Strain Fitness in Escherichia coli BL21 around ECD_02816

Experiment: Tailocin 264

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntECD_02815 and ECD_02816 are separated by 23 nucleotidesECD_02816 and ECD_02817 are separated by 9 nucleotidesECD_02817 and ECD_02818 overlap by 4 nucleotides ECD_02815: ECD_02815 - Capsule polysaccharide export inner-membrane protein kpsE, at 2,946,767 to 2,947,903 _02815 ECD_02816: ECD_02816 - KpsD protein, at 2,947,927 to 2,949,603 _02816 ECD_02817: ECD_02817 - KpsU protein, at 2,949,613 to 2,950,353 _02817 ECD_02818: ECD_02818 - Capsule polysaccharide export protein KpsC, at 2,950,350 to 2,952,377 _02818 Position (kb) 2947 2948 2949 2950Strain fitness (log2 ratio) -3 -2 -1 0 1at 2947.034 kb on + strand, within ECD_02815at 2947.121 kb on - strand, within ECD_02815at 2947.166 kb on + strand, within ECD_02815at 2947.178 kb on - strand, within ECD_02815at 2947.199 kb on - strand, within ECD_02815at 2947.258 kb on + strand, within ECD_02815at 2947.466 kb on - strand, within ECD_02815at 2947.520 kb on + strand, within ECD_02815at 2947.521 kb on - strand, within ECD_02815at 2947.521 kb on - strand, within ECD_02815at 2947.521 kb on - strand, within ECD_02815at 2947.559 kb on - strand, within ECD_02815at 2947.633 kb on - strand, within ECD_02815at 2947.639 kb on + strand, within ECD_02815at 2947.674 kb on + strand, within ECD_02815at 2947.731 kb on + strand, within ECD_02815at 2948.092 kb on - strandat 2948.198 kb on - strand, within ECD_02816at 2948.198 kb on - strand, within ECD_02816at 2948.199 kb on + strand, within ECD_02816at 2948.399 kb on - strand, within ECD_02816at 2948.399 kb on - strand, within ECD_02816at 2948.399 kb on - strand, within ECD_02816at 2948.408 kb on + strand, within ECD_02816at 2948.435 kb on - strand, within ECD_02816at 2948.500 kb on + strand, within ECD_02816at 2948.501 kb on - strand, within ECD_02816at 2948.542 kb on + strand, within ECD_02816at 2948.542 kb on + strand, within ECD_02816at 2948.596 kb on + strand, within ECD_02816at 2948.677 kb on - strand, within ECD_02816at 2948.710 kb on + strand, within ECD_02816at 2948.793 kb on + strand, within ECD_02816at 2948.833 kb on + strand, within ECD_02816at 2948.834 kb on - strand, within ECD_02816at 2948.862 kb on + strand, within ECD_02816at 2948.863 kb on - strand, within ECD_02816at 2948.885 kb on + strand, within ECD_02816at 2948.964 kb on - strand, within ECD_02816at 2948.971 kb on + strand, within ECD_02816at 2948.972 kb on - strand, within ECD_02816at 2948.983 kb on - strand, within ECD_02816at 2949.285 kb on + strand, within ECD_02816at 2949.285 kb on + strand, within ECD_02816at 2949.377 kb on - strand, within ECD_02816at 2949.427 kb on - strand, within ECD_02816at 2949.537 kb on + strandat 2949.562 kb on + strandat 2949.601 kb on + strandat 2949.627 kb on + strandat 2949.669 kb on + strandat 2949.716 kb on - strand, within ECD_02817at 2949.728 kb on + strand, within ECD_02817at 2949.870 kb on + strand, within ECD_02817at 2949.870 kb on + strand, within ECD_02817at 2949.870 kb on + strand, within ECD_02817at 2949.871 kb on - strand, within ECD_02817at 2949.871 kb on - strand, within ECD_02817at 2949.871 kb on - strand, within ECD_02817at 2949.885 kb on + strand, within ECD_02817at 2949.885 kb on + strand, within ECD_02817at 2949.885 kb on + strand, within ECD_02817at 2949.886 kb on - strand, within ECD_02817at 2949.889 kb on + strand, within ECD_02817at 2949.889 kb on + strand, within ECD_02817at 2949.890 kb on - strand, within ECD_02817at 2949.890 kb on - strand, within ECD_02817at 2949.890 kb on - strand, within ECD_02817at 2949.894 kb on + strand, within ECD_02817at 2949.935 kb on + strand, within ECD_02817at 2949.936 kb on - strand, within ECD_02817at 2949.947 kb on + strand, within ECD_02817at 2949.947 kb on + strand, within ECD_02817at 2949.947 kb on + strand, within ECD_02817at 2949.947 kb on + strand, within ECD_02817at 2950.046 kb on + strand, within ECD_02817at 2950.050 kb on + strand, within ECD_02817at 2950.101 kb on + strand, within ECD_02817at 2950.101 kb on + strand, within ECD_02817at 2950.138 kb on - strand, within ECD_02817at 2950.141 kb on + strand, within ECD_02817at 2950.142 kb on - strand, within ECD_02817at 2950.142 kb on - strand, within ECD_02817

