Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS16765

Experiment: Stem-Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Atlantic
3,812,723	+		DDA3937_RS16760	0.16	-2.4
3,812,723	+		DDA3937_RS16760	0.16	-0.3
3,812,724	-		DDA3937_RS16760	0.17	-1.3
3,812,724	-		DDA3937_RS16760	0.17	-0.3
3,812,724	-		DDA3937_RS16760	0.17	-1.7
3,812,781	-		DDA3937_RS16760	0.21	-0.7
3,812,904	+		DDA3937_RS16760	0.32	-2.8
3,812,904	+		DDA3937_RS16760	0.32	-2.9
3,813,072	+		DDA3937_RS16760	0.46	-2.5
3,813,072	+		DDA3937_RS16760	0.46	-2.8
3,813,072	+		DDA3937_RS16760	0.46	-1.3
3,813,073	-		DDA3937_RS16760	0.46	-0.7
3,813,101	+		DDA3937_RS16760	0.49	-3.3
3,813,140	+		DDA3937_RS16760	0.52	-3.9
3,813,141	-		DDA3937_RS16760	0.52	+2.0
3,813,176	+		DDA3937_RS16760	0.55	-2.9
3,813,177	-		DDA3937_RS16760	0.55	-2.4
3,813,177	-		DDA3937_RS16760	0.55	-0.7
3,813,177	-		DDA3937_RS16760	0.55	-3.1
3,813,182	+		DDA3937_RS16760	0.56	-1.5
3,813,204	+		DDA3937_RS16760	0.57	-1.6
3,813,204	+		DDA3937_RS16760	0.57	-1.5
3,813,204	+		DDA3937_RS16760	0.57	+0.3
3,813,204	+		DDA3937_RS16760	0.57	+1.3
3,813,204	+		DDA3937_RS16760	0.57	-2.5
3,813,205	-		DDA3937_RS16760	0.57	-0.9
3,813,205	-		DDA3937_RS16760	0.57	-0.7
3,813,205	-		DDA3937_RS16760	0.57	-2.5
3,813,205	-		DDA3937_RS16760	0.57	-0.1
3,813,205	-		DDA3937_RS16760	0.57	-1.7
3,813,230	-		DDA3937_RS16760	0.60	-2.2
3,813,306	-		DDA3937_RS16760	0.66	-1.8
3,813,306	-		DDA3937_RS16760	0.66	-1.7
3,813,366	+		DDA3937_RS16760	0.71	-1.8
3,813,366	+		DDA3937_RS16760	0.71	-1.9
3,813,367	-				+0.3
3,813,384	+		DDA3937_RS16760	0.73	+1.3
3,813,385	-		DDA3937_RS16760	0.73	-2.4
3,813,400	+		DDA3937_RS16760	0.74	-1.0
3,813,401	-		DDA3937_RS16760	0.74	-1.0
3,813,497	+		DDA3937_RS16760	0.82	+1.2
3,813,498	-		DDA3937_RS16760	0.82	+1.1
3,813,498	-		DDA3937_RS16760	0.82	-1.8
3,813,498	-		DDA3937_RS16760	0.82	-2.8
3,813,498	-		DDA3937_RS16760	0.82	-1.0
3,813,498	-		DDA3937_RS16760	0.82	-1.0
3,813,498	-		DDA3937_RS16760	0.82	-0.5
3,813,561	-				-1.5
3,813,822	+				-2.1
3,813,822	+				-1.7
3,813,822	+				-1.0
3,813,822	+				-2.5
3,813,822	+				-1.5
3,813,822	+				-1.7
3,813,822	+				-1.5
3,813,823	-				-1.3
3,813,823	-				-2.5
3,813,823	-				-2.5
3,813,823	-				-3.5
3,813,823	-				-1.1
3,813,823	-				+1.3
3,813,823	-				-2.9
3,813,823	-				+1.7
3,813,823	-				-1.7
3,813,823	-				-2.4
