Experiment: RCH2_defined_glucose with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v2, filtered and pH-adjusted 0.5 x; and 2,2'-Dipyridyl 50 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS12605 and BWI76_RS12610 are separated by 162 nucleotides BWI76_RS12610 and BWI76_RS12615 are separated by 65 nucleotides
BWI76_RS12605: BWI76_RS12605 - hypothetical protein, at 2,630,700 to 2,631,836
_RS12605
BWI76_RS12610: BWI76_RS12610 - LysR family transcriptional regulator, at 2,631,999 to 2,632,883
_RS12610
BWI76_RS12615: BWI76_RS12615 - LysR family transcriptional regulator, at 2,632,949 to 2,633,860
_RS12615
Position (kb)
2631
2632
2633 Strain fitness (log2 ratio)
-1
0
1 at 2631.151 kb on + strand, within BWI76_RS12605 at 2631.177 kb on + strand, within BWI76_RS12605 at 2631.637 kb on - strand, within BWI76_RS12605 at 2631.753 kb on + strand at 2631.778 kb on + strand at 2632.089 kb on - strand, within BWI76_RS12610 at 2632.100 kb on - strand, within BWI76_RS12610 at 2632.723 kb on - strand, within BWI76_RS12610 at 2632.908 kb on - strand at 2633.143 kb on - strand, within BWI76_RS12615 at 2633.145 kb on + strand, within BWI76_RS12615 at 2633.596 kb on + strand, within BWI76_RS12615 at 2633.609 kb on - strand, within BWI76_RS12615 at 2633.721 kb on + strand, within BWI76_RS12615 at 2633.726 kb on + strand, within BWI76_RS12615 at 2633.729 kb on - strand, within BWI76_RS12615
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_glucose with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v2, filtered and pH-adjusted 0.5 x; and 2,2'-Dipyridyl 50 uM remove 2,631,151 + BWI76_RS12605 0.40 -1.7 2,631,177 + BWI76_RS12605 0.42 +0.2 2,631,637 - BWI76_RS12605 0.82 -0.1 2,631,753 + -0.0 2,631,778 + -0.0 2,632,089 - BWI76_RS12610 0.10 +0.3 2,632,100 - BWI76_RS12610 0.11 +0.6 2,632,723 - BWI76_RS12610 0.82 +0.3 2,632,908 - +1.2 2,633,143 - BWI76_RS12615 0.21 +0.0 2,633,145 + BWI76_RS12615 0.21 +0.4 2,633,596 + BWI76_RS12615 0.71 +0.9 2,633,609 - BWI76_RS12615 0.72 +0.3 2,633,721 + BWI76_RS12615 0.85 -0.1 2,633,726 + BWI76_RS12615 0.85 +0.5 2,633,729 - BWI76_RS12615 0.86 +0.4
Or see this region's nucleotide sequence