Experiment: 1X LB plate, 1:1 coculture with Sphingobium xenophagum Sin1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_01532 and MPMX20_01533 are separated by 151 nucleotides MPMX20_01533 and MPMX20_01534 are separated by 45 nucleotides
MPMX20_01532: MPMX20_01532 - Pyruvate dehydrogenase [ubiquinone], at 1,601,439 to 1,603,157
_01532
MPMX20_01533: MPMX20_01533 - hypothetical protein, at 1,603,309 to 1,603,743
_01533
MPMX20_01534: MPMX20_01534 - NADH oxidoreductase HCR, at 1,603,789 to 1,604,757
_01534
Position (kb)
1603
1604 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1602.347 kb on + strand, within MPMX20_01532 at 1602.355 kb on - strand, within MPMX20_01532 at 1602.458 kb on + strand, within MPMX20_01532 at 1602.467 kb on - strand, within MPMX20_01532 at 1602.501 kb on - strand, within MPMX20_01532 at 1602.532 kb on + strand, within MPMX20_01532 at 1602.614 kb on + strand, within MPMX20_01532 at 1602.660 kb on + strand, within MPMX20_01532 at 1602.715 kb on + strand, within MPMX20_01532 at 1602.808 kb on - strand, within MPMX20_01532 at 1602.905 kb on - strand, within MPMX20_01532 at 1602.905 kb on - strand, within MPMX20_01532 at 1602.917 kb on + strand, within MPMX20_01532 at 1602.932 kb on + strand, within MPMX20_01532 at 1602.941 kb on + strand, within MPMX20_01532 at 1602.964 kb on + strand, within MPMX20_01532 at 1602.972 kb on - strand, within MPMX20_01532 at 1602.972 kb on - strand, within MPMX20_01532 at 1603.024 kb on - strand at 1603.060 kb on - strand at 1603.076 kb on - strand at 1603.090 kb on + strand at 1603.098 kb on - strand at 1603.109 kb on - strand at 1603.186 kb on + strand at 1603.438 kb on + strand, within MPMX20_01533 at 1603.446 kb on - strand, within MPMX20_01533 at 1603.446 kb on - strand, within MPMX20_01533 at 1603.487 kb on + strand, within MPMX20_01533 at 1603.558 kb on + strand, within MPMX20_01533 at 1603.609 kb on + strand, within MPMX20_01533 at 1603.609 kb on + strand, within MPMX20_01533 at 1603.637 kb on + strand, within MPMX20_01533 at 1603.637 kb on + strand, within MPMX20_01533 at 1603.637 kb on + strand, within MPMX20_01533 at 1603.744 kb on - strand at 1603.751 kb on + strand at 1603.818 kb on + strand at 1603.866 kb on + strand at 1603.883 kb on + strand at 1603.888 kb on + strand, within MPMX20_01534 at 1603.895 kb on + strand, within MPMX20_01534 at 1603.929 kb on + strand, within MPMX20_01534 at 1603.937 kb on - strand, within MPMX20_01534 at 1603.976 kb on + strand, within MPMX20_01534 at 1603.976 kb on + strand, within MPMX20_01534 at 1603.999 kb on - strand, within MPMX20_01534 at 1603.999 kb on - strand, within MPMX20_01534 at 1603.999 kb on - strand, within MPMX20_01534 at 1604.019 kb on - strand, within MPMX20_01534 at 1604.124 kb on + strand, within MPMX20_01534 at 1604.202 kb on + strand, within MPMX20_01534 at 1604.209 kb on + strand, within MPMX20_01534 at 1604.210 kb on - strand, within MPMX20_01534 at 1604.217 kb on - strand, within MPMX20_01534 at 1604.217 kb on - strand, within