3,813,823	-				-2.8
3,813,823	-				+0.3
3,813,823	-				-0.3
3,813,823	-				-2.4
3,813,823	-				-1.3
3,813,827	-				-2.0
3,813,827	-				-1.6
3,813,827	-				+0.4
3,813,827	-				-1.0
3,813,919	+		DDA3937_RS16765	0.13	-3.1
3,813,920	-		DDA3937_RS16765	0.13	-0.3
3,813,920	-		DDA3937_RS16765	0.13	-1.7
3,813,964	+		DDA3937_RS16765	0.16	-2.5
3,814,046	-		DDA3937_RS16765	0.21	+0.7
3,814,046	-		DDA3937_RS16765	0.21	-1.3
3,814,046	-		DDA3937_RS16765	0.21	-0.3
3,814,105	+		DDA3937_RS16765	0.25	-2.0
3,814,106	-		DDA3937_RS16765	0.25	-0.3
3,814,109	+		DDA3937_RS16765	0.25	-1.7
3,814,109	+		DDA3937_RS16765	0.25	-4.0
3,814,110	-		DDA3937_RS16765	0.25	-2.0
3,814,129	+		DDA3937_RS16765	0.27	-2.1
3,814,130	-		DDA3937_RS16765	0.27	-1.3
3,814,130	-		DDA3937_RS16765	0.27	-2.4
3,814,211	+		DDA3937_RS16765	0.32	-2.8
3,814,211	+		DDA3937_RS16765	0.32	-1.3
3,814,211	+		DDA3937_RS16765	0.32	-1.3
3,814,211	+				-0.7
3,814,212	-		DDA3937_RS16765	0.32	-3.3
3,814,212	-		DDA3937_RS16765	0.32	+2.1
3,814,212	-		DDA3937_RS16765	0.32	-2.3
3,814,234	+		DDA3937_RS16765	0.33	-1.3
3,814,235	-		DDA3937_RS16765	0.33	-0.8
3,814,235	-		DDA3937_RS16765	0.33	-3.1
3,814,235	-		DDA3937_RS16765	0.33	-2.7
3,814,235	-		DDA3937_RS16765	0.33	-0.1
3,814,235	-		DDA3937_RS16765	0.33	-1.8
3,814,235	-		DDA3937_RS16765	0.33	-2.0
3,814,237	+		DDA3937_RS16765	0.34	+0.3
3,814,242	+		DDA3937_RS16765	0.34	-1.1
3,814,243	-		DDA3937_RS16765	0.34	+0.7
3,814,243	-		DDA3937_RS16765	0.34	-0.0
3,814,248	+		DDA3937_RS16765	0.34	-1.5
3,814,249	-				-1.7
3,814,257	+		DDA3937_RS16765	0.35	-3.9
3,814,257	+		DDA3937_RS16765	0.35	-2.8
3,814,258	-		DDA3937_RS16765	0.35	+0.7
3,814,258	-		DDA3937_RS16765	0.35	-1.7
3,814,264	-		DDA3937_RS16765	0.35	-2.6
3,814,335	+		DDA3937_RS16765	0.40	-2.0
3,814,335	+		DDA3937_RS16765	0.40	-2.8
3,814,338	+		DDA3937_RS16765	0.40	-1.5
3,814,338	+		DDA3937_RS16765	0.40	-4.1
3,814,339	-		DDA3937_RS16765	0.40	-2.1
3,814,339	-		DDA3937_RS16765	0.40	-2.8
3,814,339	-		DDA3937_RS16765	0.40	-3.5
3,814,339	-		DDA3937_RS16765	0.40	-1.6
3,814,405	+		DDA3937_RS16765	0.45	-1.3
3,814,406	-		DDA3937_RS16765	0.45	+0.0
3,814,528	+		DDA3937_RS16765	0.53	-2.6
3,814,528	+		DDA3937_RS16765	0.53	-2.6
3,814,568	+		DDA3937_RS16765	0.55	-1.5
3,814,568	+		DDA3937_RS16765	0.55	-3.4
3,814,569	-		DDA3937_RS16765	0.55	-2.5
3,814,569	-		DDA3937_RS16765	0.55	-0.3
