Strain Fitness in Pantoea sp. MT58 around IAI47_18585

Experiment: Ying_OrganicAcid7 rep A; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_OrganicAcid7 rep A; time point 3
3,956,383	+		IAI47_18580	0.54	-0.8
3,956,403	+		IAI47_18580	0.56	+1.2
3,956,404	-		IAI47_18580	0.56	+0.2
3,956,427	+		IAI47_18580	0.57	+0.6
3,956,427	+		IAI47_18580	0.57	+0.9
3,956,427	+		IAI47_18580	0.57	-0.3
3,956,427	+		IAI47_18580	0.57	+1.4
3,956,428	-		IAI47_18580	0.57	+0.1
3,956,428	-		IAI47_18580	0.57	+0.0
3,956,440	-		IAI47_18580	0.58	-0.3
3,956,440	-		IAI47_18580	0.58	-0.1
3,956,459	+		IAI47_18580	0.60	+2.2
3,956,615	-		IAI47_18580	0.70	+1.8
3,956,615	-		IAI47_18580	0.70	+2.5
3,956,615	-		IAI47_18580	0.70	+0.2
3,956,620	+		IAI47_18580	0.70	-0.3
3,956,620	+		IAI47_18580	0.70	-1.6
3,956,620	+		IAI47_18580	0.70	+0.4
3,956,621	-		IAI47_18580	0.70	+0.7
3,956,621	-		IAI47_18580	0.70	-0.9
3,956,621	-		IAI47_18580	0.70	+0.3
3,956,695	+		IAI47_18580	0.75	+1.7
3,956,695	+		IAI47_18580	0.75	+0.7
3,956,695	+		IAI47_18580	0.75	-0.2
3,956,696	-		IAI47_18580	0.75	+1.2
3,956,696	-		IAI47_18580	0.75	+0.4
3,956,696	-		IAI47_18580	0.75	+1.6
3,956,696	-		IAI47_18580	0.75	+0.8
3,956,696	-		IAI47_18580	0.75	+0.3
3,956,696	-		IAI47_18580	0.75	+0.4
3,956,696	-		IAI47_18580	0.75	+0.7
3,956,696	-		IAI47_18580	0.75	+0.3
3,956,697	+		IAI47_18580	0.76	+2.0
3,956,697	+		IAI47_18580	0.76	-0.6
3,956,697	+		IAI47_18580	0.76	+1.8
3,956,698	-		IAI47_18580	0.76	+1.3
3,956,698	-		IAI47_18580	0.76	+0.8
3,956,698	-		IAI47_18580	0.76	-1.0
3,956,698	-		IAI47_18580	0.76	+1.3
3,956,698	-		IAI47_18580	0.76	+0.0
3,956,698	-		IAI47_18580	0.76	+0.6
3,956,712	+		IAI47_18580	0.77	+0.4
3,956,712	+		IAI47_18580	0.77	+0.9
3,956,712	+		IAI47_18580	0.77	+1.1
3,956,712	+		IAI47_18580	0.77	+2.0
3,956,712	+		IAI47_18580	0.77	-0.3
3,956,712	+		IAI47_18580	0.77	+1.0
3,956,713	-		IAI47_18580	0.77	+1.6
3,956,713	-		IAI47_18580	0.77	+2.0
3,956,713	-		IAI47_18580	0.77	-0.6
3,956,713	-		IAI47_18580	0.77	+0.4
3,956,713	-		IAI47_18580	0.77	+1.3
3,956,719	+		IAI47_18580	0.77	+1.0
3,956,719	+		IAI47_18580	0.77	+0.6
3,956,719	+		IAI47_18580	0.77	+0.0
3,956,720	-		IAI47_18580	0.77	+1.9
3,956,720	-		IAI47_18580	0.77	+0.2
3,956,720	-		IAI47_18580	0.77	-0.3
3,956,785	+		IAI47_18580	0.81	+0.4
3,956,785	+		IAI47_18580	0.81	-0.2
