Strain Fitness in Pantoea sp. MT58 around IAI47_01045

Experiment: Ying_sugar7 rep B; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI47_01040 and IAI47_01045 are separated by 0 nucleotidesIAI47_01045 and IAI47_01050 are separated by 162 nucleotides IAI47_01040: IAI47_01040 - threonine ammonia-lyase, biosynthetic, at 220,779 to 222,326 _01040 IAI47_01045: IAI47_01045 - HTH-type transcriptional activator IlvY, at 222,327 to 223,208 _01045 IAI47_01050: IAI47_01050 - ketol-acid reductoisomerase, at 223,371 to 224,846 _01050 Position (kb) 222 223 224Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 221.550 kb on + strand, within IAI47_01040at 221.550 kb on + strand, within IAI47_01040at 221.551 kb on - strand, within IAI47_01040at 221.551 kb on - strand, within IAI47_01040at 221.551 kb on - strand, within IAI47_01040at 221.551 kb on - strand, within IAI47_01040at 221.551 kb on - strand, within IAI47_01040at 221.551 kb on - strand, within IAI47_01040at 221.551 kb on - strand, within IAI47_01040at 221.564 kb on + strand, within IAI47_01040at 221.564 kb on + strand, within IAI47_01040at 221.565 kb on - strand, within IAI47_01040at 221.565 kb on - strand, within IAI47_01040at 221.565 kb on - strand, within IAI47_01040at 221.565 kb on - strand, within IAI47_01040at 221.673 kb on + strand, within IAI47_01040at 221.673 kb on + strand, within IAI47_01040at 221.674 kb on - strand, within IAI47_01040at 221.674 kb on - strand, within IAI47_01040at 221.675 kb on + strand, within IAI47_01040at 221.676 kb on - strand, within IAI47_01040at 221.719 kb on + strand, within IAI47_01040at 221.719 kb on + strand, within IAI47_01040at 221.719 kb on + strand, within IAI47_01040at 221.720 kb on - strand, within IAI47_01040at 221.754 kb on + strand, within IAI47_01040at 221.754 kb on + strand, within IAI47_01040at 221.755 kb on - strand, within IAI47_01040at 221.883 kb on + strand, within IAI47_01040at 221.883 kb on + strand, within IAI47_01040at 221.883 kb on + strand, within IAI47_01040at 221.883 kb on + strand, within IAI47_01040at 221.883 kb on + strand, within IAI47_01040at 221.883 kb on + strand, within IAI47_01040at 221.884 kb on - strand, within IAI47_01040at 221.884 kb on - strand, within IAI47_01040at 221.884 kb on - strand, within IAI47_01040at 221.884 kb on - strand, within IAI47_01040at 221.884 kb on - strand, within IAI47_01040at 221.889 kb on + strand, within IAI47_01040at 221.944 kb on + strand, within IAI47_01040at 222.039 kb on + strand, within IAI47_01040at 222.039 kb on + strand, within IAI47_01040at 222.039 kb on + strand, within IAI47_01040at 222.039 kb on + strand, within IAI47_01040at 222.039 kb on + strand, within IAI47_01040at 222.040 kb on - strand, within IAI47_01040at 222.040 kb on - strand, within IAI47_01040at 222.040 kb on - strand, within IAI47_01040at 222.040 kb on - strand, within IAI47_01040at 222.155 kb on + strand, within IAI47_01040at 222.156 kb on - strand, within IAI47_01040at 222.156 kb on - strand, within IAI47_01040at 222.192 kb on + strandat 222.192 kb on + strandat 222.192 kb on + strandat 222.192 kb on + strandat 222.192 kb on + strandat 222.192 kb on + strandat 222.193 kb on - strandat 222.193 kb on - strandat 222.193 kb on - strandat 222.193 kb on - strandat 222.193 kb on - strandat 222.193 kb on - strandat 222.328 kb on + strandat 222.328 kb on + strandat 222.328 