psyr_1323 0.49 +1.8
1,501,378 - Psyr_1323 0.49 +0.5
1,501,378 - Psyr_1323 0.49 +0.4
1,501,471 + Psyr_1323 0.62 +3.9
1,501,472 - Psyr_1323 0.63 +0.5
1,501,472 - Psyr_1323 0.63 -0.9
1,501,472 - Psyr_1323 0.63 +0.5
1,501,472 - Psyr_1323 0.63 +0.8
1,501,472 - Psyr_1323 0.63 +1.0
1,501,475 + Psyr_1323 0.63 +1.7
1,501,475 + Psyr_1323 0.63 -0.9
1,501,475 + Psyr_1323 0.63 +0.8
1,501,475 + Psyr_1323 0.63 +2.4
1,501,475 + Psyr_1323 0.63 +1.0
1,501,475 + Psyr_1323 0.63 -0.9
1,501,475 + Psyr_1323 0.63 -2.9
1,501,475 + Psyr_1323 0.63 +0.0
1,501,475 + Psyr_1323 0.63 +1.2
1,501,475 + Psyr_1323 0.63 -0.0
1,501,476 - Psyr_1323 0.63 +1.5
1,501,476 - Psyr_1323 0.63 +0.5
1,501,572 + Psyr_1323 0.77 -2.2
1,501,573 - Psyr_1323 0.77 -2.0
1,501,573 - Psyr_1323 0.77 +0.4
1,501,573 - Psyr_1323 0.77 +0.0
1,501,648 + Psyr_1323 0.88 -0.1
1,501,667 + +0.0
1,501,667 + -1.2
1,501,668 - -0.6
1,501,668 - +1.2
1,501,767 + +1.3
1,501,767 + +0.5
1,501,768 - -0.3
1,502,146 + Psyr_1324 0.61 +0.2
1,502,146 + Psyr_1324 0.61 +0.8
1,502,146 + Psyr_1324 0.61 +1.4
1,502,146 + Psyr_1324 0.61 +0.8
1,502,146 + Psyr_1324 0.61 -1.4
1,502,147 - Psyr_1324 0.61 -1.1
1,502,147 - Psyr_1324 0.61 -1.6
1,502,204 + Psyr_1324 0.70 -1.3
1,502,204 + Psyr_1324 0.70 +0.1
1,502,204 + Psyr_1324 0.70 -0.5
1,502,205 - Psyr_1324 0.70 -1.9
1,502,205 - Psyr_1324 0.70 -2.6
1,502,205 - Psyr_1324 0.70 +0.9
1,502,205 - Psyr_1324 0.70 -0.1
1,502,205 - Psyr_1324 0.70 +4.3
1,502,205 - Psyr_1324 0.70 -1.0
1,502,358 + +0.7
1,502,389 + -0.5
1,502,389 + +0.3
1,502,389 + -0.1
1,502,390 - +0.1
1,502,390 - -0.6
1,502,399 + +0.8
1,502,400 - -2.3
1,502,429 + -0.3
1,502,460 + -0.1
1,502,479 - +0.7

Or see this region's nucleotide sequence