Experiment: 0.1X LB plate, 1:1 coculture with Paenibacillus lautus 004-C1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_00089 and MPMX20_00090 are separated by 68 nucleotides MPMX20_00090 and MPMX20_00091 are separated by 251 nucleotides MPMX20_00091 and MPMX20_00092 are separated by 125 nucleotides MPMX20_00092 and MPMX20_00093 are separated by 68 nucleotides
MPMX20_00089: MPMX20_00089 - DNA ligase B, at 92,075 to 93,745
_00089
MPMX20_00090: MPMX20_00090 - hypothetical protein, at 93,814 to 94,431
_00090
MPMX20_00091: MPMX20_00091 - hypothetical protein, at 94,683 to 95,546
_00091
MPMX20_00092: MPMX20_00092 - Ribonuclease PH, at 95,672 to 96,388
_00092
MPMX20_00093: MPMX20_00093 - Orotate phosphoribosyltransferase, at 96,457 to 97,098
_00093
Position (kb)
94
95
96 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 93.687 kb on + strand at 93.712 kb on - strand at 93.731 kb on - strand at 93.813 kb on + strand at 93.817 kb on + strand at 93.821 kb on - strand at 93.821 kb on - strand at 93.882 kb on - strand, within MPMX20_00090 at 93.919 kb on - strand, within MPMX20_00090 at 93.960 kb on - strand, within MPMX20_00090 at 93.981 kb on - strand, within MPMX20_00090 at 93.981 kb on - strand, within MPMX20_00090 at 93.983 kb on + strand, within MPMX20_00090 at 94.008 kb on + strand, within MPMX20_00090 at 94.011 kb on - strand, within MPMX20_00090 at 94.016 kb on - strand, within MPMX20_00090 at 94.041 kb on - strand, within MPMX20_00090 at 94.065 kb on - strand, within MPMX20_00090 at 94.084 kb on + strand, within MPMX20_00090 at 94.091 kb on - strand, within MPMX20_00090 at 94.097 kb on + strand, within MPMX20_00090 at 94.097 kb on + strand, within MPMX20_00090 at 94.105 kb on - strand, within MPMX20_00090 at 94.180 kb on - strand, within MPMX20_00090 at 94.191 kb on - strand, within MPMX20_00090 at 94.207 kb on + strand, within MPMX20_00090 at 94.207 kb on + strand, within MPMX20_00090 at 94.208 kb on - strand, within MPMX20_00090 at 94.208 kb on - strand, within MPMX20_00090 at 94.215 kb on - strand, within MPMX20_00090 at 94.234 kb on - strand, within MPMX20_00090 at 94.251 kb on + strand, within MPMX20_00090 at 94.276 kb on - strand, within MPMX20_00090 at 94.311 kb on + strand, within MPMX20_00090 at 94.338 kb on + strand, within MPMX20_00090 at 94.338 kb on + strand, within MPMX20_00090 at 94.346 kb on - strand, within MPMX20_00090 at 94.346 kb on - strand, within MPMX20_00090 at 94.346 kb on - strand, within MPMX20_00090 at 94.346 kb on - strand, within MPMX20_00090 at 94.381 kb on + strand at 94.381 kb on + strand at 94.458 kb on - strand at 94.681 kb on - strand at 94.754 kb on + strand at 94.762 kb on - strand at 94.762 kb on - strand at 94.767 kb on - strand at 94.898 kb on - strand, within MPMX20_00091 