kb on + strandat 222.329 kb on - strandat 222.329 kb on - strandat 222.419 kb on + strand, within IAI47_01045at 222.419 kb on + strand, within IAI47_01045at 222.420 kb on - strand, within IAI47_01045at 222.420 kb on - strand, within IAI47_01045at 222.430 kb on - strand, within IAI47_01045at 222.495 kb on - strand, within IAI47_01045at 222.540 kb on + strand, within IAI47_01045at 222.540 kb on + strand, within IAI47_01045at 222.550 kb on + strand, within IAI47_01045at 222.550 kb on + strand, within IAI47_01045at 222.550 kb on + strand, within IAI47_01045at 222.551 kb on - strand, within IAI47_01045at 222.551 kb on - strand, within IAI47_01045at 222.551 kb on - strand, within IAI47_01045at 222.629 kb on + strand, within IAI47_01045at 222.629 kb on + strand, within IAI47_01045at 222.629 kb on + strand, within IAI47_01045at 222.708 kb on + strand, within IAI47_01045at 222.709 kb on - strand, within IAI47_01045at 222.734 kb on + strand, within IAI47_01045at 222.735 kb on - strand, within IAI47_01045at 222.901 kb on + strand, within IAI47_01045at 222.901 kb on + strand, within IAI47_01045at 222.901 kb on + strand, within IAI47_01045at 222.901 kb on + strand, within IAI47_01045at 222.901 kb on + strand, within IAI47_01045at 222.901 kb on + strand, within IAI47_01045at 222.901 kb on + strand, within IAI47_01045at 222.901 kb on + strand, within IAI47_01045at 222.902 kb on - strand, within IAI47_01045at 222.902 kb on - strand, within IAI47_01045at 222.902 kb on - strand, within IAI47_01045at 222.902 kb on - strand, within IAI47_01045at 222.985 kb on + strand, within IAI47_01045at 222.985 kb on + strand, within IAI47_01045at 222.986 kb on - strand, within IAI47_01045at 223.055 kb on + strand, within IAI47_01045at 223.087 kb on - strand, within IAI47_01045at 223.201 kb on - strandat 223.258 kb on + strandat 223.292 kb on + strandat 223.292 kb on + strandat 223.292 kb on + strandat 223.292 kb on + strandat 223.292 kb on + strandat 223.292 kb on + strandat 223.292 kb on + strandat 223.292 kb on + strandat 223.292 kb on + strandat 223.293 kb on - strandat 223.293 kb on - strandat 223.293 kb on - strandat 223.293 kb on - strandat 223.293 kb on - strandat 223.293 kb on - strandat 223.293 kb on - strandat 223.293 kb on - strandat 223.358 kb on + strandat 223.358 kb on + strandat 223.358 kb on + strandat 223.359 kb on - strandat 223.359 kb on - strandat 223.359 kb on - strandat 223.367 kb on - strandat 223.376 kb on + strandat 223.376 kb on + strandat 223.376 kb on + strandat 223.377 kb on - strandat 223.380 kb on + strandat 223.380 kb on + strandat 223.380 kb on + strandat 223.381 kb on - strandat 223.381 kb on - strandat 223.381 kb on - strandat 223.381 kb on - strandat 223.420 kb on + strandat 223.494 kb on - strandat 223.563 kb on + strand, within IAI47_01050at 223.563 kb on + strand, within IAI47_01050at 223.563 kb on + strand, within IAI47_01050at 223.563 kb on + strand, within IAI47_01050at 223.563 kb on + strand, within IAI47_01050at 223.564 kb on - strand, within IAI47_01050at 223.564 kb on - strand, within IAI47_01050at 223.564 kb on - strand, within IAI47_01050at 223.564 kb on - strand, within IAI47_01050at 223.640 kb on + strand, within IAI47_01050at 223.641 kb on - strand, within IAI47_01050at 223.641 kb on - strand, within IAI47_01050at 223.641 kb on - strand, within IAI47_01050at 223.641 kb on - strand, within IAI47_01050at 223.644 kb on + strand, within IAI47_01050at 223.644 kb on + strand, within IAI47_01050at 223.644 kb on + strand, within IAI47_01050at 223.645 kb on - strand, within IAI47_01050at 223.645 kb on - strand, within IAI47_01050at 223.645 kb on - strand, within IAI47_01050at 223.645 kb on - strand, within IAI47_01050at 223.645 kb on - strand, within IAI47_01050at 223.645 kb on - strand, within IAI47_01050at 223.759 kb on - strand, within IAI47_01050at 223.802 kb on + strand, within IAI47_01050at 223.803 kb on - strand, within IAI47_01050at 223.803 kb on - strand, within IAI47_01050at 223.803 kb on - strand, within IAI47_01050at 223.863 kb on + strand, within IAI47_01050at 223.944 kb on - strand, within IAI47_01050at 223.944 kb on - strand, within IAI47_01050at 224.039 kb on + strand, within IAI47_01050at 224.039 kb on + strand, within IAI47_01050at 224.039 kb on + strand, within IAI47_01050at 224.039 kb on + strand, within IAI47_01050at 224.040 kb on - strand, within IAI47_01050at 224.103 kb on - strand, within IAI47_01050at 224.103 kb on - strand, within IAI47_01050at 224.115 kb on + strand, within IAI47_01050at 224.177 kb on + strand, within IAI47_01050at 224.177 kb on + strand, within IAI47_01050at 224.178 kb on - strand, within IAI47_01050at 224.178 kb on - strand, within IAI47_01050at 224.205 kb on - strand, within IAI47_01050

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_sugar7 rep B; time point 3
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221,550 + IAI47_01040 0.50 +0.4
221,550 + IAI47_01040 0.50 -0.6
221,551 - IAI47_01040 0.50 -2.4
221,551 - IAI47_01040 0.50 -1.9
221,551 - IAI47_01040 0.50 -3.1
221,551 - IAI47_01040 0.50 -1.6
221,551 - IAI47_01040 0.50 -4.1
221,551 - IAI47_01040 0.50 -4.1
221,551 - IAI47_01040 0.50 -3.1
221,564 + IAI47_01040 0.51 -2.9
221,564 + IAI47_01040 0.51 -3.5
221,565 - IAI47_01040 0.51 -2.6
221,565 - IAI47_01040 0.51 -1.6
221,565 - IAI47_01040 0.51 -1.2
221,565 - IAI47_01040 0.51 -3.4
221,673 + IAI47_01040 0.58 -2.2
221,673 + IAI47_01040 0.58 -3.8
221,674 - IAI47_01040 0.58 -0.6
221,674 - IAI47_01040 0.58 -0.6
221,675 + IAI47_01040 0.58 -4.7
221,676 - IAI47_01040 0.58 -2.8
221,719 + IAI47_01040 0.61 -4.3
221,719 + IAI47_01040 0.61 -2.9
221,719 + IAI47_01040 0.61 -2.4
221,720 - IAI47_01040 0.61 -1.2
221,754 + IAI47_01040 0.63 -3.2
221,754 + IAI47_01040 0.63 -1.2
221,755 - IAI47_01040 0.63 -4.0
221,883 + IAI47_01040 0.71 -2.4
221,883 + IAI47_01040 0.71 -2.4
221,883 + IAI47_01040 0.71 -3.2
221,883 + IAI47_01040 0.71 -3.7
221,883 + IAI47_01040 0.71 -3.2
221,883 + IAI47_01040 0.71 -1.9
221,884 - IAI47_01040 0.71 -2.9
221,884 - IAI47_01040 0.71 -2.6
221,884 - IAI47_01040 0.71 -3.2
221,884 - IAI47_01040 0.71 -0.6
221,884 - IAI47_01040 0.71 -3.2
221,889 + IAI47_01040 0.72 -3.7
221,944 + IAI47_01040 0.75 -3.2
222,039 + IAI47_01040 0.81 -1.9
222,039 + IAI47_01040 0.81 -1.9
222,039 + IAI47_01040 0.81 -2.4
222,039 + IAI47_01040 0.81 -6.2
222,039 + IAI47_01040 0.81 -3.4
222,040 - IAI47_01040 0.81 -1.6
222,040 - IAI47_01040 0.81 -1.9
222,040 - IAI47_01040 0.81 -1.9
222,040 - IAI47_01040 0.81 -3.2
222,155 + IAI47_01040 0.89 -3.2
222,156 - IAI47_01040 0.89 -2.9
222,156 - IAI47_01040 0.89 -3.6
222,192 + -2.8
222,192 + -2.2
222,192 + -2.9
222,192 + -1.6
222,192 + -3.9
222,192 + -3.7
222,193 - -2.6
222,193 - -3.4
222,193 - -2.4
222,193 - -1.2
