Experiment: RCH2_defined_glucose with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v2, filtered and pH-adjusted 0.5 x; and 2,2'-Dipyridyl 50 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS16280 and BWI76_RS16285 are separated by 98 nucleotides BWI76_RS16285 and BWI76_RS16290 are separated by 25 nucleotides
BWI76_RS16280: BWI76_RS16280 - mannose-6-phosphate isomerase, at 3,378,527 to 3,379,705
_RS16280
BWI76_RS16285: BWI76_RS16285 - hypothetical protein, at 3,379,804 to 3,381,309
_RS16285
BWI76_RS16290: BWI76_RS16290 - Mal regulon transcriptional regulator MalI, at 3,381,335 to 3,382,363
_RS16290
Position (kb)
3379
3380
3381
3382 Strain fitness (log2 ratio)
-1
0
1 at 3378.812 kb on + strand, within BWI76_RS16280 at 3378.916 kb on + strand, within BWI76_RS16280 at 3379.465 kb on - strand, within BWI76_RS16280 at 3379.537 kb on + strand, within BWI76_RS16280 at 3379.933 kb on + strand at 3380.154 kb on + strand, within BWI76_RS16285 at 3380.167 kb on - strand, within BWI76_RS16285 at 3380.562 kb on + strand, within BWI76_RS16285 at 3380.622 kb on - strand, within BWI76_RS16285 at 3380.837 kb on - strand, within BWI76_RS16285 at 3380.850 kb on + strand, within BWI76_RS16285 at 3381.054 kb on - strand, within BWI76_RS16285 at 3381.077 kb on - strand, within BWI76_RS16285 at 3381.426 kb on - strand at 3381.444 kb on - strand, within BWI76_RS16290 at 3381.494 kb on - strand, within BWI76_RS16290 at 3381.580 kb on + strand, within BWI76_RS16290 at 3382.293 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_glucose with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v2, filtered and pH-adjusted 0.5 x; and 2,2'-Dipyridyl 50 uM remove 3,378,812 + BWI76_RS16280 0.24 -0.4 3,378,916 + BWI76_RS16280 0.33 -0.5 3,379,465 - BWI76_RS16280 0.80 -0.1 3,379,537 + BWI76_RS16280 0.86 -0.3 3,379,933 + +0.5 3,380,154 + BWI76_RS16285 0.23 +0.3 3,380,167 - BWI76_RS16285 0.24 +0.4 3,380,562 + BWI76_RS16285 0.50 +0.3 3,380,622 - BWI76_RS16285 0.54 -0.3 3,380,837 - BWI76_RS16285 0.69 +0.8 3,380,850 + BWI76_RS16285 0.69 +0.5 3,381,054 - BWI76_RS16285 0.83 +0.1 3,381,077 - BWI76_RS16285 0.85 +1.0 3,381,426 - +0.8 3,381,444 - BWI76_RS16290 0.11 -0.3 3,381,494 - BWI76_RS16290 0.15 -0.4 3,381,580 + BWI76_RS16290 0.24 +0.3 3,382,293 - -0.1
Or see this region's nucleotide sequence