at 94.898 kb on - strand, within MPMX20_00091 at 95.055 kb on + strand, within MPMX20_00091 at 95.108 kb on - strand, within MPMX20_00091 at 95.142 kb on + strand, within MPMX20_00091 at 95.150 kb on - strand, within MPMX20_00091 at 95.150 kb on - strand, within MPMX20_00091 at 95.204 kb on + strand, within MPMX20_00091 at 95.212 kb on - strand, within MPMX20_00091 at 95.212 kb on - strand, within MPMX20_00091 at 95.212 kb on - strand, within MPMX20_00091 at 95.286 kb on - strand, within MPMX20_00091 at 95.373 kb on + strand, within MPMX20_00091 at 95.381 kb on - strand, within MPMX20_00091 at 95.416 kb on - strand, within MPMX20_00091 at 95.424 kb on - strand, within MPMX20_00091 at 95.470 kb on - strand at 95.470 kb on - strand at 95.470 kb on - strand at 95.477 kb on + strand at 95.502 kb on - strand at 95.574 kb on - strand at 95.587 kb on - strand at 95.597 kb on + strand at 95.696 kb on + strand at 95.714 kb on + strand at 95.722 kb on - strand at 95.722 kb on - strand at 95.748 kb on + strand, within MPMX20_00092 at 95.758 kb on + strand, within MPMX20_00092 at 95.780 kb on + strand, within MPMX20_00092 at 95.790 kb on - strand, within MPMX20_00092 at 95.828 kb on + strand, within MPMX20_00092 at 95.828 kb on + strand, within MPMX20_00092 at 95.828 kb on + strand, within MPMX20_00092 at 95.858 kb on - strand, within MPMX20_00092 at 95.879 kb on + strand, within MPMX20_00092 at 95.879 kb on + strand, within MPMX20_00092 at 95.887 kb on - strand, within MPMX20_00092 at 95.955 kb on + strand, within MPMX20_00092 at 95.955 kb on + strand, within MPMX20_00092 at 96.008 kb on + strand, within MPMX20_00092 at 96.016 kb on - strand, within MPMX20_00092 at 96.016 kb on - strand, within MPMX20_00092 at 96.016 kb on - strand, within MPMX20_00092 at 96.041 kb on + strand, within MPMX20_00092 at 96.097 kb on - strand, within MPMX20_00092 at 96.103 kb on + strand, within MPMX20_00092 at 96.118 kb on + strand, within MPMX20_00092 at 96.118 kb on + strand, within MPMX20_00092 at 96.217 kb on - strand, within MPMX20_00092 at 96.218 kb on + strand, within MPMX20_00092 at 96.227 kb on + strand, within MPMX20_00092 at 96.274 kb on + strand, within MPMX20_00092 at 96.274 kb on + strand, within MPMX20_00092 at 96.276 kb on - strand, within MPMX20_00092 at 96.287 kb on + strand, within MPMX20_00092 at 96.300 kb on + strand, within MPMX20_00092 at 96.406 kb on - strand at 96.446 kb on + strand at 96.479 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 0.1X LB plate, 1:1 coculture with Paenibacillus lautus 004-C1 remove 93,687 + +0.6 93,712 - +0.6 93,731 - +1.4 93,813 + -2.0 93,817 + +1.0 93,821 - +2.2 93,821 - +0.7 93,882 - MPMX20_00090 0.11 +0.4 93,919 - MPMX20_00090 0.17 +0.4 93,960 - MPMX20_00090 0.24 +1.4 93,981 - MPMX20_00090 