Strain Fitness in Agrobacterium fabrum C58 around Atu3107

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu3106 and Atu3107 are separated by 118 nucleotidesAtu3107 and Atu3108 overlap by 8 nucleotides Atu3106: Atu3106 - sugar ABC transporter substrate-binding protein, at 114,351 to 115,637 Atu3106 Atu3107: Atu3107 - LacI family transcriptional regulator, at 115,756 to 116,817 Atu3107 Atu3108: Atu3108 - hypothetical protein, at 116,810 to 118,693 Atu3108 Position (kb) 115 116 117Strain fitness (log2 ratio) -1 0 1at 114.819 kb on - strand, within Atu3106at 114.819 kb on - strand, within Atu3106at 114.888 kb on - strand, within Atu3106at 115.069 kb on + strand, within Atu3106at 115.077 kb on - strand, within Atu3106at 115.077 kb on - strand, within Atu3106at 115.319 kb on - strand, within Atu3106at 115.427 kb on - strand, within Atu3106at 115.613 kb on + strandat 115.816 kb on + strandat 115.816 kb on + strandat 115.816 kb on + strandat 115.885 kb on - strand, within Atu3107at 116.048 kb on + strand, within Atu3107at 116.144 kb on + strand, within Atu3107at 116.201 kb on + strand, within Atu3107at 116.207 kb on - strand, within Atu3107at 116.209 kb on - strand, within Atu3107at 116.245 kb on + strand, within Atu3107at 116.255 kb on + strand, within Atu3107at 116.263 kb on - strand, within Atu3107at 116.435 kb on - strand, within Atu3107at 116.445 kb on - strand, within Atu3107at 116.447 kb on + strand, within Atu3107at 116.447 kb on + strand, within Atu3107at 116.447 kb on + strand, within Atu3107at 116.493 kb on + strand, within Atu3107at 116.547 kb on + strand, within Atu3107at 116.608 kb on + strand, within Atu3107at 116.616 kb on - strand, within Atu3107at 116.640 kb on + strand, within Atu3107at 116.654 kb on + strand, within Atu3107at 116.964 kb on + strandat 116.966 kb on - strandat 116.977 kb on - strandat 117.034 kb on + strand, within Atu3108at 117.212 kb on + strand, within Atu3108at 117.228 kb on - strand, within Atu3108at 117.243 kb on - strand, within Atu3108at 117.667 kb on - strand, within Atu3108at 117.678 kb on + strand, within Atu3108at 117.688 kb on + strand, within Atu3108at 117.696 kb on - strand, within Atu3108at 117.709 kb on + strand, within Atu3108at 117.722 kb on + strand, within Atu3108at 117.730 kb on - strand, within Atu3108at 117.765 kb on - strand, within Atu3108at 117.772 kb on - strand, within Atu3108at 117.786 kb on - strand, within Atu3108at 117.794 kb on - strand, within Atu3108

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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114,819 - Atu3106 0.36 -0.1
114,819 - Atu3106 0.36 +0.0
114,888 - Atu3106 0.42 -0.0
115,069 + Atu3106 0.56 -0.1
115,077 - Atu3106 0.56 +0.2
115,077 - Atu3106 0.56 -0.6
115,319 - Atu3106 0.75 +0.2
115,427 - Atu3106 0.84 +0.5
115,613 + -0.5
115,816 + -0.6
115,816 + +0.2
115,816 + +0.4
115,885 - Atu3107 0.12 -0.9
116,048 + Atu3107 0.27 -0.0
116,144 + Atu3107 0.37 -0.4
116,201 + Atu3107 0.42 -0.6
116,207 - Atu3107 0.42 -0.2
116,209 - Atu3107 0.43 -0.4
116,245 + Atu3107 0.46 -0.8
116,255 + Atu3107 0.47 -0.0
116,263 - Atu3107 0.48 +0.0
116,435 - Atu3107 0.64 +0.3
116,445 - Atu3107 0.65 -0.7
116,447 + Atu3107 0.65 +0.1
116,447 + Atu3107 0.65 -0.1
116,447 + Atu3107 0.65 +0.1
116,493 + Atu3107 0.69 +0.4
116,547 + Atu3107 0.74 -0.1
116,608 + Atu3107 0.80 -0.1
116,616 - Atu3107 0.81 +0.5
116,640 + Atu3107 0.83 -0.0
116,654 + Atu3107 0.85 -0.2
116,964 + +0.4
116,966 - -0.2
116,977 - +0.1
117,034 + Atu3108 0.12 -0.4
117,212 + Atu3108 0.21 +1.0
117,228 - Atu3108 0.22 +0.2
117,243 - Atu3108 0.23 -0.0
117,667 - Atu3108 0.45 +0.1
117,678 + Atu3108 0.46 +0.1
117,688 + Atu3108 0.47 -0.7
117,696 - Atu3108 0.47 +0.0
117,709 + Atu3108 0.48 +0.6
117,722 + Atu3108 0.48 -0.2
117,730 - Atu3108 0.49 -0.7
117,765 - Atu3108 0.51 -0.2
117,772 - Atu3108 0.51 -1.5
117,786 - Atu3108 0.52 +0.8
117,794 - Atu3108 0.52 +0.1

Or see this region's nucleotide sequence