3,956,786	-		IAI47_18580	0.81	+0.6
3,956,786	-		IAI47_18580	0.81	-0.8
3,956,800	+		IAI47_18580	0.82	+1.0
3,956,800	+		IAI47_18580	0.82	-0.6
3,956,800	+		IAI47_18580	0.82	+1.0
3,956,800	+		IAI47_18580	0.82	+0.1
3,956,800	+		IAI47_18580	0.82	+1.6
3,956,800	+		IAI47_18580	0.82	+0.2
3,956,801	-		IAI47_18580	0.82	+0.1
3,956,801	-		IAI47_18580	0.82	+0.6
3,956,801	-		IAI47_18580	0.82	+0.0
3,956,801	-		IAI47_18580	0.82	+0.0
3,956,801	-		IAI47_18580	0.82	+1.1
3,956,801	-		IAI47_18580	0.82	+1.0
3,956,858	+		IAI47_18580	0.86	-0.3
3,956,858	+		IAI47_18580	0.86	-0.8
3,956,858	+		IAI47_18580	0.86	+2.4
3,956,858	+		IAI47_18580	0.86	-0.2
3,956,858	+		IAI47_18580	0.86	+2.0
3,956,859	-		IAI47_18580	0.86	+0.2
3,956,873	-		IAI47_18580	0.87	-0.6
3,956,927	+				+3.3
3,956,927	+				+1.1
3,956,938	+				+1.3
3,957,023	+				-0.8
3,957,024	-				+0.0
3,957,024	-				+1.0
3,957,024	-				+3.4
3,957,024	-				-0.5
3,957,079	+				-0.2
3,957,080	-				-0.6
3,957,088	+				+1.7
3,957,088	+				-0.6
3,957,088	+				-1.3
3,957,088	+				+0.7
3,957,089	-				+0.1
3,957,089	-				-0.9
3,957,089	-				+1.4
3,957,089	-				+0.6
3,957,094	+				+0.4
3,957,094	+				+0.0
3,957,094	+				+1.0
3,957,095	-				+0.1
3,957,107	+				+0.3
3,957,107	+				-0.1
3,957,107	+				+0.8
3,957,108	-				-0.4
3,957,119	+				+3.0
3,957,120	-				-1.1
3,957,120	-				+0.0
3,957,120	-				+0.1
3,957,122	+				+1.0
3,957,123	-				+0.0
3,957,237	+				-0.6
3,957,237	+				+0.6
3,957,237	+				-0.3
3,957,238	-				+0.4
3,957,238	-				-0.4
3,957,238	-				+0.0
3,957,238	-				+0.1
3,957,240	+				-1.8
3,957,241	-				-0.3
3,957,243	-				-0.4
3,957,291	+				-0.9
3,957,292	-				+0.8
3,957,331	+				-2.2
3,957,332	-				+1.3
3,957,332	-				-1.9
3,957,332	-				-1.9
3,957,341	-				-1.0
3,957,341	-				+1.7
3,957,359	-				-2.0
3,957,373	+				-1.6
3,957,373	+				-0.9
3,957,373	+				-1.2
3,957,417	-				-1.2
3,957,417	-				-1.6
3,957,460	+		IAI47_18585	0.12	-1.0
3,957,460	+		IAI47_18585	0.12	-2.2
3,957,461	-		IAI47_18585	0.12	-2.5
3,957,461	-		IAI47_18585	0.12	-2.4
3,957,461	-		IAI47_18585	0.12	-2.2
3,957,461	-		IAI47_18585	0.12	-3.1
3,957,605	-		IAI47_18585	0.23	-3.2
3,957,605	-		IAI47_18585	0.23	-0.6
3,957,619	+		IAI47_18585	0.24	-1.8
3,957,619	+		IAI47_18585	0.24	-1.6
3,957,619	+		IAI47_18585	0.24	-1.9
