Experiment: hydrous ferric oxide electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0520 and SO0521 are separated by 167 nucleotides SO0521 and mscL are separated by 85 nucleotides mscL and SO0523 are separated by 204 nucleotides
SO0520: SO0520 - heavy metal efflux pump, CzcA family (NCBI ptt file), at 541,742 to 544,969
SO0520
SO0521: SO0521 - conserved hypothetical protein (NCBI ptt file), at 545,137 to 545,460
SO0521
SO0522: mscL - large conductance mechanosensitive channel protein (NCBI ptt file), at 545,546 to 545,956
mscL
SO0523: SO0523 - transcriptional regulator, LysR family (NCBI ptt file), at 546,161 to 547,093
SO0523
Position (kb) 545
546 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 544.191 kb on + strand, within SO0520 at 544.199 kb on - strand, within SO0520 at 544.271 kb on - strand, within SO0520 at 544.351 kb on - strand, within SO0520 at 544.529 kb on - strand, within SO0520 at 544.649 kb on - strand at 544.692 kb on + strand at 544.726 kb on + strand at 544.732 kb on - strand at 544.777 kb on - strand at 544.781 kb on + strand at 544.789 kb on - strand at 544.813 kb on - strand at 544.826 kb on + strand at 544.932 kb on - strand at 544.966 kb on - strand at 544.983 kb on - strand at 545.005 kb on + strand at 545.079 kb on + strand at 545.087 kb on - strand at 545.219 kb on + strand, within SO0521 at 545.227 kb on + strand, within SO0521 at 545.277 kb on + strand, within SO0521 at 545.285 kb on - strand, within SO0521 at 545.291 kb on + strand, within SO0521 at 545.292 kb on - strand, within SO0521 at 545.344 kb on + strand, within SO0521 at 545.359 kb on - strand, within SO0521 at 545.385 kb on + strand, within SO0521 at 545.385 kb on + strand, within SO0521 at 545.419 kb on + strand, within SO0521 at 545.419 kb on + strand, within SO0521 at 545.460 kb on + strand at 545.463 kb on - strand at 545.557 kb on + strand at 545.562 kb on + strand at 545.570 kb on - strand at 545.570 kb on - strand at 545.570 kb on - strand at 545.614 kb on - strand, within mscL at 545.761 kb on - strand, within mscL at 545.779 kb on - strand, within mscL at 545.781 kb on + strand, within mscL at 545.807 kb on + strand, within mscL at 545.807 kb on + strand, within mscL at 545.815 kb on - strand, within mscL at 545.962 kb on - strand at 546.078 kb on - strand at 546.129 kb on + strand at 546.213 kb on + strand at 546.250 kb on + strand at 546.265 kb on + strand, within SO0523 at 546.276 kb on + strand, within SO0523 at 546.287 kb on + strand, within SO0523 at 546.305 kb on - strand, within SO0523 at 546.329 kb on - strand, within SO0523 at 546.393 kb on - strand, within SO0523 at 546.395 kb on - strand, within SO0523
Per-strain Table
Position Strand Gene LocusTag Fraction hydrous ferric oxide electron acceptor remove 544,191 + SO0520 0.76 +1.3 544,199 - SO0520 0.76 +0.0 544,271 - SO0520 0.78 -0.1 544,351 - SO0520 0.81 -0.7 544,529 - SO0520 0.86 -1.0 544,649 - +1.1 544,692 + +0.4 544,726 + +0.2 544,732 - +0.1 544,777 - -3.5 544,781 + -3.0 544,789 - +0.8 544,813 - -2.7 544,826 + -0.2 544,932 - +2.7 544,966 - +1.2 544,983 - -2.0 545,005 + -1.1 545,079 + -2.3 545,087 - +1.7 545,219 + SO0521 0.25 -1.9 545,227 + SO0521 0.28 -1.3 545,277 + SO0521 0.43 -1.0 545,285 - SO0521 0.46 -2.8 545,291 + SO0521 0.48 +0.3 545,292 - SO0521 0.48 -2.3 545,344 + SO0521 0.64 +0.8 545,359 - SO0521 0.69 -1.6 545,385 + SO0521 0.77 -1.3 545,385 + SO0521 0.77 -1.8 545,419 + SO0521 0.87 -3.0 545,419 + SO0521 0.87 -0.6 545,460 + -2.9 545,463 - +0.5 545,557 + -2.1 545,562 + +0.8 545,570 - -0.4 545,570 - +0.9 545,570 - -0.0 545,614 - mscL SO0522 0.17 +1.0 545,761 - mscL SO0522 0.52 +0.2 545,779 - mscL SO0522 0.57 +0.5 545,781 + mscL SO0522 0.57 -0.2 545,807 + mscL SO0522 0.64 +0.7 545,807 + mscL SO0522 0.64 +0.0 545,815 - mscL SO0522 0.65 +1.2 545,962 - +0.8 546,078 - +0.6 546,129 + +0.9 546,213 + -0.1 546,250 + -0.7 546,265 + SO0523 0.11 -1.1 546,276 + SO0523 0.12 -0.3 546,287 + SO0523 0.14 -1.4 546,305 - SO0523 0.15 +0.5 546,329 - SO0523 0.18 -0.5 546,393 - SO0523 0.25 -3.1 546,395 - SO0523 0.25 +2.7
Or see this region's nucleotide sequence