222,193 - +0.4
222,193 - -4.0
222,328 + -1.8
222,328 + -1.6
222,328 + -0.2
222,329 - +1.2
222,329 - -0.4
222,419 + IAI47_01045 0.10 -1.9
222,419 + IAI47_01045 0.10 -1.9
222,420 - IAI47_01045 0.11 -1.9
222,420 - IAI47_01045 0.11 -4.9
222,430 - IAI47_01045 0.12 -2.9
222,495 - IAI47_01045 0.19 -3.1
222,540 + IAI47_01045 0.24 -1.2
222,540 + IAI47_01045 0.24 -0.5
222,550 + IAI47_01045 0.25 -0.0
222,550 + IAI47_01045 0.25 -0.2
222,550 + IAI47_01045 0.25 -1.4
222,551 - IAI47_01045 0.25 -0.6
222,551 - IAI47_01045 0.25 -1.6
222,551 - IAI47_01045 0.25 -1.9
222,629 + IAI47_01045 0.34 -1.6
222,629 + IAI47_01045 0.34 -1.9
222,629 + IAI47_01045 0.34 -2.6
222,708 + IAI47_01045 0.43 -1.9
222,709 - IAI47_01045 0.43 -3.7
222,734 + IAI47_01045 0.46 -3.9
222,735 - IAI47_01045 0.46 -3.3
222,901 + IAI47_01045 0.65 -1.9
222,901 + IAI47_01045 0.65 -1.6
222,901 + IAI47_01045 0.65 -1.4
222,901 + IAI47_01045 0.65 -0.2
222,901 + IAI47_01045 0.65 +0.6
222,901 + IAI47_01045 0.65 -3.1
222,901 + IAI47_01045 0.65 -0.2
222,901 + IAI47_01045 0.65 -0.6
222,902 - IAI47_01045 0.65 -2.4
222,902 - IAI47_01045 0.65 -1.9
222,902 - IAI47_01045 0.65 -2.6
222,902 - IAI47_01045 0.65 -4.8
222,985 + IAI47_01045 0.75 -0.2
222,985 + IAI47_01045 0.75 -0.2
222,986 - IAI47_01045 0.75 -1.6
223,055 + IAI47_01045 0.83 -1.4
223,087 - IAI47_01045 0.86 -1.9
223,201 - -4.6
223,258 + -0.2
223,292 + -1.6
223,292 + -2.1
223,292 + -1.2
223,292 + -2.2
223,292 + -0.3
223,292 + -3.8
223,292 + -1.9
223,292 + -3.0
223,292 + -2.2
223,293 - -2.6
223,293 - -2.4
223,293 - -1.9
223,293 - -2.2
223,293 - -2.2
223,293 - -3.4
223,293 - -2.8
223,293 - -2.2
223,358 + -2.8
223,358 + -2.1
223,358 + -3.2
223,359 - -1.2
223,359 - -1.9
223,359 - -3.4
223,367 - -2.6
223,376 + -2.6
223,376 + -2.6
223,376 + -2.4
223,377 - -2.2
223,380 + -2.8
223,380 + -4.3
223,380 + -3.7
223,381 - -2.6
223,381 - -1.2
223,381 - -2.8
223,381 - -2.2
223,420 + -4.4
223,494 - -1.6
223,563 + IAI47_01050 0.13 -1.6
223,563 + IAI47_01050 0.13 -2.2
223,563 + IAI47_01050 0.13 -1.9
223,563 + IAI47_01050 0.13 -1.9
223,563 + IAI47_01050 0.13 -1.6
223,564 - IAI47_01050 0.13 -4.9
223,564 - IAI47_01050 0.13 -2.9
223,564 - IAI47_01050 0.13 -3.2
223,564 - IAI47_01050 0.13 -2.9
223,640 + IAI47_01050 0.18 -1.6
223,641 - IAI47_01050 0.18 -1.2
223,641 - IAI47_01050 0.18 -3.2
223,641 - IAI47_01050 0.18 -3.2
223,641 - IAI47_01050 0.18 -3.3
223,644 + IAI47_01050 0.18 -3.8
223,644 + IAI47_01050 0.18 -3.6
223,644 + IAI47_01050 0.18 -4.4
223,645 - IAI47_01050 0.19 -2.2
223,645 - IAI47_01050 0.19 -1.9
223,645 - IAI47_01050 0.19 -1.9
223,645 - IAI47_01050 0.19 -1.6
223,645 - IAI47_01050 0.19 +0.4
223,645 - IAI47_01050 0.19 -2.2
223,759 - IAI47_01050 0.26 -2.4
223,802 + IAI47_01050 0.29 -1.9
223,803 - IAI47_01050 0.29 -1.2
223,803 - IAI47_01050 0.29 -0.6
223,803 - IAI47_01050 0.29 -2.9
223,863 + IAI47_01050 0.33 -1.9
223,944 - IAI47_01050 0.39 -1.9
223,944 - IAI47_01050 0.39 -1.9
224,039 + IAI47_01050 0.45 -2.4
224,039 + IAI47_01050 0.45 -1.6
224,039 + IAI47_01050 0.45 -2.4
224,039 + IAI47_01050 0.45 -3.1
224,040 - IAI47_01050 0.45 -2.6
224,103 - IAI47_01050 0.50 -4.4
224,103 - IAI47_01050 0.50 -1.2
224,115 + IAI47_01050 0.50 -1.2
224,177 + IAI47_01050 0.55 -5.4
224,177 + IAI47_01050 0.55 -0.6
224,178 - IAI47_01050 0.55 -2.2
224,178 - IAI47_01050 0.55 -3.2
224,205 - IAI47_01050 0.57 -1.6

Or see this region's nucleotide sequence