3,957,619	+		IAI47_18585	0.24	-0.6
3,957,619	+		IAI47_18585	0.24	-3.0
3,957,619	+		IAI47_18585	0.24	-1.6
3,957,619	+		IAI47_18585	0.24	-2.2
3,957,619	+		IAI47_18585	0.24	-1.2
3,957,620	-		IAI47_18585	0.24	-3.3
3,957,620	-		IAI47_18585	0.24	-2.0
3,957,620	-		IAI47_18585	0.24	-0.6
3,957,620	-		IAI47_18585	0.24	-1.6
3,957,620	-		IAI47_18585	0.24	-3.5
3,957,620	-		IAI47_18585	0.24	-1.9
3,957,649	+		IAI47_18585	0.26	-1.2
3,957,649	+		IAI47_18585	0.26	-3.2
3,957,649	+		IAI47_18585	0.26	-3.4
3,957,650	-		IAI47_18585	0.27	-1.8
3,957,650	-		IAI47_18585	0.27	-3.0
3,957,650	-		IAI47_18585	0.27	-2.2
3,957,650	-		IAI47_18585	0.27	-2.2
3,957,650	-		IAI47_18585	0.27	-2.6
3,957,650	-		IAI47_18585	0.27	-2.0
3,957,653	+		IAI47_18585	0.27	-1.6
3,957,653	+		IAI47_18585	0.27	-1.4
3,957,672	+		IAI47_18585	0.28	-2.2
3,957,672	+		IAI47_18585	0.28	-0.6
3,957,673	-		IAI47_18585	0.28	-2.8
3,957,673	-		IAI47_18585	0.28	-2.6
3,957,673	-		IAI47_18585	0.28	-1.5
3,957,694	+		IAI47_18585	0.30	-0.6
3,957,760	+		IAI47_18585	0.35	-0.9
3,957,760	+		IAI47_18585	0.35	+0.4
3,957,760	+		IAI47_18585	0.35	-2.6
3,957,761	-		IAI47_18585	0.35	-1.4
3,957,827	+		IAI47_18585	0.40	-2.3
3,957,827	+		IAI47_18585	0.40	-1.2
3,957,827	+		IAI47_18585	0.40	-2.2
3,957,827	+		IAI47_18585	0.40	-2.5
3,957,827	+		IAI47_18585	0.40	-1.2
3,957,827	+		IAI47_18585	0.40	-3.4
3,957,827	+		IAI47_18585	0.40	-1.6
3,957,828	-		IAI47_18585	0.40	-0.6
3,957,828	-		IAI47_18585	0.40	-2.6
3,957,828	-		IAI47_18585	0.40	-1.4
3,957,828	-		IAI47_18585	0.40	-2.8
3,957,828	-		IAI47_18585	0.40	-0.3
3,957,828	-		IAI47_18585	0.40	-2.7
3,957,828	-		IAI47_18585	0.40	-1.5
3,957,828	-		IAI47_18585	0.40	-0.2
3,957,831	+		IAI47_18585	0.41	+0.0
3,957,831	+		IAI47_18585	0.41	-1.8
3,957,831	+		IAI47_18585	0.41	-1.7
3,957,832	-		IAI47_18585	0.41	-1.2
3,957,832	-		IAI47_18585	0.41	-0.6
3,957,832	-		IAI47_18585	0.41	-1.6
3,957,832	-		IAI47_18585	0.41	-1.4
3,957,832	-		IAI47_18585	0.41	-0.8
3,957,832	-		IAI47_18585	0.41	-1.2
3,957,907	+		IAI47_18585	0.46	-1.9
3,957,907	+		IAI47_18585	0.46	-1.6
3,957,907	+		IAI47_18585	0.46	-2.7
3,957,907	+		IAI47_18585	0.46	-3.4
3,957,907	+		IAI47_18585	0.46	-2.2
3,957,907	+		IAI47_18585	0.46	-3.0
3,957,908	-		IAI47_18585	0.47	-1.6
3,957,908	-		IAI47_18585	0.47	-0.9
3,957,908	-		IAI47_18585	0.47	-1.3
