Strain Fitness in Pantoea sp. MT58 around IAI47_17185

Experiment: Ying_sugar7 rep B; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_sugar7 rep B; time point 3
3,637,976	+				+0.3
3,637,976	+				+0.8
3,637,976	+				+1.8
3,637,977	-				-3.4
3,637,977	-				-3.0
3,637,987	+				-0.7
3,637,987	+				+0.6
3,638,001	-				+0.3
3,638,001	-				-1.7
3,638,001	-				-3.7
3,638,011	+				-1.2
3,638,011	+				-0.2
3,638,012	-				-2.5
3,638,012	-				-2.0
3,638,012	-				-2.7
3,638,023	+				-0.4
3,638,023	+				-1.5
3,638,023	+				-2.0
3,638,024	-				-2.0
3,638,024	-				+0.3
3,638,037	+				-3.4
3,638,037	+				+0.8
3,638,110	+				-2.2
3,638,133	+				-3.2
3,638,297	+		IAI47_17185	0.19	-1.2
3,638,297	+		IAI47_17185	0.19	-1.2
3,638,349	+		IAI47_17185	0.23	-3.4
3,638,357	+		IAI47_17185	0.23	+0.3
3,638,358	-		IAI47_17185	0.23	-0.7
3,638,358	-		IAI47_17185	0.23	-2.2
3,638,390	+		IAI47_17185	0.26	-3.2
3,638,390	+		IAI47_17185	0.26	-1.7
3,638,390	+		IAI47_17185	0.26	-1.2
3,638,391	-		IAI47_17185	0.26	-1.7
3,638,391	-		IAI47_17185	0.26	+0.3
3,638,429	-		IAI47_17185	0.28	-1.2
3,638,453	-		IAI47_17185	0.30	-2.5
3,638,465	-		IAI47_17185	0.31	-0.7
3,638,515	+		IAI47_17185	0.34	-1.7
3,638,640	-		IAI47_17185	0.43	-0.7
3,638,757	+		IAI47_17185	0.51	-1.7
3,638,757	+		IAI47_17185	0.51	-1.2
3,638,757	+		IAI47_17185	0.51	-3.1
3,638,757	+		IAI47_17185	0.51	-3.2
3,638,758	-		IAI47_17185	0.51	-0.7
3,638,819	-		IAI47_17185	0.55	-2.2
3,638,834	+		IAI47_17185	0.56	-3.8
3,638,834	+		IAI47_17185	0.56	-1.7
3,638,835	-		IAI47_17185	0.57	-2.5
3,638,835	-		IAI47_17185	0.57	-3.4
3,638,835	-		IAI47_17185	0.57	-2.2
3,638,835	-		IAI47_17185	0.57	-1.2
3,638,860	+		IAI47_17185	0.58	-2.5
3,638,930	+		IAI47_17185	0.63	-2.0
3,638,930	+		IAI47_17185	0.63	-2.5
3,638,931	-		IAI47_17185	0.63	-1.7
3,638,986	+		IAI47_17185	0.67	-2.8
3,638,986	+		IAI47_17185	0.67	-0.7
3,639,013	+		IAI47_17185	0.69	-2.2
3,639,013	+		IAI47_17185	0.69	-2.2
3,639,038	-		IAI47_17185	0.71	-1.7
3,639,038	-		IAI47_17185	0.71	-2.7
3,639,106	+		IAI47_17185	0.75	-3.6
3,639,106	+		IAI47_17185	0.75	-2.2
3,639,178	+		IAI47_17185	0.80	-1.2
3,639,188	+		IAI47_17185	0.81	-2.0
3,639,188	+		IAI47_17185	0.81	-2.5
3,639,189	-		IAI47_17185	0.81	-1.2
3,639,219	+		IAI47_17185	0.83	-2.8
3,639,219	+		IAI47_17185	0.83	-1.2
3,639,219	+		IAI47_17185	0.83	-1.2
3,639,220	-		IAI47_17185	0.83	+0.3
3,639,220	-		IAI47_17185	0.83	-2.2
3,639,343	+				-2.0
3,639,343	+				-1.7
3,639,344	-				-1.7
3,639,344	-				-1.7
3,639,360	+				-2.0
3,639,360	+				-2.0
3,639,360	+				-2.0
3,639,391	+				-2.5
3,639,442	+				+0.2
3,639,442	+				+0.1
3,639,442	+				-1.2
3,639,478	+				+1.3
3,639,478	+				-0.8
3,639,478	+				-0.3
3,639,478	+				+0.8
3,639,478	+				-0.2
3,639,478	+				-0.8
3,639,478	+				+0.3
3,639,478	+				+1.1
3,639,478	+				-0.2
3,639,479	-				-0.7
3,639,479	-				-1.8
3,639,479	-				-1.0
3,639,479	-				-1.7
3,639,479	-				+0.8
3,639,479	-				-2.2
3,639,479	-				-1.0
3,639,479	-				-0.5
