Strain Fitness in Pantoea sp. MT58 around IAI47_01370

Experiment: Ying_sugar7 rep B; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI47_01365 and IAI47_01370 are separated by 242 nucleotidesIAI47_01370 and IAI47_01375 are separated by 7 nucleotides IAI47_01365: IAI47_01365 - inorganic phosphate transporter PitA, at 294,272 to 295,774 _01365 IAI47_01370: IAI47_01370 - NAD(P)/FAD-dependent oxidoreductase, at 296,017 to 297,201 _01370 IAI47_01375: IAI47_01375 - aldo/keto reductase, at 297,209 to 298,195 _01375 Position (kb) 296 297 298Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 295.108 kb on - strand, within IAI47_01365at 295.201 kb on + strand, within IAI47_01365at 295.541 kb on - strandat 295.541 kb on - strandat 295.645 kb on - strandat 295.739 kb on - strandat 295.752 kb on - strandat 295.769 kb on + strandat 295.774 kb on + strandat 295.857 kb on + strandat 295.857 kb on + strandat 295.857 kb on + strandat 295.857 kb on + strandat 295.907 kb on + strandat 295.907 kb on + strandat 295.912 kb on - strandat 295.912 kb on - strandat 295.912 kb on - strandat 295.912 kb on - strandat 295.914 kb on + strandat 295.922 kb on + strandat 295.927 kb on + strandat 295.928 kb on - strandat 295.981 kb on - strandat 296.001 kb on + strandat 296.001 kb on + strandat 296.002 kb on - strandat 296.034 kb on + strandat 296.106 kb on - strandat 296.106 kb on - strandat 296.182 kb on + strand, within IAI47_01370at 296.183 kb on - strand, within IAI47_01370at 296.200 kb on + strand, within IAI47_01370at 296.201 kb on - strand, within IAI47_01370at 296.201 kb on - strand, within IAI47_01370at 296.201 kb on - strand, within IAI47_01370at 296.201 kb on - strand, within IAI47_01370at 296.227 kb on - strand, within IAI47_01370at 296.227 kb on - strand, within IAI47_01370at 296.245 kb on + strand, within IAI47_01370at 296.245 kb on + strand, within IAI47_01370at 296.246 kb on - strand, within IAI47_01370at 296.246 kb on - strand, within IAI47_01370at 296.247 kb on + strand, within IAI47_01370at 296.247 kb on + strand, within IAI47_01370at 296.247 kb on + strand, within IAI47_01370at 296.247 kb on + strand, within IAI47_01370at 296.248 kb on - strand, within IAI47_01370at 296.263 kb on - strand, within IAI47_01370at 296.263 kb on - strand, within IAI47_01370at 296.263 kb on - strand, within IAI47_01370at 296.268 kb on + strand, within IAI47_01370at 296.274 kb on + strand, within IAI47_01370at 296.437 kb on + strand, within IAI47_01370at 296.437 kb on + strand, within IAI47_01370at 296.437 kb on + strand, within IAI47_01370at 296.438 kb on - strand, within IAI47_01370at 296.438 kb on - strand, within IAI47_01370at 296.569 kb on + strand, within IAI47_01370at 296.569 kb on + strand, within IAI47_01370at 296.570 kb on - strand, within IAI47_01370at 296.598 kb on + strand, within IAI47_01370at 296.598 kb on + strand, within IAI47_01370at 296.598 kb on + strand, within IAI47_01370at 296.599 kb on - strand, within IAI47_01370at 296.607 kb on + strand, within IAI47_01370at 296.607 kb on + strand, within IAI47_01370at 296.607 kb on + strand, within IAI47_01370at 296.607 kb on + strand, within IAI47_01370at 296.607 kb on + strand, within IAI47_01370at 296.607 kb on + strand, within IAI47_01370at 296.608 kb on - strand, within IAI47_01370at 296.608 kb on - strand, within IAI47_01370at 296.608 