3,957,908	-		IAI47_18585	0.47	-3.0
3,957,908	-		IAI47_18585	0.47	-2.8
3,957,914	+		IAI47_18585	0.47	-2.4
3,957,916	+		IAI47_18585	0.47	-1.0
3,957,917	-		IAI47_18585	0.47	-1.6
3,957,918	+		IAI47_18585	0.47	-2.5
3,957,918	+		IAI47_18585	0.47	-1.9
3,957,918	+		IAI47_18585	0.47	-1.6
3,957,918	+		IAI47_18585	0.47	-2.9
3,957,918	+		IAI47_18585	0.47	-1.9
3,957,918	+		IAI47_18585	0.47	-0.6
3,957,919	-		IAI47_18585	0.47	-1.0
3,957,919	-		IAI47_18585	0.47	-0.6
3,957,919	-		IAI47_18585	0.47	-2.9
3,957,919	-		IAI47_18585	0.47	-1.8
3,957,919	-		IAI47_18585	0.47	-1.6
3,957,919	-		IAI47_18585	0.47	-1.9
3,957,928	+		IAI47_18585	0.48	-2.8
3,957,929	-		IAI47_18585	0.48	-1.2
3,957,929	-		IAI47_18585	0.48	-0.6
3,957,929	-		IAI47_18585	0.48	-2.6
3,957,966	+		IAI47_18585	0.51	-2.4
3,957,966	+		IAI47_18585	0.51	-1.9
3,957,966	+		IAI47_18585	0.51	-2.1
3,957,970	+		IAI47_18585	0.51	-1.6
3,958,004	+		IAI47_18585	0.54	-0.6
3,958,033	+		IAI47_18585	0.56	-2.8
3,958,034	-		IAI47_18585	0.56	-0.6
3,958,034	-		IAI47_18585	0.56	-1.6
3,958,034	-		IAI47_18585	0.56	-3.5
3,958,034	-		IAI47_18585	0.56	-3.5
3,958,094	-		IAI47_18585	0.61	-2.2
3,958,139	+		IAI47_18585	0.64	-1.9
3,958,139	+		IAI47_18585	0.64	-2.2
3,958,140	-		IAI47_18585	0.64	-1.9
3,958,140	-		IAI47_18585	0.64	-3.2
3,958,140	-		IAI47_18585	0.64	-2.4
3,958,140	-		IAI47_18585	0.64	-1.6
3,958,140	-		IAI47_18585	0.64	-1.9
3,958,140	-		IAI47_18585	0.64	-1.8
3,958,140	-		IAI47_18585	0.64	-2.2
3,958,189	+		IAI47_18585	0.68	-1.2
3,958,189	+		IAI47_18585	0.68	-2.2
3,958,190	-		IAI47_18585	0.68	-2.9
3,958,192	+		IAI47_18585	0.69	-0.3
3,958,192	+		IAI47_18585	0.69	-0.6
3,958,193	-		IAI47_18585	0.69	-1.9
3,958,193	-		IAI47_18585	0.69	-1.6
3,958,194	-		IAI47_18585	0.69	-0.8
3,958,239	+		IAI47_18585	0.72	-1.2
3,958,239	+		IAI47_18585	0.72	-2.2
3,958,239	+		IAI47_18585	0.72	-2.4
3,958,240	-		IAI47_18585	0.72	-2.4
3,958,240	-		IAI47_18585	0.72	-2.6
3,958,359	+		IAI47_18585	0.81	-3.6
3,958,360	-		IAI47_18585	0.82	-2.5
3,958,360	-		IAI47_18585	0.82	-0.6
3,958,389	-		IAI47_18585	0.84	-1.6
3,958,432	+		IAI47_18585	0.87	-0.6
3,958,466	+		IAI47_18585	0.90	-3.3
3,958,467	-		IAI47_18585	0.90	-2.2
3,958,467	-		IAI47_18585	0.90	-1.2
3,958,467	-		IAI47_18585	0.90	-3.0
3,958,471	+				-1.8
3,958,471	+				-1.5
3,958,472	-				-1.2
3,958,472	-				-1.6