3,639,577	+		IAI47_17190	0.34	-0.2
3,639,577	+		IAI47_17190	0.34	-0.2
3,639,577	+		IAI47_17190	0.34	-0.4
3,639,577	+		IAI47_17190	0.34	+2.1
3,639,577	+		IAI47_17190	0.34	-0.3
3,639,577	+		IAI47_17190	0.34	+0.4
3,639,577	+		IAI47_17190	0.34	-0.7
3,639,577	+		IAI47_17190	0.34	-0.8
3,639,577	+		IAI47_17190	0.34	+0.8
3,639,577	+		IAI47_17190	0.34	-0.9
3,639,577	+		IAI47_17190	0.34	-0.3
3,639,578	-		IAI47_17190	0.34	-0.7
3,639,590	+		IAI47_17190	0.39	-1.4
3,639,590	+		IAI47_17190	0.39	-0.5
3,639,590	+		IAI47_17190	0.39	-1.7
3,639,590	+		IAI47_17190	0.39	-0.7
3,639,590	+		IAI47_17190	0.39	-0.4
3,639,590	+		IAI47_17190	0.39	+0.2
3,639,590	+		IAI47_17190	0.39	-0.7
3,639,590	+		IAI47_17190	0.39	+1.1
3,639,591	-		IAI47_17190	0.39	-1.0
3,639,591	-		IAI47_17190	0.39	+0.8
3,639,591	-		IAI47_17190	0.39	-2.7
3,639,591	-		IAI47_17190	0.39	-0.7
3,639,591	-		IAI47_17190	0.39	-2.0
3,639,591	-		IAI47_17190	0.39	-1.2
3,639,591	-		IAI47_17190	0.39	-1.7
3,639,591	-		IAI47_17190	0.39	+1.7
3,639,592	+		IAI47_17190	0.39	+1.2
3,639,592	+		IAI47_17190	0.39	+0.5
3,639,592	+		IAI47_17190	0.39	+0.6
3,639,592	+		IAI47_17190	0.39	+0.7
3,639,592	+		IAI47_17190	0.39	-0.8
3,639,593	-		IAI47_17190	0.40	-1.0
3,639,593	-		IAI47_17190	0.40	-0.8
3,639,593	-		IAI47_17190	0.40	-0.0
3,639,668	-		IAI47_17190	0.66	-1.2
3,639,685	+		IAI47_17190	0.72	+0.7
3,639,685	+		IAI47_17190	0.72	+2.5
3,639,685	+		IAI47_17190	0.72	+0.2
3,639,685	+		IAI47_17190	0.72	+1.0
3,639,685	+		IAI47_17190	0.72	-0.7
3,639,685	+		IAI47_17190	0.72	+0.6
3,639,685	+		IAI47_17190	0.72	-1.7
3,639,685	+		IAI47_17190	0.72	+0.1
3,639,685	+		IAI47_17190	0.72	+0.2
3,639,685	+		IAI47_17190	0.72	+1.3
3,639,685	+		IAI47_17190	0.72	-0.2
3,639,685	+		IAI47_17190	0.72	+1.3
3,639,685	+		IAI47_17190	0.72	-1.8
3,639,685	+		IAI47_17190	0.72	+0.3
3,639,685	+		IAI47_17190	0.72	-0.5
3,639,685	+		IAI47_17190	0.72	+0.1
3,639,685	+		IAI47_17190	0.72	-1.2
3,639,689	+		IAI47_17190	0.73	+0.1
3,639,689	+		IAI47_17190	0.73	+0.9
3,639,689	+		IAI47_17190	0.73	-0.6
3,639,689	+		IAI47_17190	0.73	+0.3
3,639,689	+		IAI47_17190	0.73	-0.2
3,639,689	+		IAI47_17190	0.73	-0.5
3,639,689	+		IAI47_17190	0.73	-1.0
3,639,689	+		IAI47_17190	0.73	+0.9
3,639,689	+		IAI47_17190	0.73	-0.4
3,639,689	+		IAI47_17190	0.73	+1.5
3,639,689	+		IAI47_17190	0.73	+1.3
3,639,689	+		IAI47_17190	0.73	+0.8
3,639,689	+		IAI47_17190	0.73	+1.0
3,639,689	+		IAI47_17190	0.73	+0.1
3,639,690	-		IAI47_17190	0.73	-1.0
3,639,690	-		IAI47_17190	0.73	-1.2
3,639,690	-		IAI47_17190	0.73	-1.0
3,639,690	-		IAI47_17190	0.73	-2.5
3,639,764	+				+0.9
3,639,764	+				-0.0
3,639,776	+				-1.6
3,639,868	+				+0.4
3,639,868	+				-1.1
3,639,868	+				-0.3
3,639,869	-				-1.2
3,639,917	+				-1.7
3,639,933	+				-1.7
3,639,934	-				-2.0
3,639,983	+		IAI47_17195	0.13	-0.5
3,640,371	+				-0.7
3,640,372	-				+0.8
3,640,372	-				-0.7
3,640,396	+				+1.6
3,640,396	+				+0.8
3,640,396	+				-0.4
3,640,397	-				-1.7
3,640,397	-				-1.0
3,640,427	+				+1.3