3,814,584	+		DDA3937_RS16765	0.56	-1.5
3,814,584	+		DDA3937_RS16765	0.56	-2.0
3,814,584	+		DDA3937_RS16765	0.56	-2.3
3,814,585	-		DDA3937_RS16765	0.56	-2.7
3,814,620	-		DDA3937_RS16765	0.59	-4.7
3,814,622	-		DDA3937_RS16765	0.59	-2.7
3,814,675	-		DDA3937_RS16765	0.62	-1.1
3,814,675	-		DDA3937_RS16765	0.62	-2.3
3,814,705	+		DDA3937_RS16765	0.64	-1.9
3,814,705	+				+0.3
3,814,706	-		DDA3937_RS16765	0.64	-0.6
3,814,706	-		DDA3937_RS16765	0.64	-0.2
3,814,706	-		DDA3937_RS16765	0.64	+1.3
3,814,706	-		DDA3937_RS16765	0.64	-1.5
3,814,741	+		DDA3937_RS16765	0.66	-1.5
3,814,742	-		DDA3937_RS16765	0.67	-1.5
3,814,748	+		DDA3937_RS16765	0.67	-1.8
3,814,748	+		DDA3937_RS16765	0.67	+0.4
3,814,749	-		DDA3937_RS16765	0.67	-2.1
3,814,775	+		DDA3937_RS16765	0.69	-1.0
3,814,936	+		DDA3937_RS16765	0.79	-3.8
3,814,937	-		DDA3937_RS16765	0.79	-3.1
3,814,937	-		DDA3937_RS16765	0.79	-0.9
3,815,033	+		DDA3937_RS16765	0.86	-1.2
3,815,033	+		DDA3937_RS16765	0.86	-2.3
3,815,034	-		DDA3937_RS16765	0.86	-1.4
3,815,057	+		DDA3937_RS16765	0.87	-1.5
3,815,057	+		DDA3937_RS16765	0.87	-0.8
3,815,058	-		DDA3937_RS16765	0.87	-1.8
3,815,058	-		DDA3937_RS16765	0.87	-1.8
3,815,058	-		DDA3937_RS16765	0.87	-2.4
3,815,058	-		DDA3937_RS16765	0.87	+0.3
3,815,105	+				-1.9
3,815,105	+				-1.3
3,815,105	+				-2.5
3,815,106	-				-3.3
3,815,257	+				-0.5
3,815,273	+				-0.7
3,815,273	+				+0.3
3,815,273	+				+0.7
3,815,273	+				+0.3
3,815,273	+				-0.1
3,815,273	+				+0.0
3,815,273	+				+0.3
3,815,273	+				-1.5
3,815,274	-				-0.4
3,815,274	-				-0.3
3,815,274	-				+0.0
3,815,274	-				-2.4
3,815,274	-				-1.5
3,815,274	-				-2.5
3,815,274	-				+1.3
3,815,278	+				-1.5
3,815,278	+				+1.7
3,815,279	-				-0.7
3,815,341	+				+2.1
3,815,341	+				-0.2
3,815,396	+				-1.0
3,815,569	+		DDA3937_RS16770	0.21	+0.7
3,815,700	+		DDA3937_RS16770	0.33	+0.8
3,815,729	+		DDA3937_RS16770	0.36	-0.7
3,815,729	+		DDA3937_RS16770	0.36	-0.0
3,815,730	-		DDA3937_RS16770	0.36	-1.1
3,815,751	-		DDA3937_RS16770	0.38	+0.6
3,815,813	-		DDA3937_RS16770	0.43	+0.7
3,815,917	+		DDA3937_RS16770	0.53	+0.1
3,815,917	+		DDA3937_RS16770	0.53	+0.5
3,815,917	+		DDA3937_RS16770	0.53	-1.0
3,815,918	-		DDA3937_RS16770	0.53	-0.1
3,815,918	-		DDA3937_RS16770	0.53	-1.0
3,815,918	-		DDA3937_RS16770	0.53	+0.4
3,815,918	-		DDA3937_RS16770	0.53	-0.3