kb on - strand, within IAI47_01370at 296.627 kb on + strand, within IAI47_01370at 296.627 kb on + strand, within IAI47_01370at 296.627 kb on + strand, within IAI47_01370at 296.627 kb on + strand, within IAI47_01370at 296.627 kb on + strand, within IAI47_01370at 296.628 kb on - strand, within IAI47_01370at 296.628 kb on - strand, within IAI47_01370at 296.628 kb on - strand, within IAI47_01370at 296.628 kb on - strand, within IAI47_01370at 296.679 kb on + strand, within IAI47_01370at 296.688 kb on + strand, within IAI47_01370at 296.688 kb on + strand, within IAI47_01370at 296.735 kb on + strand, within IAI47_01370at 296.752 kb on + strand, within IAI47_01370at 296.753 kb on - strand, within IAI47_01370at 296.898 kb on - strand, within IAI47_01370at 296.898 kb on - strand, within IAI47_01370at 296.898 kb on - strand, within IAI47_01370at 296.898 kb on - strand, within IAI47_01370at 296.898 kb on - strand, within IAI47_01370at 297.016 kb on + strand, within IAI47_01370at 297.047 kb on + strand, within IAI47_01370at 297.048 kb on - strand, within IAI47_01370at 297.103 kb on + strandat 297.103 kb on + strandat 297.103 kb on + strandat 297.104 kb on - strandat 297.104 kb on - strandat 297.104 kb on - strandat 297.104 kb on - strandat 297.108 kb on + strandat 297.109 kb on - strandat 297.109 kb on - strandat 297.109 kb on - strandat 297.109 kb on - strandat 297.109 kb on - strandat 297.109 kb on - strandat 297.148 kb on + strandat 297.148 kb on + strandat 297.148 kb on + strandat 297.148 kb on + strandat 297.148 kb on + strandat 297.149 kb on - strandat 297.149 kb on - strandat 297.149 kb on - strandat 297.150 kb on + strandat 297.150 kb on + strandat 297.150 kb on + strandat 297.150 kb on + strandat 297.150 kb on + strandat 297.150 kb on + strandat 297.150 kb on + strandat 297.150 kb on + strandat 297.150 kb on + strandat 297.151 kb on - strandat 297.151 kb on - strandat 297.151 kb on - strandat 297.151 kb on - strandat 297.151 kb on - strandat 297.151 kb on - strandat 297.151 kb on - strandat 297.151 kb on - strandat 297.151 kb on - strandat 297.151 kb on - strandat 297.151 kb on - strandat 297.151 kb on - strandat 297.199 kb on + strandat 297.199 kb on + strandat 297.200 kb on - strandat 297.249 kb on + strandat 297.249 kb on + strandat 297.250 kb on - strandat 297.250 kb on - strandat 297.274 kb on + strandat 297.274 kb on + strandat 297.275 kb on - strandat 297.462 kb on + strand, within IAI47_01375at 297.462 kb on + strand, within IAI47_01375at 297.462 kb on + strand, within IAI47_01375at 297.462 kb on + strand, within IAI47_01375at 297.462 kb on + strand, within IAI47_01375at 297.463 kb on - strand, within IAI47_01375at 297.463 kb on - strand, within IAI47_01375at 297.463 kb on - strand, within IAI47_01375at 297.463 kb on - strand, within IAI47_01375at 297.463 kb on - strand, within IAI47_01375at 297.463 kb on - strand, within IAI47_01375at 297.509 kb on - strand, within IAI47_01375at 297.509 kb on - strand, within IAI47_01375at 297.669 kb on + strand, within IAI47_01375at 297.669 kb on + strand, within IAI47_01375at 297.748 kb on - strand, within IAI47_01375at 297.748 kb on - strand, within IAI47_01375at 297.807 kb on + strand, within IAI47_01375at 297.807 kb on + strand, within IAI47_01375at 297.808 kb on - strand, within IAI47_01375at 297.808 kb on - strand, within