3,958,472	-				+1.4
3,958,472	-				+0.4
3,958,472	-				-3.0
3,958,508	+				-1.2
3,958,530	-				-2.2
3,958,569	+				-3.1
3,958,569	+				-1.3
3,958,570	-				-1.9
3,958,644	-				-1.3
3,958,669	-				-0.6
3,958,682	-				+0.8
3,958,682	-				-0.2
3,958,693	-				-1.9
3,958,712	+				-0.6
3,958,712	+				-1.2
3,958,713	-				-1.2
3,958,713	-				-2.2
3,958,715	+				-1.6
3,958,715	+				-1.9
3,958,715	+				-1.6
3,958,751	+				-2.0
3,958,752	-				-1.9
3,958,752	-				-2.2
3,958,824	+				-0.2
3,958,861	+				-0.7
3,958,862	-				-0.5
3,958,890	+				-0.6
3,958,890	+				+1.7
3,958,890	+				-0.6
3,958,890	+				+0.2
3,958,891	-				-0.5
3,958,891	-				+0.7
3,958,891	-				-1.2
3,958,896	+				+0.1
3,958,896	+				-0.6
3,958,897	-				+0.1
3,958,897	-				-0.9
3,958,897	-				+1.3
3,958,897	-				+0.9
3,958,984	+				-0.8
3,958,985	-				+1.0
3,958,985	-				-0.9
3,959,072	+		IAI47_18590	0.12	-1.5
3,959,100	+		IAI47_18590	0.14	+1.0
3,959,100	+		IAI47_18590	0.14	+0.6
3,959,100	+		IAI47_18590	0.14	-0.9
3,959,100	+		IAI47_18590	0.14	-1.6
3,959,100	+		IAI47_18590	0.14	+1.7
3,959,101	-		IAI47_18590	0.14	-0.6
3,959,101	-		IAI47_18590	0.14	+0.1
3,959,101	-		IAI47_18590	0.14	+0.7
3,959,101	-		IAI47_18590	0.14	-1.0
3,959,101	-		IAI47_18590	0.14	+0.1
3,959,101	-		IAI47_18590	0.14	+0.1
3,959,101	-		IAI47_18590	0.14	-1.0
3,959,115	+		IAI47_18590	0.15	-3.2
3,959,115	+		IAI47_18590	0.15	-0.6
3,959,116	-		IAI47_18590	0.15	-1.2
3,959,318	-		IAI47_18590	0.25	+1.2
3,959,338	+		IAI47_18590	0.26	+0.4
3,959,338	+		IAI47_18590	0.26	-0.9
3,959,338	+		IAI47_18590	0.26	-0.1
3,959,339	+				+1.4
3,959,339	-		IAI47_18590	0.26	+0.5
3,959,339	-		IAI47_18590	0.26	+1.0
3,959,339	-		IAI47_18590	0.26	-0.8
3,959,399	+		IAI47_18590	0.29	-0.1
3,959,399	+		IAI47_18590	0.29	-1.2
3,959,400	-		IAI47_18590	0.29	-1.2
3,959,400	-		IAI47_18590	0.29	+2.0
3,959,400	-		IAI47_18590	0.29	-0.1
3,959,400	-		IAI47_18590	0.29	-0.5
3,959,408	-		IAI47_18590	0.29	+0.8
3,959,437	+		IAI47_18590	0.31	+0.0
3,959,437	+		IAI47_18590	0.31	+1.6
3,959,449	+		IAI47_18590	0.31	-0.6
3,959,450	-		IAI47_18590	0.31	-0.6
3,959,457	+		IAI47_18590	0.32	+0.7
3,959,457	+		IAI47_18590	0.32	-0.7
3,959,457	+		IAI47_18590	0.32	-0.9
3,959,458	-		IAI47_18590	0.32	+1.8
3,959,458	-		IAI47_18590	0.32	-0.6
3,959,458	-		IAI47_18590	0.32	-0.4