MPMX20_01534 at 1604.240 kb on + strand, within MPMX20_01534 at 1604.301 kb on - strand, within MPMX20_01534 at 1604.443 kb on + strand, within MPMX20_01534 at 1604.517 kb on - strand, within MPMX20_01534 at 1604.571 kb on + strand, within MPMX20_01534 at 1604.626 kb on - strand, within MPMX20_01534 at 1604.631 kb on - strand, within MPMX20_01534 at 1604.632 kb on + strand, within MPMX20_01534 at 1604.640 kb on - strand, within MPMX20_01534 at 1604.640 kb on - strand, within MPMX20_01534 at 1604.645 kb on - strand, within MPMX20_01534 at 1604.650 kb on - strand, within MPMX20_01534 at 1604.659 kb on - strand, within MPMX20_01534
Per-strain Table
Position Strand Gene LocusTag Fraction 1X LB plate, 1:1 coculture with Sphingobium xenophagum Sin1 remove 1,602,347 + MPMX20_01532 0.53 -0.4 1,602,355 - MPMX20_01532 0.53 -0.0 1,602,458 + MPMX20_01532 0.59 +0.3 1,602,467 - MPMX20_01532 0.60 -1.5 1,602,501 - MPMX20_01532 0.62 -0.1 1,602,532 + MPMX20_01532 0.64 -1.4 1,602,614 + MPMX20_01532 0.68 +3.1 1,602,660 + MPMX20_01532 0.71 -1.4 1,602,715 + MPMX20_01532 0.74 -1.2 1,602,808 - MPMX20_01532 0.80 -1.8 1,602,905 - MPMX20_01532 0.85 +2.0 1,602,905 - MPMX20_01532 0.85 +3.1 1,602,917 + MPMX20_01532 0.86 -0.3 1,602,932 + MPMX20_01532 0.87 -1.1 1,602,941 + MPMX20_01532 0.87 -0.4 1,602,964 + MPMX20_01532 0.89 -0.2 1,602,972 - MPMX20_01532 0.89 +0.5 1,602,972 - MPMX20_01532 0.89 +0.6 1,603,024 - -1.9 1,603,060 - -0.0 1,603,076 - +0.8 1,603,090 + -2.3 1,603,098 - -0.7 1,603,109 - -0.3 1,603,186 + -0.9 1,603,438 + MPMX20_01533 0.30 +0.1 1,603,446 - MPMX20_01533 0.31 -1.5 1,603,446 - MPMX20_01533 0.31 +0.1 1,603,487 + MPMX20_01533 0.41 -1.4 1,603,558 + MPMX20_01533 0.57 -1.9 1,603,609 + MPMX20_01533 0.69 -0.6 1,603,609 + MPMX20_01533 0.69 -0.6 1,603,637 + MPMX20_01533 0.75 -0.7 1,603,637 + MPMX20_01533 0.75 -1.8 1,603,637 + MPMX20_01533 0.75 -1.1 1,603,744 - +1.8 1,603,751 + +0.3 1,603,818 + +0.1 1,603,866 + -1.0 1,603,883 + -0.8 1,603,888 + MPMX20_01534 0.10 -1.0 1,603,895 + MPMX20_01534 0.11 -0.1 1,603,929 + MPMX20_01534 0.14 -2.1 1,603,937 - MPMX20_01534 0.15 +0.8 1,603,976 + MPMX20_01534 0.19 -0.1 1,603,976 + MPMX20_01534 0.19 +0.2 1,603,999 - MPMX20_01534 0.22 -0.6 1,603,999 - MPMX20_01534 0.22 +0.6 1,603,999 - MPMX20_01534 0.22 +0.3 1,604,019 - MPMX20_01534 0.24 -0.6 1,604,124 + MPMX20_01534 0.35 -2.1 1,604,202 + MPMX20_01534 0.43 -0.4 1,604,209 + MPMX20_01534 0.43 +1.1 1,604,210 - MPMX20_01534 0.43 +0.8 1,604,217 - MPMX20_01534 0.44 +3.1 1,604,217 - MPMX20_01534 0.44 +0.1 1,604,240 + MPMX20_01534 0.47 -0.1 1,604,301 - MPMX20_01534 0.53 -0.1 1,604,443 + MPMX20_01534 0.67 -0.9 1,604,517 - MPMX20_01534 0.75 +0.9 1,604,571 + MPMX20_01534 0.81 -0.6 1,604,626 - MPMX20_01534 0.86 -1.5 1,604,631 - MPMX20_01534 0.87 -0.2 1,604,632 + MPMX20_01534 0.87 -1.9 1,604,640 - MPMX20_01534 0.88 -0.5 1,604,640 - MPMX20_01534 0.88 -0.5 1,604,645 - MPMX20_01534 0.88 +1.3 1,604,650 - MPMX20_01534 0.89 -0.1 1,604,659 - MPMX20_01534 0.90 +0.1
Or see this region's nucleotide sequence