IAI47_01375at 297.808 kb on - strand, within IAI47_01375at 297.808 kb on - strand, within IAI47_01375at 297.808 kb on - strand, within IAI47_01375at 297.808 kb on - strand, within IAI47_01375at 297.808 kb on - strand, within IAI47_01375at 297.808 kb on - strand, within IAI47_01375at 297.810 kb on + strand, within IAI47_01375at 297.810 kb on + strand, within IAI47_01375at 297.810 kb on + strand, within IAI47_01375at 297.810 kb on + strand, within IAI47_01375at 297.811 kb on - strand, within IAI47_01375at 297.811 kb on - strand, within IAI47_01375at 297.811 kb on - strand, within IAI47_01375at 297.811 kb on - strand, within IAI47_01375at 297.811 kb on - strand, within IAI47_01375at 297.811 kb on - strand, within IAI47_01375at 297.887 kb on - strand, within IAI47_01375at 297.913 kb on - strand, within IAI47_01375at 297.913 kb on - strand, within IAI47_01375at 297.913 kb on - strand, within IAI47_01375at 298.029 kb on + strand, within IAI47_01375at 298.029 kb on + strand, within IAI47_01375at 298.030 kb on - strand, within IAI47_01375at 298.030 kb on - strand, within IAI47_01375at 298.030 kb on - strand, within IAI47_01375at 298.042 kb on + strand, within IAI47_01375at 298.043 kb on - strand, within IAI47_01375at 298.048 kb on + strand, within IAI47_01375at 298.049 kb on - strand, within IAI47_01375at 298.049 kb on - strand, within IAI47_01375at 298.049 kb on - strand, within IAI47_01375

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_sugar7 rep B; time point 3
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295,108 - IAI47_01365 0.56 -1.6
295,201 + IAI47_01365 0.62 -0.2
295,541 - -1.2
295,541 - +0.4
295,645 - -2.4
295,739 - -2.6
295,752 - -3.1
295,769 + -1.2
295,774 + -1.2
295,857 + -0.1
295,857 + -0.8
295,857 + +0.4
295,857 + +0.6
295,907 + +2.0
295,907 + -0.5
295,912 - +0.4
295,912 - -0.3
295,912 - +2.2
295,912 - -0.2
295,914 + +0.4
295,922 + -0.6
295,927 + -1.2
295,928 - -0.3
295,981 - -0.6
296,001 + -1.4
296,001 + -0.3
296,002 - -0.6
296,034 + +0.0
296,106 - +0.4
296,106 - -1.2
296,182 + IAI47_01370 0.14 -0.6
296,183 - IAI47_01370 0.14 -0.9
296,200 + IAI47_01370 0.15 +0.6
296,201 - IAI47_01370 0.16 -1.2
296,201 - IAI47_01370 0.16 -0.6
296,201 - IAI47_01370 0.16 -2.0
296,201 - IAI47_01370 0.16 -0.6
296,227 - IAI47_01370 0.18 +0.2
296,227 - IAI47_01370 0.18 -0.4
296,245 + IAI47_01370 0.19 -0.1
296,245 + IAI47_01370 0.19 -1.0
296,246 - IAI47_01370 0.19 +0.5
296,246 - IAI47_01370 0.19 -1.2
296,247 + IAI47_01370 0.19 -1.4
296,247 + IAI47_01370 0.19 +0.2
296,247 + IAI47_01370 0.19 -0.8
296,247 + IAI47_01370 0.19 +0.2
296,248 - IAI47_01370 0.19 +0.0
296,263 - IAI47_01370 0.21 -1.9
296,263 - IAI47_01370 0.21 +0.4
296,263 - IAI47_01370 0.21 -2.0
296,268 + IAI47_01370 0.21 +0.0
296,274 + IAI47_01370 0.22 -0.1
296,437 + IAI47_01370 0.35 -1.2
296,437 + IAI47_01370 0.35 -1.3
296,437 + IAI47_01370 0.35 -1.0
296,438 - IAI47_01370 0.36 -1.2
296,438 - IAI47_01370 0.36 +0.9
296,569 + IAI47_01370 0.47 -0.8
296,569 + IAI47_01370 0.47 +0.2
296,570 - IAI47_01370 0.47 -0.3
296,598 + IAI47_01370 0.49 -1.0
296,598 + IAI47_01370 0.49 +0.4
296,598 + IAI47_01370 0.49 -0.8
296,599 - IAI47_01370 0.49 +2.1
296,607 + IAI47_01370 0.50 +2.1
296,607 + IAI47_01370 0.50 +0.3
296,607 + IAI47_01370 0.50 +1.0
296,607 + IAI47_01370 0.50 +0.6
296,607 + IAI47_01370 0.50 +1.7
296,607 + IAI47_01370 0.50 +1.7