0.27 -1.7 93,981 - MPMX20_00090 0.27 +1.2 93,983 + MPMX20_00090 0.27 -2.0 94,008 + MPMX20_00090 0.31 -2.0 94,011 - MPMX20_00090 0.32 -0.8 94,016 - MPMX20_00090 0.33 +1.3 94,041 - MPMX20_00090 0.37 -0.4 94,065 - MPMX20_00090 0.41 +0.5 94,084 + MPMX20_00090 0.44 +0.1 94,091 - MPMX20_00090 0.45 +0.1 94,097 + MPMX20_00090 0.46 +0.9 94,097 + MPMX20_00090 0.46 -0.8 94,105 - MPMX20_00090 0.47 -2.9 94,180 - MPMX20_00090 0.59 +0.2 94,191 - MPMX20_00090 0.61 -1.0 94,207 + MPMX20_00090 0.64 -0.6 94,207 + MPMX20_00090 0.64 -1.4 94,208 - MPMX20_00090 0.64 +2.8 94,208 - MPMX20_00090 0.64 +1.8 94,215 - MPMX20_00090 0.65 +1.6 94,234 - MPMX20_00090 0.68 +0.7 94,251 + MPMX20_00090 0.71 -0.2 94,276 - MPMX20_00090 0.75 +1.2 94,311 + MPMX20_00090 0.80 -1.7 94,338 + MPMX20_00090 0.85 -2.3 94,338 + MPMX20_00090 0.85 +1.1 94,346 - MPMX20_00090 0.86 -0.2 94,346 - MPMX20_00090 0.86 -2.3 94,346 - MPMX20_00090 0.86 -0.6 94,346 - MPMX20_00090 0.86 +1.2 94,381 + +0.9 94,381 + -0.0 94,458 - -0.5 94,681 - +1.0 94,754 + +2.3 94,762 - +2.2 94,762 - +2.3 94,767 - +2.4 94,898 - MPMX20_00091 0.25 -1.3 94,898 - MPMX20_00091 0.25 +0.3 95,055 + MPMX20_00091 0.43 +0.5 95,108 - MPMX20_00091 0.49 +1.5 95,142 + MPMX20_00091 0.53 +1.1 95,150 - MPMX20_00091 0.54 -1.2 95,150 - MPMX20_00091 0.54 -1.4 95,204 + MPMX20_00091 0.60 +0.7 95,212 - MPMX20_00091 0.61 +2.0 95,212 - MPMX20_00091 0.61 +1.7 95,212 - MPMX20_00091 0.61 +2.4 95,286 - MPMX20_00091 0.70 +2.6 95,373 + MPMX20_00091 0.80 -2.6 95,381 - MPMX20_00091 0.81 +0.8 95,416 - MPMX20_00091 0.85 +1.4 95,424 - MPMX20_00091 0.86 +3.0 95,470 - +2.2 95,470 - +3.8 95,470 - +4.2 95,477 + -3.0 95,502 - +1.8 95,574 - -2.6 95,587 - +0.6 95,597 + -0.3 95,696 + +0.6 95,714 + +0.3 95,722 - -0.6 95,722 - -0.4 95,748 + MPMX20_00092 0.11 -0.6 95,758 + MPMX20_00092 0.12 +1.2 95,780 + MPMX20_00092 0.15 +2.1 95,790 - MPMX20_00092 0.16 -2.2 95,828 + MPMX20_00092 0.22 -0.1 95,828 + MPMX20_00092 0.22 -0.9 95,828 + MPMX20_00092 0.22 -0.4 95,858 - MPMX20_00092 0.26 -0.3 95,879 + MPMX20_00092 0.29 +1.2 95,879 + MPMX20_00092 0.29 -1.5 95,887 - MPMX20_00092 0.30 -0.3 95,955 + MPMX20_00092 0.39 -0.6 95,955 + MPMX20_00092 0.39 -1.5 96,008 + MPMX20_00092 0.47 +1.0 96,016 - MPMX20_00092 0.48 -0.4 96,016 - MPMX20_00092 0.48 +0.5 96,016 - MPMX20_00092 0.48 -0.7 96,041 + MPMX20_00092 0.51 +1.0 96,097 - MPMX20_00092 0.59 +0.7 96,103 + MPMX20_00092 0.60 -3.3 96,118 + MPMX20_00092 0.62 -3.6 96,118 + MPMX20_00092 0.62 +0.2 96,217 - MPMX20_00092 0.76 +0.4 96,218 + MPMX20_00092 0.76 -0.5 96,227 + MPMX20_00092 0.77 -0.4 96,274 + MPMX20_00092 0.84 -2.0 96,274 + MPMX20_00092 0.84 -0.4 96,276 - MPMX20_00092 0.84 +0.6 96,287 + MPMX20_00092 0.86 -0.8 96,300 + MPMX20_00092 0.88 -0.5 96,406 - +0.6 96,446 + +0.6 96,479 - +0.8
Or see this region's nucleotide sequence