Strain Fitness in Methanococcus maripaludis S2 around MMP_RS04520

Experiment: McCas_H2_complete Antimycin A 0.01 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	McCas_H2_complete Antimycin A 0.01 mM
860,167	-		MMP_RS04515	0.53	-0.8
860,391	+		MMP_RS04515	0.72	+0.2
860,401	+		MMP_RS04515	0.73	+1.2
860,491	+		MMP_RS04515	0.81	-0.2
860,493	-		MMP_RS04515	0.81	+1.4
860,493	-		MMP_RS04515	0.81	+0.3
860,493	-		MMP_RS04515	0.81	+0.6
860,493	-		MMP_RS04515	0.81	+2.2
860,493	-		MMP_RS04515	0.81	-1.5
860,494	+		MMP_RS04515	0.81	-0.5
860,501	+		MMP_RS04515	0.82	+2.2
860,571	-		MMP_RS04515	0.88	-2.6
860,574	-		MMP_RS04515	0.88	+1.5
860,575	+		MMP_RS04515	0.88	+1.0
860,580	-		MMP_RS04515	0.88	-0.4
860,703	-				+0.5
860,704	+				-0.9
860,716	+				+0.6
860,717	-				+1.0
860,766	-				+0.3
860,795	-				-0.7
860,796	+				-1.1
860,819	+				+2.3
860,837	+				-1.5
860,837	+				+1.2
860,848	-				-1.9
860,855	-				-0.6
860,856	+				-0.2
860,875	-				+0.3
860,880	-				+0.2
860,881	+				+1.1
860,885	+				-0.1
860,943	+				-0.3
861,008	+				+1.7
861,088	-				+0.5
861,088	-				-0.1
861,088	-				-1.2
861,397	-		MMP_RS04520	0.54	+0.6
861,423	-		MMP_RS04520	0.60	+0.1
861,514	-		MMP_RS04520	0.81	-1.6
861,599	-				+1.4
861,642	+				+0.4
861,715	-				-0.2
861,715	-				+1.2
861,716	+				-4.2
861,740	-		MMP_RS04525	0.12	-1.2
861,774	-		MMP_RS04525	0.15	+1.0
861,775	+		MMP_RS04525	0.15	+0.9
861,780	-		MMP_RS04525	0.16	-0.2
861,781	+		MMP_RS04525	0.16	-0.9
861,786	+		MMP_RS04525	0.17	-0.9
861,786	+		MMP_RS04525	0.17	-0.8
861,825	+		MMP_RS04525	0.21	-0.5
861,829	-		MMP_RS04525	0.21	+0.6
861,829	-		MMP_RS04525	0.21	-0.7
861,829	-		MMP_RS04525	0.21	-1.6
861,830	+		MMP_RS04525	0.21	-0.2
861,840	-		MMP_RS04525	0.22	+0.7
861,853	-		MMP_RS04525	0.24	+3.6
861,894	+		MMP_RS04525	0.28	-0.5
861,900	+		MMP_RS04525	0.28	+1.0
861,945	+		MMP_RS04525	0.33	-0.7
861,956	-		MMP_RS04525	0.34	-0.0
861,956	-		MMP_RS04525	0.34	-1.2
861,957	+		MMP_RS04525	0.34	+0.2
861,985	-		MMP_RS04525	0.37	+1.3
861,985	-		MMP_RS04525	0.37	+1.6
861,986	+		MMP_RS04525	0.37	+0.4
861,986	+		MMP_RS04525	0.37	-0.4
861,987	-		MMP_RS04525	0.38	-0.2
861,999	+		MMP_RS04525	0.39	-1.6
862,145	-		MMP_RS04525	0.54	+1.5
862,145	-		MMP_RS04525	0.54	+1.0
862,145	-		MMP_RS04525	0.54	+0.9
862,146	+		MMP_RS04525	0.54	+2.0
862,146	+		MMP_RS04525	0.54	+0.3
862,146	+		MMP_RS04525	0.54	+0.4
862,152	+		MMP_RS04525	0.55	+0.7
862,152	+		MMP_RS04525	0.55	+1.1
862,446	+		MMP_RS04525	0.85	-1.8
862,446	+		MMP_RS04525	0.85	+0.8
862,456	+		MMP_RS04525	0.87	-1.1
862,461	-		MMP_RS04525	0.87	-0.6
862,461	-		MMP_RS04525	0.87	+0.3
862,465	-		MMP_RS04525	0.87	-0.9
862,465	-		MMP_RS04525	0.87	-0.1
862,465	-		MMP_RS04525	0.87	-0.9
862,465	-		MMP_RS04525	0.87	+3.2
862,466	+		MMP_RS04525	0.88	+0.2
862,466	+		MMP_RS04525	0.88	-1.2
862,466	+		MMP_RS04525	0.88	+0.2
862,467	-		MMP_RS04525	0.88	+0.5
862,467	-		MMP_RS04525	0.88	+0.2
862,467	-		MMP_RS04525	0.88	-0.1
862,467	-		MMP_RS04525	0.88	-0.1
862,468	+		MMP_RS04525	0.88	+0.4
862,468	+		MMP_RS04525	0.88	+0.3
862,468	+		MMP_RS04525	0.88	+1.0
862,470	+		MMP_RS04525	0.88	-0.1
862,470	+		MMP_RS04525	0.88	+0.1
862,470	+		MMP_RS04525	0.88	-1.6
862,470	+		MMP_RS04525	0.88	+0.5
862,564	+				-0.4
862,566	+				-0.2
862,578	-				-0.6
862,585	-				-0.3
862,589	-				+0.3
862,594	+				-1.1
862,594	+				+0.4