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Tailocin 264
remove
2,947,034 + ECD_02815 0.23 +0.0
2,947,121 - ECD_02815 0.31 -0.6
2,947,166 + ECD_02815 0.35 +0.4
2,947,178 - ECD_02815 0.36 -0.6
2,947,199 - ECD_02815 0.38 +0.0
2,947,258 + ECD_02815 0.43 -0.7
2,947,466 - ECD_02815 0.61 +0.1
2,947,520 + ECD_02815 0.66 -0.2
2,947,521 - ECD_02815 0.66 +0.3
2,947,521 - ECD_02815 0.66 +0.8
2,947,521 - ECD_02815 0.66 +0.0
2,947,559 - ECD_02815 0.70 +0.1
2,947,633 - ECD_02815 0.76 -0.5
2,947,639 + ECD_02815 0.77 +0.7
2,947,674 + ECD_02815 0.80 -0.3
2,947,731 + ECD_02815 0.85 -0.7
2,948,092 - +1.2
2,948,198 - ECD_02816 0.16 +0.0
2,948,198 - ECD_02816 0.16 +0.1
2,948,199 + ECD_02816 0.16 -0.1
2,948,399 - ECD_02816 0.28 -0.8
2,948,399 - ECD_02816 0.28 -0.3
2,948,399 - ECD_02816 0.28 -0.1
2,948,408 + ECD_02816 0.29 -0.6
2,948,435 - ECD_02816 0.30 -0.3
2,948,500 + ECD_02816 0.34 +0.8
2,948,501 - ECD_02816 0.34 -0.0
2,948,542 + ECD_02816 0.37 -0.0
2,948,542 + ECD_02816 0.37 -0.2
2,948,596 + ECD_02816 0.40 -0.2
2,948,677 - ECD_02816 0.45 +0.6
2,948,710 + ECD_02816 0.47 -1.3
2,948,793 + ECD_02816 0.52 -0.3
2,948,833 + ECD_02816 0.54 -0.4
2,948,834 - ECD_02816 0.54 -0.5
2,948,862 + ECD_02816 0.56 -0.7
2,948,863 - ECD_02816 0.56 +0.3
2,948,885 + ECD_02816 0.57 -0.1
2,948,964 - ECD_02816 0.62 +0.2
2,948,971 + ECD_02816 0.62 +0.2
2,948,972 - ECD_02816 0.62 -0.1
2,948,983 - ECD_02816 0.63 -3.5
2,949,285 + ECD_02816 0.81 -0.2
2,949,285 + ECD_02816 0.81 +0.2
2,949,377 - ECD_02816 0.86 -1.6
2,949,427 - ECD_02816 0.89 -0.2
2,949,537 + +0.0
2,949,562 + -0.4
2,949,601 + -0.1
2,949,627 + +0.1
2,949,669 + +0.1
2,949,716 - ECD_02817 0.14 -0.6
2,949,728 + ECD_02817 0.16 -0.2
2,949,870 + ECD_02817 0.35 -0.4
2,949,870 + ECD_02817 0.35 +0.9
2,949,870 + ECD_02817 0.35 +0.3
2,949,871 - ECD_02817 0.35 -0.5
2,949,871 - ECD_02817 0.35 +0.5
2,949,871 - ECD_02817 0.35 +0.3
2,949,885 + ECD_02817 0.37 +0.1
2,949,885 + ECD_02817 0.37 -0.5
2,949,885 + ECD_02817 0.37 +0.2
2,949,886 - ECD_02817 0.37 +0.3
2,949,889 + ECD_02817 0.37 +0.1
2,949,889 + ECD_02817 0.37 -0.3
2,949,890 - ECD_02817 0.37 +0.9
2,949,890 - ECD_02817 0.37 -0.4
2,949,890 - ECD_02817 0.37 +0.1
2,949,894 + ECD_02817 0.38 -1.1
2,949,935 + ECD_02817 0.43 -0.2
2,949,936 - ECD_02817 0.44 -1.1
2,949,947 + ECD_02817 0.45 -0.5
2,949,947 + ECD_02817 0.45 +0.3
2,949,947 + ECD_02817 0.45 -0.7
2,949,947 + ECD_02817 0.45 -0.8
2,950,046 + ECD_02817 0.58 -0.0
2,950,050 + ECD_02817 0.59 +1.0
2,950,101 + ECD_02817 0.66 -0.9
2,950,101 + ECD_02817 0.66 -0.0
2,950,138 - ECD_02817 0.71 -0.2
2,950,141 + ECD_02817 0.71 -0.3
2,950,142 - ECD_02817 0.71 -0.7
2,950,142 - ECD_02817 0.71 -0.3

Or see this region's nucleotide sequence