296,608 - IAI47_01370 0.50 +1.0
296,608 - IAI47_01370 0.50 -0.4
296,608 - IAI47_01370 0.50 +0.0
296,627 + IAI47_01370 0.51 -0.6
296,627 + IAI47_01370 0.51 -0.6
296,627 + IAI47_01370 0.51 +1.3
296,627 + IAI47_01370 0.51 -0.3
296,627 + IAI47_01370 0.51 +1.4
296,628 - IAI47_01370 0.52 -2.0
296,628 - IAI47_01370 0.52 -0.3
296,628 - IAI47_01370 0.52 +1.1
296,628 - IAI47_01370 0.52 -1.0
296,679 + IAI47_01370 0.56 -2.2
296,688 + IAI47_01370 0.57 +0.0
296,688 + IAI47_01370 0.57 +2.5
296,735 + IAI47_01370 0.61 -0.1
296,752 + IAI47_01370 0.62 -0.9
296,753 - IAI47_01370 0.62 -0.6
296,898 - IAI47_01370 0.74 -0.8
296,898 - IAI47_01370 0.74 -0.2
296,898 - IAI47_01370 0.74 -1.2
296,898 - IAI47_01370 0.74 -0.2
296,898 - IAI47_01370 0.74 -1.2
297,016 + IAI47_01370 0.84 +0.4
297,047 + IAI47_01370 0.87 +1.0
297,048 - IAI47_01370 0.87 -3.9
297,103 + -0.9
297,103 + +1.6
297,103 + +0.0
297,104 - -1.2
297,104 - -1.0
297,104 - -0.6
297,104 - -0.4
297,108 + -1.0
297,109 - -0.4
297,109 - +0.0
297,109 - -1.0
297,109 - +0.4
297,109 - +0.7
297,109 - -0.9
297,148 + -0.6
297,148 + +2.0
297,148 + +0.5
297,148 + -0.4
297,148 + +0.8
297,149 - +0.1
297,149 - -1.5
297,149 - -2.0
297,150 + -1.2
297,150 + -2.0
297,150 + +1.0
297,150 + -0.1
297,150 + +1.3
297,150 + -0.0
297,150 + -0.8
297,150 + +0.2
297,150 + -0.5
297,151 - -1.2
297,151 - +1.2
297,151 - -0.6
297,151 - -0.6
297,151 - +0.6
297,151 - -0.2
297,151 - -0.3
297,151 - +0.4
297,151 - +0.2
297,151 - +0.4
297,151 - -1.2
297,151 - +0.4
297,199 + +0.8
297,199 + +1.7
297,200 - +0.5
297,249 + -1.2
297,249 + +2.4
297,250 - -0.3
297,250 - +0.4
297,274 + -1.2
297,274 + +0.4
297,275 - +0.9
297,462 + IAI47_01375 0.26 -0.3
297,462 + IAI47_01375 0.26 -2.1
297,462 + IAI47_01375 0.26 -1.0
297,462 + IAI47_01375 0.26 +0.9
297,462 + IAI47_01375 0.26 -0.6
297,463 - IAI47_01375 0.26 -0.8
297,463 - IAI47_01375 0.26 -0.5
297,463 - IAI47_01375 0.26 -0.0
297,463 - IAI47_01375 0.26 -1.8
297,463 - IAI47_01375 0.26 +2.0
297,463 - IAI47_01375 0.26 +1.1
297,509 - IAI47_01375 0.30 +0.3
297,509 - IAI47_01375 0.30 +0.4
297,669 + IAI47_01375 0.47 +2.1
297,669 + IAI47_01375 0.47 +0.8
297,748 - IAI47_01375 0.55 +0.4
297,748 - IAI47_01375 0.55 +0.6
297,807 + IAI47_01375 0.61 -1.8
297,807 + IAI47_01375 0.61 -0.1
297,808 - IAI47_01375 0.61 -1.8
297,808 - IAI47_01375 0.61 +1.8
297,808 - IAI47_01375 0.61 +2.7
297,808 - IAI47_01375 0.61 -0.3
297,808 - IAI47_01375 0.61 -0.1
297,808 - IAI47_01375 0.61 +0.4
297,808 - IAI47_01375 0.61 -0.0
297,808 - IAI47_01375 0.61 -1.2
297,810 + IAI47_01375 0.61 -0.5
297,810 + IAI47_01375 0.61 -0.2
297,810 + IAI47_01375 0.61 +0.4
297,810 + IAI47_01375 0.61 -0.3
297,811 - IAI47_01375 0.61 -0.3
297,811 - IAI47_01375 0.61 -1.7
297,811 - IAI47_01375 0.61 +0.5
297,811 - IAI47_01375 0.61 +0.5
297,811 - IAI47_01375 0.61 -0.6
297,811 - IAI47_01375 0.61 -0.9
297,887 - IAI47_01375 0.69 +0.3
297,913 - IAI47_01375 0.71 +0.6
297,913 - IAI47_01375 0.71 -0.6
297,913 - IAI47_01375 0.71 -0.4
298,029 + IAI47_01375 0.83 -0.7
298,029 + IAI47_01375 0.83 -0.2
298,030 - IAI47_01375 0.83 -0.9
298,030 - IAI47_01375 0.83 -0.1
298,030 - IAI47_01375 0.83 +1.7
298,042 + IAI47_01375 0.84 +0.6
298,043 - IAI47_01375 0.84 +0.1
298,048 + IAI47_01375 0.85 -0.8
298,049 - IAI47_01375 0.85 +1.8
298,049 - IAI47_01375 0.85 +0.4
298,049 - IAI47_01375 0.85 -1.0

Or see this region's nucleotide sequence